BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56430.1
Length=1144
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474806 jgi|Araly1|474806|fgenesh2_kg.1__4760__AT1G56430.1 1535 0.0
Ahg471013 jgi|Araly1|471013|fgenesh2_kg.1__967__AT1G09240.1 701 0.0
> Ahg474806 jgi|Araly1|474806|fgenesh2_kg.1__4760__AT1G56430.1
Length=999
Score = 1535 bits (831), Expect = 0.0
Identities = 944/999 (94%), Gaps = 6/999 (1%)
Strand=Plus/Plus
Query 62 AAACCTCATAGTGTCGACATGGGTTATTGCCAAGACGACCAACTCGTAAACAAGATCTGC 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAACCTCATAGTGTCGACATGGGTTATTGCCAAGACGACCAACTCGTAAACAAGATCTGC 60
Query 122 GATCTTTACGAAAAGATCTCGAAGCTTGAGACCCTAAAGCCTTGTGAAGATGTCGACACT 181
||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 61 GATCTATACGAAAAGATCTCGAAGCTCGAGACGCTAAAGCCTTGTGAAGATGTCGACACT 120
Query 182 CTCTTCAAGCAGCTCGTGTCCACATGCATACCACCAAACCCTAACATCGACGTCACCAAG 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCTTCAAGCAGCTCGTGTCCACATGCATACCACCAAACCCTAACATCGACGTCACCAAA 180
Query 242 ATGTCTGAAAACATCCAAGAGATGAGATCAAACCTCATCAAAATCTGTGGTGAGGCTGAA 301
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 181 ATGTCTGAAAACATCCAAGAGATGAGATCAAACCTCATCAAAATTTGTGGAGAAGCTGAA 240
Query 302 GGTTACTTAGAGCATCACTTCTCTTCAATCTTAACCTCTTTTGAAGATAACCCCCTTCAT 361
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 241 GGTTACTTAGAGCATCACTTCTCTTCAATCTTAACCTCTTTTGAAGACAACCCACTTCAT 300
Query 362 CATTTGAATCTTTTTCCTTACTACAACAACTACCTCAAACTAAGCAAGCTCGAGTTTGAT 421
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 301 CATTTGAATCTTTTTCCTTACTACAACAACTATCTCAAACTAAGCAAGCTTGAGTTCGAT 360
Query 422 CTCCTCGAACAGAACCTAAACGGTTTTGTTCCAAGGACTGTAGCTTTCATTGGCTCTGGT 481
|||||| |||||||||| ||||||| ||||||| |||||| ||||||||||||||||||
Sbjct 361 CTCCTCAAACAGAACCTTAACGGTTCAGTTCCAAAGACTGTTGCTTTCATTGGCTCTGGT 420
Query 482 CCTCTCCCTCTTACTTCCGTCGTTCTTGCCTCTTCCCATCTCAAAGACTCGATCTTTCAT 541
||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 421 CCTCTCCCTCTTACTTCTGTCGTTCTTGCCTCTTCGCATCTCAAAGACTCAATCTTTCAC 480
Query 542 AACTTTGACATCGACCCATCAGCGAATATGGTAGCAGCTCGTTTGGTTTCGTCTGATCCT 601
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 481 AACTTTGACATCGACCCATCAGCGAATTTGGTAGCAGCTCGGTTGGTTTCGTCTGATCCT 540
Query 602 GATCTTTCTCAACGTATGTTTTTCCATACTGTTGATATAATGGATGTAACCGAGAGCTTG 661
|||||||| ||||||||||| ||||| || |||||| |||||||||| || ||||||||
