BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56460.2
Length=2166
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474809 jgi|Araly1|474809|fgenesh2_kg.1__4763__AT1G56460.1 2239 0.0
> Ahg474809 jgi|Araly1|474809|fgenesh2_kg.1__4763__AT1G56460.1
Length=1789
Score = 2239 bits (1212), Expect = 0.0
Identities = 1375/1452 (95%), Gaps = 18/1452 (1%)
Strand=Plus/Plus
Query 532 GAAGTAACCAAGTGAGGCAAGGTGGAGGCCACAGCACTGCATCCACTGAAGGGTTTCTTG 591
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 347 GAAGTAACCAAGTGAGGCAAGGTGGAGGCCACAGCACTGCATCTACTGAAGGGTTTCTTG 406
Query 592 TACCTAGTAAAAAG-AAAGACACAATTGACACGACAGAACGTCGAGCTGGTTTTGATGAG 650
| ||| || ||||| |||||| | |||||||| ||||| |||||||||||||||||||||
Sbjct 407 TCCCTTGT-AAAAGAAAAGACTCCATTGACACAACAGAGCGTCGAGCTGGTTTTGATGAG 465
Query 651 AATATCATCAAGAAGGTTAAACTCAAACTTGGTGGTTCGTCAAAAACTATAAATATAATA 710
||| |||||||||||||||||||||||| |||||||||||||||||||||||| || ||
Sbjct 466 CATACCATCAAGAAGGTTAAACTCAAACTCGGTGGTTCGTCAAAAACTATAAATGTAGTA 525
Query 711 TCAGCATCCGATGGTGCTTCTGATATTGGATTGTGTTCGACAAAGTCGTCCCATGCATCA 770
|| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 526 TCTGCATCTGATGGTGCTTCTGATATTGGGTTGTGTTCGACAAAGTCGTCCCATGCATCA 585
Query 771 GATGATGCCTTGGGGATTGGGCAGACTTACCAGGAAATTTCAAACGAGCGATCGACTAAA 830
||| ||| ||||||||||||||||||| ||||||| |||||||||||| |||| ||||||
Sbjct 586 GATAATGTCTTGGGGATTGGGCAGACTAACCAGGAGATTTCAAACGAGAGATCCACTAAA 645
Query 831 CTAAGAGGGACACCGTTGGACACTGCAAGCAAATCAGATTCATGTAATGATACCCGAGAT 890
|||||||||||||| |||||||||||||||| ||||||||||||||||||| |||| |
Sbjct 646 GAAAGAGGGACACCGTGGGACACTGCAAGCAAAGCAGATTCATGTAATGATACGCGAGTT 705
Query 891 AGCAAAGCGAACACAAATCCTATTCGTAAAAGCAACCGGATTTCTAAACGACGTGTTCTG 950
|||||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 706 AGCAAAACGAATACAAATCCAATTCGTAAAAGCAATCGGATTTCTAAACGACGTGTTCTG 765
Query 951 GATGAAGAACTCGATAGTCTTGATGATGATGACGAAGAAATTCAATTTCTCAGAAGGATG 1010
||||| |||||||||||||||||||||||||| ||||||||||| ||||||| |||||||
Sbjct 766 GATGAGGAACTCGATAGTCTTGATGATGATGATGAAGAAATTCAGTTTCTCAAAAGGATG 825
Query 1011 AAAATGGCTAAAGTTGTGGCTGTAGAAGAAGATGTTGATGACGATGAAGACAGGACCAGA 1070
||||||||||||||||||||||| | ||||||||||||||||||||||| |||| ||||
Sbjct 826 AAAATGGCTAAAGTTGTGGCTGT-G--GAAGATGTTGATGACGATGAAGAAAGGAGCAGA 882
Query 1071 AAACATAAAAAGCTTTCCAAGGTAATGAAACAAAATGTAGAATTCCCACGTGGTGTAGGA 1130
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 883 AAACATAAAAAGCTTTCCAAGGTAATGAAACAAATTGTAGAATTCCCACGTGGTGTAGGA 942
Query 1131 ACATCAGAAAAATCAGCCAAGAAGGATAAGATGGGAAAAGCATTTGACGATGCTGATTAT 1190
||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 943 ACATCAGAAAAGTCAGCCAAGAAGGATAAGATGGGAAAAGCATTT---GATACTGATTAT 999
Query 1191 GTCAA-G--GATGATGATGAGGAAGAAGAAGAGGCTGTTTCAGATGTTGAGCTAGAAAAT 1247
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 GTCAAGGACGATGATGATGAGGAAGAAGAAGAGGCTGTTTCAGATGTTGAGCTAGAAAAT 1059
Query 1248 AAGAGCGCGAGAACT---AGAAGAGGAGCTGAAGAAGGTCAGAGTGAAGTTAAGACAGAA 1304
|||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1060 AAGAGCACGAGAACTAGAAGAAGAGGAGCTGAAGATGGTCAGAGTGAAGTTAAGACAGAA 1119
Query 1305 ATGACTGTGACTACTCGTCGACGTTCTGGACATAGTGGAAACCTTATCGAGTTTCCTCGT 1364
