BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G57590.1
Length=1489
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474842 jgi|Araly1|474842|fgenesh2_kg.1__4796__AT1G57590.1 2165 0.0
> Ahg474842 jgi|Araly1|474842|fgenesh2_kg.1__4796__AT1G57590.1
Length=1409
Score = 2165 bits (1172), Expect = 0.0
Identities = 1339/1418 (94%), Gaps = 18/1418 (1%)
Strand=Plus/Plus
Query 78 TCTCCATATAAACCAAGGTATGTGATCAAGTCTAAA-ACATCCATGATCAAGAAGTGTA- 135
||||||||||||||||| | | |||||||||||||| |||||||||||||||||||| |
Sbjct 1 TCTCCATATAAACCAAGTTTTATGATCAAGTCTAAACACATCCATGATCAAGAAGTG-AC 59
Query 136 AAATGAAGAAGCTTCTATGGAGTT-GGATCATTCTCTTCAACATCCATGTAAATGGAATG 194
||||||||||||||||||||| || || |||||||||| ||||||||||||||||| |||
Sbjct 60 AAATGAAGAAGCTTCTATGGA-TTGGGCTCATTCTCTTAAACATCCATGTAAATGGGATG 118
Query 195 ATGATGGAGTTTGATGAAATGGAGTGGTTCACAGTTTTCAATGGAACAAAAG-TGTTTCA 253
||||||||||||||||| ||||| |||||||||| |||||||||||| |||| ||||| |
Sbjct 119 ATGATGGAGTTTGATGATATGGAATGGTTCACAGATTTCAATGGAAC-AAAGATGTTTGA 177
Query 254 GACTCAAAATGATGTTTTTTCTGAAGCTAAGTTTCCTATGGTTGGACTCACTCTGATTCA 313
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TACAGAAAATGATGTTTTTTCTGAAGCTAAGTTTCCTATGGTTGGACTCACTCTGATTCA 237
Query 314 ATCTGCTGCTGCTAAAGGAGCTGTGTGTTTGGATGGAAGTCTTCCCGGATACCATTTGCA 373
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 238 ATCTGCTGCTGCTAAAGGAGCTGTTTGTTTAGATGGAAGTCTTCCCGGATACCATTTGCA 297
Query 374 TCGCGGGTTTGGTTCCGGAGCGAA-CAATTGGCTCGTTCAATTAGAGGGAGGTGGATGGT 432
||||||||||||||| ||||| || ||||||||| |||||||| ||||||||||||||||
Sbjct 298 TCGCGGGTTTGGTTCAGGAGC-AAGCAATTGGCTTGTTCAATTGGAGGGAGGTGGATGGT 356
Query 433 GTGATACCATTAGAAATTGTGTTTACCGTAAAACCACTCGTCGTGGATCTTCTTCATATA 492
|||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 357 GTGATACCGTTAGAAATTGTGTATACCGTAAAACCAGTCGTCGTGGATCTTCTTCATATA 416
Query 493 TGGAGAAAGAGATACCATTTACCGGCATTCTAAGTGATAAAGCCGCGGATAATCCAGACT 552
||||||||| ||||||||||||||||||||||||| || |||||||||| ||||||||||
Sbjct 417 TGGAGAAAGTGATACCATTTACCGGCATTCTAAGTAATCAAGCCGCGGAAAATCCAGACT 476
Query 553 TTTATAACTGGAATAGAGTAAAAGTTCGGTATTGTGACGGTGGATCGTTTAGCGGGGATA 612
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 477 TTTATAACTGGAATAGAGTAAAAGTTCGGTATTGTGACGGTGGATCGTTTAGCGGGGACA 536
Query 613 GCGAAAATAAGGCTGCACAACTTCAGTTTAGAGGAAAGAGAATTTGGTTAGCTGCTATGG 672
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 537 GCGAAAATAAGGCTGCACAACTTCAGTTTAGAGGAATGAGAATATGGTTAGCTGCTATGG 596
Query 673 AAGATTTGATGGCAAAAGGTATGCGTCAAGCTAAGCAGGCTCTGCTCTCTGGATGTTCTG 732
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AAGATTTGATGGCAAAAGGAATGCGTCAAGCTAAGCAGGCTCTGCTCTCTGGATGTTCTG 656