Sbjct 541 GATCTTTCACAACGTATGTTCTTCCACACCGTTGATGTAATGGATGTGACTGAGAGCTTA 600
Query 662 AAGGGCTTCGACGTTGTGTTCTTGGCTGCTCTTGTAGGGATGGATAAAAAGGAGAAGGTT 721
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 601 AAGGGCTTCGACGTTGTGTTCTTGGCTGCTCTTGTCGGAATGGATAAAAAGGAGAAGGTT 660
Query 722 AAGGTGGTCGAGCATCTTGAGAAACACATGTCTCCTGGTGCTTTGCTCATGCTGAGAAGC 781
|| ||| |||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 661 AAAGTGATCGAGCATCTTGAGAAACACATGTCTCCTGGTGCTTTGCTCATGTTAAGAAGT 720
Query 782 GCTCATGGACCTAGAGCTTTTCTCTATCCAATCGTTGAGCCTTGTGATCTCGAAGGTTTC 841
||||||||||||||||| ||||||||||| ||||| ||||||||||||||| ||||||||
Sbjct 721 GCTCATGGACCTAGAGCGTTTCTCTATCCCATCGTCGAGCCTTGTGATCTCCAAGGTTTC 780
Query 842 GAAGTTTTATCGGTTTATCACCCTACCGATGAAGTTATCAACTCCATTGTAATCTCAAGG 901
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CAAGTTTTATCGGTTTATCACCCTACCGATGAAGTTATCAACTCCATTGTAATCTCAAGG 840
Query 902 AAGCTAGGTG-A-A-GATGCT---AATGGTGTTGTTCATGATCATATAGATCAAGCTTCG 955
||||| || | | | |||| | ||||||||||||||||||||||||||||||||||||
Sbjct 841 AAGCTCGGCGGAGAAGATGTTGGTAATGGTGTTGTTCATGATCATATAGATCAAGCTTCG 900
Query 956 GATCTCGCGTGTAACTGTTCCAAGATCCACGTGATTATGAACAAGAAGAAGAGCATTATC 1015
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GATCTCGAGTGTAACTGTTCCAAGATCCACGTGATTATGAACAAGAAGAAGAGCATTATC 960
Query 1016 GAGGAGTTCGCAGGTGCTAATGAAGAACAACTTACCTAG 1054
||||||||||||||||||||||||||||||||||| |||
Sbjct 961 GAGGAGTTCGCAGGTGCTAATGAAGAACAACTTACTTAG 999
> Ahg471013 jgi|Araly1|471013|fgenesh2_kg.1__967__AT1G09240.1
Length=1241
Score = 701 bits (379), Expect = 0.0
Identities = 696/845 (82%), Gaps = 37/845 (4%)
Strand=Plus/Plus
Query 70 TAGTGTCGACATGGGTTATTGCCAAGACGACCAACTCGT--AAACAAGATCTGCGATCTT 127
||||||||||||||| |||||||||||| ||| | || |||| | || ||||||||
Sbjct 64 TAGTGTCGACATGGG---TTGCCAAGACGAACAATTGGTGCAAAC-A-ATATGCGATCTC 118
Query 128 TACGAAAAGATCTCGAAGCTTGAGACCCTAAAGCCTTGTGAAGATGTCGACACTCTCTTC 187
|||||||||||||| ||||| |||| ||||| || | ||||||||| ||| |||||||
Sbjct 119 TACGAAAAGATCTCAAAGCTGGAGAATCTAAAACCATCCGAAGATGTCAACATTCTCTTC 178
Query 188 AAGCAGCTCGTGTCCACATGCATACCACCAAACCCTAACATCGACGTCACCAAGATGTCT 247
|||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 179 AAGCAGCTTGTTTCCACATGCATCCCACCAAACCCTAACATCGACGTCACCAAGATGTGT 238
Query 248 GA-AAACATCCAAGAGATGAGA-TCAAACCTCATCAAAATCTGTGGTG-AGGCTGAAGGT 304
|| ||| |||||||||| || | || ||||||||| |||||||| | || ||||||||
