BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G56220.3 Length=757 Score E Sequences producing significant alignments: (Bits) Value Ahg474784 jgi|Araly1|474784|fgenesh2_kg.1__4738__AT1G56220.3 872 0.0 > Ahg474784 jgi|Araly1|474784|fgenesh2_kg.1__4738__AT1G56220.3 Length=714 Score = 872 bits (472), Expect = 0.0 Identities = 622/688 (90%), Gaps = 35/688 (5%) Strand=Plus/Plus Query 12 ACAAC-AGATTTTAAAAAACCCCAAAAACTTTACATTCTTAACAATTTCAACCCTATGGG 70 ||||| || ||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1 ACAACAAG-TTTCAAAAAACCCCAAAAACTTTAGATTCTTAACAATTTCAACCCTATGGG 59 Query 71 CTTACTTGATCATCTCTGGGATGATACTGTCGCTGGTCCACGGCCAGAGAACGGCCTTGG 130 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 60 CTTACTTGATCATCTCTGGGATGATACCGTCGCTGGTCCACGGCCAGAAAACGGCCTTGG 119 Query 131 CAAGCTTCGTAAACACCATACCTTCAGTTTCCGACCTAGCTCCGGCAATGATCAATCGGA 190 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 120 CAAGCTTCGTAAACACCATACCTTCAGTTTCCGACCTAGCTCCGGCAATGAACAACCGGA 179 Query 191 AGCTGGAAGTGCGAGATCGTACGGTGAGGATTCGCTACCGGAAGAAGCAGTGAAAGTTAC 250 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 180 AGCTGGAAGTGCGAGATCGTACGGTGAGGATTCGCTACCGGAAGAGGCTGTGAAAGTTAC 239 Query 251 ACGTAGTATCATGATAATTAAACCACCGGGTTACCAAGGCAGTTCAGCTCCAGCTTC--- 307 | | || |||||||| ||||||||||||||||| |||||| |||||||||| ||||| Sbjct 240 AAGAAGCATCATGATTATTAAACCACCGGGTTATCAAGGCGGTTCAGCTCCGGCTTCTCC 299 Query 308 G-C--CT--G-CCGGTTCAACTCCGCCGCTATCACCTTTCTCTCCGCCGCTGTCTCCGTT 361 | | || | |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 300 GGCTTCTCCGGCCGGTTCAACTCCGCCGCTATCTCCTTTCTCTCCGCCGCTGTCTCCGTT 359 Query 362 CTCTGCAAACGCAGGGGGAAAGGAACCCTTTCGGTTTAGGAGACGGTCGACGTCGGATGC 421 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 CTCTGCAAACGCAGGAGGAAAGGAACCCTTTCGGTTTAGGAGACGGTCGACGTCGGATGC 419 Query 422 GTTCGAGAAGGCAGCAGGAGGATCAGAGACTGGACCAAGGAGCTCTCCTCCTACTTACGG 481 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GTTCGATAAGGCAGCAGGAGGATCAGAGACTGGACCAAGGAGCTCTCCTCCTACTTACGG 479 Query 482 CATGTGATCTCTAACACACAACACAAGTCTTGAAAAAGAGAAGA-GAAGAAGAAAACAGA 540 |||||||||||||| | | || || | |||||||||| || ||| ||||||||||| Sbjct 480 CATGTGATCTCTAATA-A-AAT-CA--T---GAAAAAGAGA-GAAGAACAAGAAAACAGA 530 Query 541 GTACCCACCCTTAAACGATGTCGTTTAGACTGCATGAAGTGGTGGtttttttGCTTTTGT 600 |||||| |||| || |||||||| || ||||||||||| ||||||| |||||||| Sbjct 531 GTACCC----TTAACCGCTGTCGTTTTCACAACATGAAGTGGTTGTTTTTT-GCTTTTGT 585 Query 601 AGGCCAAAGAGGTGTTCAGTGTTCTCTTATGTATGCGTGTATGAgtttgtttgtgtgttt 660 ||||||||||||||||| | || | ||| ||||||||||||||||||||||||||| Sbjct 586 AGGCCAAAGAGGTGTTC--T---CT-T-ATGGGTGCGTGTATGAGTTTGTTTGTGTGTTT 638 Query 661 gttttttatatgtaatctcgt-tttttt 687 |||| | |||||||||||||| |||||| Sbjct 639 GTTTCT-ATATGTAATCTCGTCTTTTTT 665 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27905975244 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5