BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56600.1
Length=1396
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474819 jgi|Araly1|474819|fgenesh2_kg.1__4773__AT1G56600.1 1705 0.0
> Ahg474819 jgi|Araly1|474819|fgenesh2_kg.1__4773__AT1G56600.1
Length=1319
Score = 1705 bits (923), Expect = 0.0
Identities = 1220/1352 (90%), Gaps = 66/1352 (5%)
Strand=Plus/Plus
Query 1 ACTCAGcacactacacacaaact-aaacgaaacaaaaacaaacacaaacacaaacacaGA 59
||||| ||||||||||||||||| |||| ||||||||||||||||||| || ||| | |
Sbjct 1 ACTCATCACACTACACACAAACTCAAACAAAACAAAAACAAACACAAA-AC--ACA-A-A 55
Query 60 AGTATTTTCTAAAAGACAAAGAAGATGGCACCTGAGATCAATACCAAACTCACC-GTACC 118
||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| | |||
Sbjct 56 AGTTTTTTCTAAAAGAC-AAGAAGATGGCACCTGAGATCAATACCAAACTTACCAG-ACC 113
Query 119 GGTCCACTCAG-CA--AC---CGGCGGAGAAAAGAGGGCGTACGTGACTTTCCTTGCTGG 172
||||| ||||| || | ||||||||||||||| || |||||||||||||| || ||
Sbjct 114 GGTCCTCTCAGCCACCGCTTACGGCGGAGAAAAGAGAGCTTACGTGACTTTCCTCGCCGG 173
Query 173 AACTGGAGACTACGTGAAAGGGGTGGTGGGTCTTGCTAAGGGGCTAAGGAAAGCTAAGAG 232
|||||||||||| |||||||| ||||||||||||||||||||| |||||||| |||||||
Sbjct 174 AACTGGAGACTATGTGAAAGGAGTGGTGGGTCTTGCTAAGGGGTTAAGGAAAACTAAGAG 233
Query 233 CAAGTACCCACTCGTGGTGGCGGTTTTGCCGGATGTACCGGAGGATCACCGGAAACAGTT 292
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 234 CAAGTATCCACTTGTGGTGGCGGTTTTGCCGGATGTACCGGAGGATCACCGGAAACAGCT 293
Query 293 GGTGGATCAAGGCTGTGTTGTTAAGGAGATAGAGCCGGTTTATCCACCGGAGAATCAAAC 352
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 294 GGTGGATCAAGGCTGTGTCGTTAAGGAGATAGAGCCGGTATATCCACCGGAGAATCAAAC 353
Query 353 CGAGTTTGCTATGGCTTACTATGTCATTAACTACTCTAAGCTTCGTATCTGGGAGTTCGT 412
|||||||||||||| ||||| || || |||||||||||||||||||| ||| |||| ||
Sbjct 354 TGAGTTTGCTATGGCATACTACGTTATCAACTACTCTAAGCTTCGTATTTGGAAGTTTGT 413
Query 413 GGAGTACAACAAGATGATATACTTGGACGGTGACATACAAGTGTTCGACAACATAGATCA 472
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 414 GGAGTACAGCAAGATGATATACTTGGACGGAGACATACAAGTGTTCGACAACATAGATCA 473
Query 473 CTTGTTTGATCTTCCAAACGGCCAATTCTATGCAGTTATGGACTGTTTTTGCGAGAAGAC 532
|||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 474 CTTGTTTGATCTTCCAAACGGCCAATTCTACGCAGTCATGGACTGTTTCTGCGAGAAGAC 533
Query 533 ATGGAGTCACTCGCCACAGTACAAGATCGGTTATTGCCAACAGTGTCCGGACAAGGTGAC 592
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 ATGGAGCCACTCGCCACAGTACAAGATCGGTTATTGCCAACAGTGTCCGGACAAGGTGAC 593
Query 593 ATGGCCAGAGGCCAAGC---TTGGTCCTAAGCCGCCTTTGTACTTCAACGCCGGTATGTT 649
||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 594 ATGGCCAGAGGCCGAGCTAATTGGTCCTAAGCCGCCTTTGTATTTCAACGCCGGTATGTT 653