Sbjct 239 GACAAAG-TCCAAGAGATTCGACTTAA-CCTCATCAAGATCTGTGGCGTAG-CTGAAGGT 295
Query 305 TACTTAGAGCATCACTTCTCTTCAATCTTAACCTCTTTTGAAGATAACCCCCTTCATCAT 364
||||||| ||||| |||||||| ||||| || ||||| |||| ||||| |||||||||
Sbjct 296 CACTTAGAACATCATTTCTCTTCGATCTTGACTTCTTTCCAAGACAACCCACTTCATCAT 355
Query 365 TTGAATCTTTTTCC-TTACTACAACAACTACCTCAAACTAAGCAAGCTCGAGTTTGATCT 423
|| || | |||||| ||| ||||||||||| | |||||| | |||||||| || || ||
Sbjct 356 TTAAA-CATTTTCCCTTATTACAACAACTATTTAAAACTAGGAAAGCTCGAATTCGACCT 414
Query 424 CCTCGA-ACAGAAC-CTAAACGGTTTTGTTCCAAGGACTGTAGCTTTCATTGGCTCTGGT 481
|||| | ||| ||| | ||| || ||||| |||| || ||| || |||||||| ||||||
Sbjct 415 CCTC-ACACAAAACTC-AAATGGCTTTGTCCCAAAGAGTGTGGCCTTCATTGGATCTGGT 472
Query 482 CCTCTCCCTCTTACTTCCGTCGTTCTTGCCTC-TTCCCATCTCAAAGACTCGATCTTTCA 540
||||| |||||||||||| |||||||||| || || | ||||||||||| | ||||||||
Sbjct 473 CCTCTTCCTCTTACTTCCATCGTTCTTGCTTCATTAC-ATCTCAAAGACACAATCTTTCA 531
Query 541 TAACTTTGACATCGACCCATCAGCGAA-T-ATGGTAGCAGCTCGTT-TGGTTTCGTCTGA 597
|||||||||||||||||||||||||| | | | || | | || ||||||| |||||
Sbjct 532 CAACTTTGACATCGACCCATCAGCGAACTCAC--TCGCTTCCC-TTCTGGTTTCCTCTGA 588
Query 598 TCCTGATCTT-TCTCAACGTATGTTTTTCCATACTGTTGATATAATGGATGTAACCGAGA 656
||| || | | |||||||| ||||| ||||| || |||||||||||||| || || ||||
Sbjct 589 TCCAGA-CATCTCTCAACGGATGTTCTTCCACACCGTTGATATAATGGACGTGACAGAGA 647
Query 657 GCTTGAAGG-GCTTCGACGTTGTGTT-CTTGGCTGCTCTTGTAGGGATGGATAAAAAGGA 714
|||||| || ||||||| || ||||| || | |||||||||| || ||| | || ||||
Sbjct 648 GCTTGA-GGAGCTTCGATGTCGTGTTTCTAG-CTGCTCTTGTTGGAATGAACAAGGAGGA 705
Query 715 GAAGGTTAAGGTGGTCGAGCATCTTG-AGAAACACATGTCTCCTGGTGCTTTGCTCATGC 773
||| ||||| ||| |||||||||| | ||||||||||| ||||||||||| |||||||||
Sbjct 706 GAAAGTTAAAGTGATCGAGCATCT-GCAGAAACACATGGCTCCTGGTGCTGTGCTCATGC 764
Query 774 TGAGAAGCGCTCATGGACCTAGAGCTTTTCTCTATCCAATCGTTGAGCCTTGTGATCT-C 832
| || || |||||||| || ||||| ||||| ||||| ||||||||||| |||||||| |
Sbjct 765 TTAGGAGTGCTCATGGTCCGAGAGCATTTCTTTATCCGATCGTTGAGCCGTGTGATCTTC 824
Query 833 GAAGGTTTCGAAGTTTTATCGGTTTATCACCCTACCGATGAAGTTATCAACTCCATTGTA 892
| || ||||| ||||| || |||||||||| || ||||| |||||||||||| | ||
Sbjct 825 -AGGGGTTCGAGGTTTTGTCTATTTATCACCCAACAGATGATGTTATCAACTCCGTGGTG 883
Query 893 ATCTC 897
|||||
Sbjct 884 ATCTC 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42659544123
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5