Query 733 CAGGAGGTCTTGCGGTGATTTTACGATGTGATGATTTTGGGAAATTGTTTCCTCCTTCCA 792
| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 657 CTGGAGGTCTTGCGGTGATTTTACGGTGTGATGATTTCGGGAAATTGTTTCCTCCTTCCA 716
Query 793 CCAGAGTGAAATGTTTGAGTGATGCTGGTTTCTTCCTTGATGCCATCGATGTGTCTGGAG 852
| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 717 CTAGAGTGAAATGTCTGAGTGATGCTGGTTTCTTCCTCGATGCCATCGATGTGTCTGGAG 776
Query 853 GTCGATCTCTTAGACGATTATACGCCGGTGTGGTCAGATTACAGAATCTGCAAACCAACC 912
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 777 GTCGATCTCTTAGACGGTTATACGCCGGTGTGGTCAAATTACAGAATCTGCAAACCAAGC 836
Query 913 TTCCTCAGTATTGTGTAAACCGTCTTAATCCCACTTCGTGTTTTTTCCCACAAAACCTAA 972
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 837 TTCCTCAGGATTGTGTAAACCGTCTTAATCCAACTTCGTGTTTTTTCCCACAAAACTTAA 896
Query 973 TCAACCAAGTCAAGACTCCACTTTTTATTCTTAATGCTGCATATGATTCTTGGCAGATTC 1032
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 897 TCAACCAAGTCAAGACTCCACTTTTTATTCTAAATGCTGCATATGATTCATGGCAGATCC 956
Query 1033 AAGAGAGTTTAGCTCCAAAATCTGCAGATCCAAGTGGAAGTTGGAATGATTGTAGACTTA 1092
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 957 AAGAGAGTTTAGCTCCAAAATCCGCAGATCCAAGTGGAAGTTGGAATGACTGTAGACTTA 1016
Query 1093 ACTACGCCAAGTGTAGTGCATCTCAGATCCAATTCTTGCAAGGTTTTAGGACGCGTATGG 1152
||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1017 ACTACGCCAAGTGCACTGCATCTCAGATCCAATTCTTGCAAGGTTTTAGGACGCATATGG 1076
Query 1153 TGAATTTGGTAAAAGGTTTCGCGATGCCAAGTAAGAACGGTGTGTTCCTCAATTCGTGCT 1212
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TGAATTTGGTAAAGGGTTTCGCGATGCCAAGTAAGAACGGTGTGTTCCTCAATTCGTGCT 1136
Query 1213 TTGCTCATTGCCAAACAGAGAGGCATGACACTTGGTTCGCCCAAAACTCTCCAGCTATTA 1272
|||||||||||||||||||||||||||| || ||||||||| |||||||||| || |||
Sbjct 1137 TTGCTCATTGCCAAACAGAGAGGCATGATACATGGTTCGCCAAAAACTCTCCTGCGGTTA 1196
Query 1273 AGAACAAGGGTATTGCAGTAGCTGTGGGAGATTGGTATTTCGAAAGAGGAGGAGCAAAGC 1332
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AGAACAAGGGTATAGCAGTAGCTGTGGGAGATTGGTATTTCGAAAGAGGAGGAGCAAAGC 1256
Query 1333 TCATAGACTGTGCTTATCCTTGTGACAAGACTTGTCACAATTTGGTCTTTAGAAGATAAA 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1257 TCATAGACTGTGCTTATCCTTGTGACAAGACTTGTCACAATTTGGTCTTTAGATGATAAA 1316
Query 1393 ACT-AGTTTTTCTTTGGTATCACAATGT--AtttttttAA-GAAGCATCCATTTATTTAT 1448
|| |||||||||||||||||| ||| | |||||||||| ||||||||||||||||
Sbjct 1317 -CTTAGTTTTTCTTTGGTATCAAAATTTTTATTTTTTTAAAGAAGCATCCATTTATT--- 1372
Query 1449 TCAGGCAACACAATGAAATGAAATAAAACCCATTTGAT 1486
|||||||||||||||||| ||||||||||||||||||
Sbjct 1373 -CAGGCAACACAATGAAATAAAATAAAACCCATTTGAT 1409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55726028435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5