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1120 ATGACTGTGACTACTCGTCGACGTTCTGGACATAGTGGAAACCTCATCGAGTTTCCTCGT 1179
Query 1365 GGCCTACCTCCTGCTCCACCTAGAAAGCGAAAAGAAAATGGATTAGAGGTTGATCAGCAA 1424
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 GGCCTACCTCCAGCTCCACCTAGAAAGCGAAAAGAAAATGGATTAGAGGTTGATCAGCAA 1239
Query 1425 CTAAAGAAAGCTGAGGCTGCCCAGAGACGTAAATTGCAAGTCGAAAAGGCAGCTAGAGAA 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1240 CTAAAGAAAGCTGAGGCTGCCCAGAGACGTAAATTGCAAGTCGAAAAGGCAGCAAGAGAA 1299
Query 1485 TCAGAGGCTGAGGCAATCAGGAAGATTCTGGGACAAGACTCTAGCagaaagaagaaggaa 1544
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1300 TCAGAGGCTGAGGCAATCAGGAAGATTCTGGGCCAAGACTCTAGCAGAAAGAAGAAGGAA 1359
Query 1545 gataagataaagaaacgccaagaagacaaggccaaggagaaggCTGCAGACTCGATTGCC 1604
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1360 GATAAGATAAAGAAACGCCAAGAAGACAAAGCCAAGGAGAAGGCTGCAGACTCGATCGCC 1419
Query 1605 CGTAGATCAGACACAGTGAAGTGGGTGATGGGTCCTTCAGGAACCATAGTAACCTTCCCA 1664
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1420 CGTAGATCAGACACAGTGAAGTGGGTGATGGGTCCTTCAGGAACCATCGTAACCTTCCCA 1479
Query 1665 GAAGAACTTGGATTGCCAAGTATATTCAACTCTACACCACACAGTTATCCTCCACCGCGG 1724
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1480 GAAGAACTTGGATTGCCAAGTATATTCAACTCTACACCACACAGTTACCCTCCACCGCGA 1539
Query 1725 GAAAGATGTGCGGGTCCAGAATGTACAAACCCATACAAATATAGAGATTCAGAGTCAAAT 1784
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1540 GAAAGATGTGCGGGTCCAGAATGTACAAACCCATACAAATACAGAGATTCAGAGTCAAAT 1599
Query 1785 CTTCCATTGTGCAGCCTCCGATGCTACAAGGCAATCAAAGGCTAAGTGATGGATATATTG 1844
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1600 CTTCCATTGTGCAGCCTCCGATGCTACAAAGCAATCAAAGGCTAAGTGATGGATATATTG 1659
Query 1845 TGATCATACTATTTGTATAATATAATATTT-TAGCGTTCATGTAAATACTAATAATAAAG 1903
||||||||||||| |||||| ||||||||| || ||||||||||||||||||||||||||
Sbjct 1660 TGATCATACTATT-GTATAAAATAATATTTATATCGTTCATGTAAATACTAATAATAAAG 1718
Query 1904 CACTATATCATACTGTTTGTTGTT-AAGCAAGATTTGAATGTTTATAAACATATATGAAT 1962
|||||||||||||||||||||||| || ||||| |||||||| |||||||||| |||| |
Sbjct 1719 CACTATATCATACTGTTTGTTGTTCAA-CAAGAGTTGAATGTCTATAAACATAGATGACT 1777
Query 1963 ATATCATACTGT 1974
||||||||||||
Sbjct 1778 ATATCATACTGT 1789
Score = 326 bits (176), Expect = 5e-88
Identities = 200/212 (94%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 160 CTCAAAGTTCGATCCTTTGAATCTAAATCAGGTATGTGGAGCTTTGATTTTTGAGTGAAA 219
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 95 CTCAAAGTTCGATCCTTTGAATCTAAATCAGGTATGTGAAGCTTTGATTTTTGAGTCAAG 154
Query 220 CAAAAACAATTATGGAAAGTCTTGGAGGTATTGGATTCAGTAATACGAGTAGTGCAACAA 279
||| | |||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 155 CAAGACCAATTATGGAAAGTCTTGGAGGTATTGGATTCAGTAATACTAACAGTGCAACAA 214
Query 280 AGAAGAAGAGAAGCACTACATTGCGTCGGCCTTGGAATGATCGACAGTTACAGGATTCTT 339
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 215 AGAAGAAGAGAAGCACCACATTGCGTCGGCCTTGGAATGAGCGACAGTTACAGGATTCTT 274
Query 340 CTTCATTGCCATCCACACCAGTCGCTGACAAT 371
| ||||||||||||||||||||| ||||||||
Sbjct 275 CGTCATTGCCATCCACACCAGTCACTGACAAT 306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81513124300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5