BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56660.1
Length=1821
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474828 jgi|Araly1|474828|fgenesh2_kg.1__4782__AT1G56660.1 1580 0.0
> Ahg474828 jgi|Araly1|474828|fgenesh2_kg.1__4782__AT1G56660.1
Length=1691
Score = 1580 bits (855), Expect = 0.0
Identities = 1228/1397 (88%), Gaps = 69/1397 (5%)
Strand=Plus/Plus
Query 123 AAGACGCAGGAATTGGATCCAAAAGAGAAGGGGGAAAATGTTGAGGTGGAGATGGAAGTG 182
|||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 1 AAGACGCAAGAATTGGATCCAAAAGAAAAGGGAGAGAATGTTGAGGTGGAGATGGAAGTG 60
Query 183 -AAGGCAAAGTCAATTGAGAAGGTTaaagcaaagaaagatgaagagagtagtggaaaatc 241
||| |||| |||| ||||||||| ||| ||||||| | ||| ||||| | || |||||
Sbjct 61 AAAGCCAAA-TCAAGTGAGAAGGTAAAAACAAAGAATGGGGAAAAGAGTGGAGGGAAATC 119
Query 242 ---caag---aaggacaaagaaaagaaaaagggcaa-aaacg-tggactcagaggtaaaa 293
||| ||||| |||||||||| ||||||||| ||| | | |||||||||||||||
Sbjct 120 AAAGAAGAAAAAGGAAAAAGAAAAGACAAAGGGCAAGAAA-GAT-GACTCAGAGGTAAAA 177
Query 294 gaagataaagatg------atgacaaaaagaaagatggaaaaatggtctccaagaaacat 347
||||||||||||| ||||||| ||||||||||||||| | |||||||||||||||
Sbjct 178 GAAGATAAAGATGACAAACATGACAAGAAGAAAGATGGAAAAGTTGTCTCCAAGAAACAT 237
Query 348 gaagaagGCCATGGAGATCTGGAGGTTAAAGAGAGCGATGTGAAAGTGgaagagcatgag 407
|||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||
Sbjct 238 GAAGAAGGCCATGGAGATATGAAGGTTAAAGACAGCGATGTGAAAGTGGAAGAGCATGAG 297
Query 408 aaggaacacaagaagggcaaagagaagaaacacgagga-gt-t-agaa-g-aa-ga--a- 458
|||||||||||||||||||||||||||||||||||||| || | |||| | || || |
Sbjct 298 AAGGAACACAAGAAGGGCAAAGAGAAGAAACACGAGGATGTATCAGAACGAAACGAGGAG 357
Query 459 --a-aagaaggtaaa--aa-g----aagaagaataaaaaagagaaggatgagtcgggtcc 508
| ||||| | ||| || | |||||||| || |||||||||||||| || ||| |
Sbjct 358 TTAGAAGAA-GAAAAGGAAGGTAAAAAGAAGAAGAAGAAAGAGAAGGATGAATCAGGTGC 416
Query 509 agaggaaaaaaaTAAGAAGGCAGATAAAGAGAAGAAACATGAGGATGTATCACaagaaaa 568
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 417 AGAGGGAAAAAATAAGAAGGCAGATAAAGAGAAGAAACATGAGGATGTATCACAACAAAA 476
Query 569 ggaagagttagaagaggaagatggtaaaaagaacaa-gaagaaagagaaagatgaatcag 627
||| |||||||||||||||||||||||||||||||| || ||||| ||| ||||||||||
Sbjct 477 GGAGGAGTTAGAAGAGGAAGATGGTAAAAAGAACAAAGA-GAAAGGGAAGGATGAATCAG 535
Query 628 gtacagaggagaaaaagaagaaaccaaaaaaagaaaagaaacaaaaagaagaatctaaga 687
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||
Sbjct 536 GTACAGAGGAGAAAAAGAAGAAACCAGAAAAAGAAAAGAAACATAAAGAAGAATCCAAGG 595
Query 688 gtaatgaagacaaaaaggtgaagggaaagaaggaaaagggagagaagggtga-ccttgag 746
|||| |||||||| ||| ||||||| ||||||| ||| |||||||||| ||| ||| ||
Sbjct 596 GTAAGGAAGACAAGAAGCTGAAGGGGAAGAAGGGAAATGGAGAGAAGGATGAGCCT-GAC 654
Query 747 aaagaagatgaagagaagaagaaagaacatgatgaaacagatcaagagatgaaagaaaaa 806
||||||||| || |||| ||||| ||| ||||| |||||||||||||||||||||||||
Sbjct 655 AAAGAAGAT-AA-AGAA-AAGAA-GAA--TGATGCAACAGATCAAGAGATGAAAGAAAAA 708
Query 807 gatagtaaaaagaacaagaagaaagagaaagatgaatcatgtgcggaggaaaaaaagaag 866
||| |||| |||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 709 GATGGTAAGAAGAACAAGAAGAAAGAGAAAGATGAATCAGGTACAGAGGAAAAAAAGAAA 768
Query 867 aagcccgataaagagaagaaagagaaagacgaatct-actgagaaggaagacaagaagct 925
|||| || |||||||| ||| |||||||||||| | || || || ||||||||||||||
Sbjct 769 AAGCAAGAGAAAGAGAACAAACAGAAAGACGAAT-TGACGGATAAAGAAGACAAGAAGCT 827