Query 650 CGTTTACGAGCCTAACCTCTCCACTTATCATAACCTCTTGGAGACGGTCAAAATTGTGCC 709
|||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||
Sbjct 654 CGTTTACGAGCCTAACCTCTCCACTTATCATAGCCTCTTGGAGACTGTCAAAGTTGTGCC 713
Query 710 TCCCACTCTTTTTGCTGAACAGGATTTTTTGAATATGTACTTCAAGGACATATACAAGCC 769
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 714 TCCTACTCTTTTTGCTGAACAGGACTTTTTGAATATGTACTTCAAGGACATATACAAGCC 773
Query 770 AATACCACCAGTGTATAACTTGGTCTTGGCAATGCTTTGGAGGCATCCAGAGAATATAGA 829
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 AATACCACCGGTGTATAACTTGGTCTTGGCAATGCTTTGGAGGCATCCAGAGAATATAGA 833
Query 830 GCTTGACCAAGTCAAAGTTGTTCACTACTGTGCTGCTGGTGCTAAACCTTGGAGATTCAC 889
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 834 GCTTGACCAAGTCAAAGTTGTTCACTACTGTGCTGCTGGTGCTAAGCCTTGGAGATTCAC 893
Query 890 TGGAGAAGAAGAGAACATGGACAGAGAAGACATTAAGATGCTGGTCAAGAAATGGTGGGA 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TGGAGAAGAAGAGAACATGGACAGAGAAGACATTAAGATGCTGGTCAAGAAATGGTGGGA 953
Query 950 CATTTACAATGACGAGTCTCTTGATTACAAGAATGTTGTCATTGGGGACAGCCACAAGAA 1009
||| ||||||||||||||||||||||||||||| ||||| |||| ||| ||||||||||
Sbjct 954 CATATACAATGACGAGTCTCTTGATTACAAGAACGTTGTTATTGAAGACGGCCACAAGAA 1013
Query 1010 GCAACAGACACTTCAGCAGTTTATCGAAGCTTTGTCTGAAGCCGGTGCGCTTCAGTATGT 1069
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||
Sbjct 1014 GCAACAGACACTTCAGCAGTTTATCGAAGCTTTGTCCGAAGCCGGTGTGCTTCAGTACGT 1073
Query 1070 CAAAGCTCCATCTGCAGCTTAGCCACAATATAATCATCGAGCTCGTTGCTGCATACGCCT 1129
|||||||||||||||||||||| |||||||| | ||| | | || | |
Sbjct 1074 CAAAGCTCCATCTGCAGCTTAGACACAATAT-A--ATC-A---------T-CA-A-G--- 1114
Query 1130 CTTCATGACTATAATATTGCTTATTGCTTTAGTTTGAAACTTGTTTATAGGACCATATAG 1189
| | |||| | | ||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1115 C-T-ATGA-T-T-ATAATG----TTGCTTTAGTTTGAAACTTGTTTATAGGACCATATAG 1165
Query 1190 TTATACATATACTATATGAGATTGTGTTACTattttaatttttatgggttttggaggatt 1249
| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1166 T----------------GAGATTGTGTTACTATTATA-TTTTTATGGGTTTTGGAGGATT 1208
Query 1250 ttttaaatttccacatccgtttttaCTTA-TC-ATATACTAGCTTGTTGATTAGGAACAA 1307
|||||||| |||| ||||||||||||||| | ||||||||| || |||| ||||||||
Sbjct 1209 TTTTAAATCTCCATATCCGTTTTTACTTACTATATATACTAGATTATTGAGAAGGAACAA 1268
Query 1308 TGCTCCCGACAATATTGTAAAGTATACTTGTT 1339
|| | || | | |||||||||||| |||||||
Sbjct 1269 TGTTTCCTATA-TATTGTAAAGTAAACTTGTT 1299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52183635650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5