BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G57620.1 Length=1004 Score E Sequences producing significant alignments: (Bits) Value Ahg924398 jgi|Araly1|924398|scaffold_105679.1 1062 0.0 Ahg915005 jgi|Araly1|915005|Al_scaffold_0001_5259 195 7e-49 > Ahg924398 jgi|Araly1|924398|scaffold_105679.1 Length=679 Score = 1062 bits (575), Expect = 0.0 Identities = 628/654 (96%), Gaps = 1/654 (0%) Strand=Plus/Plus Query 133 AAAAATC-TCGATGAAGAAGAAGATGATTCCGACGACGATCTTACTCTCAGCTCTCATTT 191 ||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 10 AAAAAGCATCGATGAAGAAGAAGATGATTCCGACGACGCTCTTACTCTCAGCTCTCATTT 69 Query 192 TCTCTCTATCACCGATCTGTGAAGCTGTGTGGCTTACTGTACCTCACACCGGATCAAAGT 251 ||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 70 TCTCTTTATCGCCGATCTGTGAAGCTGTGTGGCTTACCGTACCTCACACTGGATCAAAGT 129 Query 252 GCGTCTCCGAAGAAATCCAAAGCAACGTCATCGTTTTAGCTGATTACCTTGTTATCTCCG 311 | ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 130 GTGTCTCTGAAGAAATCCAAAGCAACGTCGTCGTTTTAGCTGATTACCTTGTTATCTCCG 189 Query 312 AGGAACATTCTATCTTCCCTACTGTCTCCGTTAAGGTTACAGCACCTTATGGCACCGTGT 371 ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| | Sbjct 190 AGGAACATTCTATCTTCCCTACTGTCTCCGTTAAGGTCACAGCACCTTATGGCAGCGTTT 249 Query 372 TACACCACAGGGAAAATACAACAAACGGTCAGTTTGCATTCACAACCCAAGAATCAGGAA 431 ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 250 TACACCACAAGGAAAATACAACAAACGGTCAGTTTGCATTTACAACCCAAGAATCAGGAA 309 Query 432 CTTACTTGGCGTGTTTTGAGGCCGATGCTAAAAGTCATGGTAACAAAGATTTTAGCATCA 491 | |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 310 CCTACTTGGCCTGTTTTGAGGCCGATGCTAAAAGTCATGGTAACAGAGATTTTAGCATCA 369 Query 492 ACATCGACTGGAAAACTGGAATCGCAGCTAAAGATTGGGACTCCATTGCTAGAAAAGAAA 551 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 370 ACATCGACTGGAAAACTGGAATCGCAGCTAAAGATTGGGACTCCATTGCTAGAAAAGAAA 429 Query 552 AGATCGAGGGTGTAGAGCTGGAGTTTAAGAAACTTGAAGGTGCAGTTGAAGCAATCCATG 611 ||||||||||||||||||| ||| |||||||||||||||||||||| ||||| || |||| Sbjct 430 AGATCGAGGGTGTAGAGCTAGAGCTTAAGAAACTTGAAGGTGCAGTAGAAGCCATACATG 489 Query 612 AAAATCTGATTTACCTCAGAAACAGAGAAGCAGAGATGAGGATTGTGAGTGAAAAAACAA 671 ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 490 AAAATTTAATTTACCTCAGAAACAGAGAAGCAGAAATGAGGATTGTGAGTGAAAAAACAA 549 Query 672 ACTCGAGAGTCGCATGGTACAGTATAATGTCGCTGGGGATTTGCATTGTGGTCTCTGGTT 731 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 550 ACTCGAGAGTCGCATGGTACAGTATAATGTCGCTGGGGATTTGCATTGTGGTCTCTGGTT 609 Query 732 TACAGATTTTGTACTTGAAGCAATACTTTGAAAAGAAGAAGCTTATTTAGATCA 785 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 610 TACAGATTTTGTACTTGAAGCAATACTTTGAAAAGAAGAAGCTTATTTAGATCA 663 > Ahg915005 jgi|Araly1|915005|Al_scaffold_0001_5259 Length=447 Score = 195 bits (105), Expect = 7e-49 Identities = 121/128 (95%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 360 ATGGCACCGTGTTACACCACAGGGAAAATACAACAAACGGTCAGTTTGCATTCACAACCC 419 |||||| ||| ||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 73 ATGGCA--GTG-TACACCACAAGGAAAATACAACAAACGGTCAGTTTGCATTTACAACCC 129 Query 420 AAGAATCAGGAACTTACTTGGCGTGTTTTGAGGCCGATGCTAAAAGTCATGGTAACAAAG 479 |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 130 AAGAATCAGGAACTTACTTGGCGTGTTTTGAGGCCGATGCCAAAAATCATGGTAACAAAG 189 Query 480 ATTTTAGC 487 |||||||| Sbjct 190 ATTTTAGC 197 Score = 69.4 bits (37), Expect = 5e-11 Identities = 41/43 (95%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 517 AGCTAAAGATTGGGACTCCATTGCTAGAAAAGAAAAGATCGAG 559 ||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 195 AGCCAAAGATTGGGACTCCATTGCTAGAAAAGAGAAGATCGAG 237 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37322335743 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5