BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G57600.1
Length=1950
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474843 jgi|Araly1|474843|fgenesh2_kg.1__4797__AT1G57600.1 2752 0.0
> Ahg474843 jgi|Araly1|474843|fgenesh2_kg.1__4797__AT1G57600.1
Length=1738
Score = 2752 bits (1490), Expect = 0.0
Identities = 1659/1741 (95%), Gaps = 10/1741 (1%)
Strand=Plus/Plus
Query 1 AGTCGTCTTCTTCGTTTGGATCTCGTCACCGGAGCTACACCGGCGCTTCAGTGCTTGCTT 60
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1 AGTCGTCTTCTTCGTTTGGATCTCGTCACCGAAGCTTCACCGGCGCTTCAGTGCTTGCTT 60
Query 61 CTATCGTCGACTAATAGAACCAGAATCCGATaaaaaaaaaaaaaaaG-T--G-TTGACTC 116
|||||||||||||||||||||||||| ||| ||||| ||| || | | |||||||
Sbjct 61 CTATCGTCGACTAATAGAACCAGAATACGACAAAAACAAATTGTGAGCTGCGTTTGACTC 120
Query 117 AATCAAAGAGAAGTCATGAACACTCACAATAATCGATACGCAAAATGGAAACAGAGAGAG 176
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATCAGAGAGAAGTCATGAACACTCACAATAATCGATACGCAAAATGGAAACAGAGAGAG 180
Query 177 CTTGTTCTTATACTCCTATACGCCATCGCTTTCTATGCTTATGTCGTATGGAGATCGCTT 236
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 181 CTTGTTCTTATACTCTTATACGCCATCGCTTTCTACACTTATGTCGTATGGAGATCGATT 240
Query 237 CGTCTCTCCCACGATCATTACTTCAAGCTCCATGGTTTAGCTTCTGGCTGGCTCATTCCT 296
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 241 CGTCTCTCCCACGATCATTACTTCAAGCTCCATGGTTTAGCTCCTGGTTGGCTCATTCCT 300
Query 297 AATCGACGTAATGATGTTTCTGATGCTCAATGGAGGAACTTTCGTGGAAATTTGCCAATT 356
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 301 AATCGACGCAATGATGTTTCTGATGCTCAATGGAGGAATTTTCGTGGAAATTTGCCGATT 360
Query 357 CTTAGCTTTGTTTTCGCTGTTTTCACTGTGATTGCAAATGGGGTTAGGTCGTTTTTCCA- 415
||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||
Sbjct 361 CTTAGCTTTGTTTTCGCAGTTTTCACTGTGATTGCAAATGGGTTTAGGTCTTTTTTCCAC 420
Query 416 TTTAAGAGCTAAAGGAATGGCTATCTTGTGGCTTTCAATGTCGTTAATATACTTGATATA 475
|| || |||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 421 TTGAA-AGCTAAAGGAATGGCTATCTTGTGGCTTTCGATGTCGTTTATATACTTGATTTA 479
Query 476 CTTACATGGAGCTTGCGTCATTTACATTCTCTCGATTGCAACAGCCAATTTCCTTCTTGT 535
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 CTTACATGGAGCTTGCGTCATTTACATTCTCTCGATTGCAACAGCCAACTTCCTTCTTGT 539
Query 536 TAAGGTTTTTGCACGGACTAGTTACTTTCCTTACATGCTGTGGACTTTCAACATATTTTT 595
|||||||||||||||||| | |||||||||| |||||| ||||| ||||||||||||||
Sbjct 540 TAAGGTTTTTGCACGGACCAAATACTTTCCTTTCATGCTTTGGACGTTCAACATATTTTT 599
Query 596 TCTCTTCTGCAATCGCATTTATGAAGGATATTCTTTCTCCATTTTCGGGCAACAGTTTGA 655
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 TCTCTTCTGCAATCGCATTTATGAAGGATATTCGTTCTCCATTTTCGGGCAACAGTTTGA 659
Query 656 ATTCCTGGATAACTTTCGGGGCACATTTAGATGGCATATATGCTTCAACTTTGTTGTTTT 715
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 660 ATTCCTGGACAACTTTCGGGGCACTTTTAGATGGCATATATGCTTCAACTTTGTTGTTCT 719
Query 716 GCGCATGTTAAGTTTTGGATATGATTATCACTGGAGCCAACTGGATTCTCATTTTGATCA 775
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 720 GCGCATGATAAGTTTTGGATACGATTATCACTGGAGCCAACTGGATTCTCATTTTGATCA 779
Query 776 GGAGAAACACGTAATGCGCTGTTCCTTATGTAAGTTGGGGAAGACTTGCTACGTAGTGCG 835
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 780 GGAGAAACACGTAACACGCTGTTCCTTATGTAAATTGGGGAAGACTTGCTACGTAGTGCG 839