Query 926 gaagggaaagaaaggaaagggagagaagcctgaaaaagaagatgaaggaaagaagacgaa 985
|||||| ||| | || || | || || ||| |||||||| ||||||||||||| ||
Sbjct 828 GAAGGG---GAA-G-AA-GG-AT-GA-GCATGAGAAAGAAGACGAAGGAAAGAAGA--AA 876
Query 986 agaaCATGATGCAACAGAGCAAGAGATGGATGATGAAGCCGCCGATCATaaggagggaaa 1045
||||||||||||||||| || |||||| | || |||| | || ||||||||||||||
Sbjct 877 -GAACATGATGCAACAGATCATGAGATGAAAGAAGAAGAAGTAGAACATAAGGAGGGAAA 935
Query 1046 gaaaaagaagaataaagataaggcgaagaagaaggaaaCCGTCATCGATGAGGTATGTGa 1105
|||||||||||||||||||||||| |||||||||||||||| || || || |||||||
Sbjct 936 GAAAAAGAAGAATAAAGATAAGGCAAAGAAGAAGGAAACCG--AT-GA-GA--TATGTGA 989
Query 1106 gaaagaaacaaaagacaaagatgatgatgaaggagaaaccaagcagaaaaagaataagaa 1165
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 990 GAAAGAAACAAAAGATAAAGATGAGGATGAAGGAGAAACCAAGCAGAAAAAGAATAAGAA 1049
Query 1166 aaaggagaagaagagcgaaaagggcgaaaaagatgtaaaggaagacaagaagaaggagaa 1225
|||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1050 AAAGGAGAAGAAGAACGAAAAGGGCGAAAAAGATGAAAAAAAAGACAAGAAGAAGGAGAA 1109
Query 1226 TCCCCTTGAAACTGAAGTGATGTCaagagatataaaattagaagaaccagaagctgagaa 1285
||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1110 ACCCTTTGAAACTGAAGTGATATCAAGAGATATAAAATTAGAAGAATCAGAAGCTGAGAA 1169
Query 1286 gaaggaagaagatgatactgaagagaagaagaaatctaaagtagaagggggtgagagtga 1345
||||||||||||||| | |||||||||||| |||||||||| |||||| |||||||||||
Sbjct 1170 GAAGGAAGAAGATGACAATGAAGAGAAGAATAAATCTAAAGAAGAAGGCGGTGAGAGTGA 1229
Query 1346 agaggggaagaaaaagaagaagaaagataaaaagaagaacaagaagaaagatacaaagga 1405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 AGAGGGGAAGAAAAAGAAGAAGAAAGATAAAAAGAAGAACAAGAAGAAAGATACAAAGGA 1289
Query 1406 accgaaaatgacggaggacgaagaagagaagaaagaTGATTCTAAGGACGTTaaaataga 1465
| |||||| ||| ||||| |||||||||||||||||| || |||| ||||| ||||||||
Sbjct 1290 AACGAAAAGGACAGAGGATGAAGAAGAGAAGAAAGATCATACTAAAGACGTCAAAATAGA 1349
Query 1466 agggtcaaaagct-aag 1481
||||||||||||| |||
Sbjct 1350 AGGGTCAAAAGCTGAAG 1366
Score = 385 bits (208), Expect = 7e-106
Identities = 284/317 (90%), Gaps = 20/317 (6%)
Strand=Plus/Plus
Query 1471 caaaagctaaggaagaaaagaaagacaaagatgtgaagaaaaagaagGGTGGTAATGACA 1530
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1394 CAAAAACTAAGGAAGAAAAGAAAGACAAAGATGTGAAGAAGAAGAAGGGTGGTAATGACA 1453
Query 1531 TCGGTAAGCTGAAAACGAAGTTGGCGAAGATCGATGAAAAAATAGGAGCCTTAATGGAGG 1590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1454 TCGGTAAGCTGAAAACGAAGTTGGCGAAGATCGATGAAAAAATAGGAGCCTTAATGGAGG 1513
Query 1591 AGAAGGCAGAAATCGAGAATCAGATTAAAGACGCAGAGGGAGAGCAATGATGTGATGATT 1650
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1514 AGAAGGCTGAAATCGAGAATCAGATTAAAGACGCAGAGGGAGAGCAATGATGTGA--A-- 1569
Query 1651 GTGGAACATaaaaaaaTGATGGGAGCAGCTTAATGTTATGTAACTGAACTTGATAATATG 1710
| | || || || ||| || ||||||||||||||||||||| ||||||||
Sbjct 1570 G---A---TA------TG--GG-AGCGGCGTAATGTTATGTAACTGAACTTAATAATATG 1614
Query 1711 GACTTGGCAACATCCACAGAGAAGCT-AAGGCTACATGTCTCTTGGTACATTTGCACTTA 1769
||||| |||||||||| |||||| || |||||||||||| |||||||||| |||||||||
Sbjct 1615 GACTTAGCAACATCCATAGAGAAACTGAAGGCTACATGTTTCTTGGTACAGTTGCACTTA 1674
Query 1770 ACTTAAAtttttttttt 1786
|||| ||||||| ||||
Sbjct 1675 ACTTCAATTTTTCTTTT 1691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68371989775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5