BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56280.1
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914913 jgi|Araly1|914913|Al_scaffold_0001_5167 893 0.0
> Ahg914913 jgi|Araly1|914913|Al_scaffold_0001_5167
Length=621
Score = 893 bits (483), Expect = 0.0
Identities = 572/612 (93%), Gaps = 18/612 (3%)
Strand=Plus/Plus
Query 153 ATGGACGCTGATTCCAAGAGATTTCTAGCTACGCTTCGATCCCGATCTGAAATGTTAATG 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGACGCTGATTCCAAGAGATTTCTAGCTACGCTTCGATCCCGATCTGAAATGTTAATG 60
Query 213 GGCTTTGAAGAAATAGATGGAGATGATGATTTCCAGGAGGAGTTTGCTTGCCCGTTCTGT 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGCTTTGAAGAAATAGATGGAGATGATGATTTCCAGGAGGAGTTTGCTTGCCCGTTCTGT 120
Query 273 GCAGAATCGTATGATATCATCGGGTTGTGCTGTCACATAGATGATGAACATACTTTAGAG 332
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 121 GCAGAATCGTATGATATCATCGGTTTGTGTTGTCACATAGATGATGAACATACTTTAGAG 180
Query 333 TCGAAGAACGCGGTATGCCCTGTTTGTTCTCTTAAAGTGGGAGTTGATATCGTAGCACAC 392
|| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 181 TCAAAGAACGCGGTGTGCCCTGTTTGCTCTCTAAAAGTGGGAGTTGATATCGTAGCGCAC 240
Query 393 A-AACGCTTCACCAT----G---------G--G-A-CGAAAGAGAAAGTCACGAAAAAGC 434
| ||||||||||||| | | | | ||||||||||||||||| |||||
Sbjct 241 ATAACGCTTCACCATGGGAGTTTATTTAAGTTGCAGCGAAAGAGAAAGTCACGGAAAAGT 300
Query 435 GGTACCAATTCGACACTTTCACTTCTTCGGAAAGAACTAAGAGAAGGAGATCTACAAAGG 494
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 301 GGTACCAATTCGACACTTTCACTTCTTCGGAAAGAGCTAAGAGAAGGAGATCTACAGAGG 360
Query 495 TTGTTAGGATTTACTTCTCGTAATGGTTCTGTTGCGTCAAGTGTAACTCCTGATCCTCTC 554
||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||
Sbjct 361 TTGTTAGGATTTACTTCTCGTAATGGTTCTGTTGCATCAAGTGGAACTCCCGATCCTCTC 420
Query 555 CTGTCGTCATTTATCTCACCTACACGATCACAGAGTTCTCCTGCGCCACGCCAAACCAAA 614
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 421 CTGTCGTCATTTATCTCACCTACACGATCACAGAGTTCTCCTGTGACACGCCAAACCAAA 480
Query 615 AACGTATCCGAGGATAAACAGATAGAGCGCAAGAGACAAGTGTTCATCTCACCGGTCTCG 674
|| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 AAAGTATCCGAGGAGAAACAGATAGAGCGCAAGAGACAAGTGTGCATCTCACCGGTCTCA 540
Query 675 TTAAAAGATCGGGAAGAGAGGAGGCACAAATCAGAGTTTGTTCAGAGGCTCTTGTCATCA 734
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 TCAAAAGATCGGGAAGAGAGGAGGCAAAAATCAGAGTTTGTTCAGAGGCTCTTGTCATCA 600
Query 735 GCCATTTTCGAT 746
||||||||||||
Sbjct 601 GCCATTTTCGAT 612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44222583720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5