Query 836 ACAGGAGAGAGGTCTAGCAAGTGATAGCTGCAGTTTTTCTCTATACCTTTGTTATTTGGT 895
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 840 ACAGGAGAGAGGTCTAGCAAGTGATAGCTGCAGTTTTTTTCTATACCTTTGTTATTTGGT 899
Query 896 ATATGCACCCTTGTACCTTGCGGGGCCAATTATAAGCTTTAATGCATTTGCTTCTCAGCT 955
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 900 GTATGCACCCTTGTACCTTGCGGGGCCAATCATAAGCTTTAATGCATTTGCTTCTCAGCT 959
Query 956 AGATATGCCACAGAATACTCTTTCATTCAAAGATGTTGCTTGGTATGGAGTGCGTTGGTT 1015
|||||||||||||||| ||| |||||| |||||||||||||||||||||||||| |||||
Sbjct 960 AGATATGCCACAGAATTCTCATTCATTTAAAGATGTTGCTTGGTATGGAGTGCGCTGGTT 1019
Query 1016 ATTCAGCTTCTTGCTGATTGAACTCATGACACACTTATTTTATTACAATGCCTTCGTGAT 1075
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1020 ATTCAGCTTCTTGCTGATTGAACTTATGACACACTTATTTTATTACAATGCCTTTGTGAT 1079
Query 1076 CAGTGGTCTGTGGAGAGAACTATCTCCTGTGGAAATATTTATTGTCGGATACGGAGTACT 1135
||||||||||||||||||||||||||||||||| ||||||||||| ||||| || || ||
Sbjct 1080 CAGTGGTCTGTGGAGAGAACTATCTCCTGTGGAGATATTTATTGTTGGATATGGGGTGCT 1139
Query 1136 AAACTTTATGTGGCTTAAGTTCCTTCTTTTATGGAGATATTTCCGCTTTTGGTCTCTGGT 1195
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AAACTTCATGTGGCTTAAGTTCCTTCTTTTATGGAGATATTTCCGCTTTTGGTCTCTGGT 1199
Query 1196 GAATGGCATTGAAACTGTTGAGAACATGCCGAATTGCATTAACAATTGCTACAGCCTAGA 1255
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1200 GAATGGCATTGAAACTGTTGAGAACATGCCGAATTGCATTAACAATTGCTATAGCCTGGA 1259
Query 1256 A-CTATTCTGGAAAACCTGGCATGCCTCATTTAATAGGTGGCTTATCAGGTATATGTATA 1314
| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1260 ATC-ATTCTGGAAAACCTGGCATGCCTCATTTAATAGGTGGCTCATCAGGTATATGTATA 1318
Query 1315 TTCCTCTAGGTGGATCACGAAGAAAATTTCTGAATGTGTGGGTTGTATTTACATTTGTTG 1374
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1319 TTCCTCTAGGTGGATCACGAAGAAAGTTTCTGAATGTGTGGGTTGTATTTACATTTGTTG 1378
Query 1375 CCATGTGGCATGATTTGGAATGGAAGCTTCTTTCATGGGCATGGTTAACATGTTTATTCT 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CCATGTGGCATGATTTGGAATGGAAGCTTCTTTCATGGGCATGGTTAACATGTTTATTCT 1438
Query 1435 TCATGCCAGAAATGTTACTGAAATCAGCATCCAGTGCATATAAGGTTGAGAGTGCTTTTG 1494
|||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1439 TCATGCCAGAGATGTTACTGAAATCAGCATCCAATGCATATAAGGTTGAAAGTGCTTTTG 1498
Query 1495 GAGAATTCCTCCTTCGTGAACTCAAGGCGTTGTCTGGTGCCGTCACAATCACATGCCTCA 1554
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 GAGAATTTATCCTTCGTGAACTCAAGGCGTTGTCTGGTGCCGTCACAATCACATGCCTCA 1558
Query 1555 TGATTGCAAATCTTGCTGGCTATGTCATTGGACCATCTGGTATAAACTGGATGGTCTCCA 1614
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1559 TGATTGCAAATCTTGCTGGCTATGTCATTGGACCATCAGGTATAAACTGGATGGTCTCCA 1618
Query 1615 GCTTTCTCAAAAGAGAAGGAGTACCTGTTCTGGGCGGCGTGTTCTTTAGCTTGTACGTGG 1674
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 GCTTTCTTAAAAGAGAAGGAGTACCTGTTCTGGGCGGCGTGTTCTTTAGCTTGTACGTGG 1678
Query 1675 GTACAAAGCTGATGTTCCACATCCAAGACTTAAGAAGT-GTGGCGCATAGCCCGAAGTAG 1733
||||||||||||||||||||||||||||||| |||||| | || |||||||||||||||
Sbjct 1679 GTACAAAGCTGATGTTCCACATCCAAGACTTGAGAAGTCG-GGTTCATAGCCCGAAGTAG 1737
Query 1734 C 1734
|
Sbjct 1738 C 1738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73285631380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5