BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G57770.1 Length=1928 Score E Sequences producing significant alignments: (Bits) Value Ahg314966 jgi|Araly1|314966|fgenesh1_pm.C_scaffold_1003746 2610 0.0 > Ahg314966 jgi|Araly1|314966|fgenesh1_pm.C_scaffold_1003746 Length=1737 Score = 2610 bits (1413), Expect = 0.0 Identities = 1638/1744 (94%), Gaps = 26/1744 (1%) Strand=Plus/Plus Query 59 ATGGCCGCCAATTTCTGCGGCTTGACGCTTCAGTCTCCGTTTCTCTATAACTTTAGTCGC 118 |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| || Sbjct 1 ATGGCCGCCAATTTCTGCGGCTCGACGCTTCAGTCTCCGTTTCTCTGTAACTTTAGACGA 60 Query 119 CCAACGATCAGATCTTCTTCCTTCATACGGTCTTCGTCTTCTTCATCAGCCTCTTCCAAT 178 |||||||||||||||||||||||||||| | ||||||||||||| ||||||||||| Sbjct 61 CCAACGATCAGATCTTCTTCCTTCATAC-G-----GTCTTCTTCATCAACCTCTTCCAAT 114 Query 179 GGCAATC-T----T-AAAGAACCCTTCTCTGGGGAGCCTGAAGCAGATGTTGTGGTAATT 232 ||||||| | | |||||| | |||||||| ||||||||||||||||||||||| ||| Sbjct 115 GGCAATCTTCCCATCAAAGAATCTTTCTCTGGAGAGCCTGAAGCAGATGTTGTGGTTATT 174 Query 233 GGAAGTGGGATAGGAGGATTATGTTGTGGTGCATTGTTAGCTAGATATGATCAGGATGTG 292 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 175 GGAAGTGGCATAGGAGGATTATGTTGTGGTGCATTGTTAGCTAGGTATGATCAGGATGTG 234 Query 293 ATTGTTTTGGAGAGTCATGACCATCCCGGTGGCGCTGCTCATTCCTTTGAGATCAAAGGG 352 ||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 235 GTTGTTTTGGAGAGCCATGACCATCCCGGTGGCGCGGCTCATTCATTTGAGATCAAAGGG 294 Query 353 TACAAGTTTGACTCAGGTCCTTCTCTGTTTTCTGGTTTACAATCGCGAGGTCCTCAAGCA 412 |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 295 TACAAGTTTGACTCAGGTCCTTCTCTGTTTTCTGGTTTGCAATCACGAGGTCCTCAAGCC 354 Query 413 AATCCACTTGCTCAAGTTCTTGATGCTTTAGGGGAATCATTTCCATGTAAG-AAATATGA 471 ||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| Sbjct 355 AATCCACTTGCTCAAGTTCTTGATGCTTTAGGGGAATCACTTCCATGT-AGCAAATATGA 413 Query 472 TTCTTGGATGGTTTACTTACCCGAAGGTGATTTCTTGTCACGAATAGGCCCTACGGATTT 531 ||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||| Sbjct 414 TTCTTGGATGGTTTATTTACCCGAAGGAGATTTCTTGTCACGTATAGGCCCTACCGATTT 473 Query 532 CTTTAAGGATCTTGAGAAATATGCCGGTCCAAGCGCAGTGCAGGAGTGGGAAAAG---C- 587 |||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| | Sbjct 474 CTTTAAGGATCTAGAGAAATATGCCGGTCCTAGCGCAGTCCAGGAGTGGGAAAAGCTTCT 533 Query 588 --T---T--CT-TGGAGCAATACTCCCTCTGTCTTCTGCTGCTATGGCGTTACCACCATT 639 | | || ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 534 TGTGGGTGCCTATGGAGCAATACTCCCACTGTCTTCTGCTGCTATGGCGTTACCACCATT 593 Query 640 GTCTATTCGCGGGGATCTTGGTGTTCTCTCCACAGCTGCTGCTAGATATGCTCCTTCGCT 699 |||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || Sbjct 594 GTCTATTCGCGGGGATCTTGGTGTTCTCTCTACGGCTGCTGCTAGATATGCTCCTTCCCT 653 Query 700 TTTAAAATCTTTTATCAAAATGGGTCCTAAAGGAGCGTTGGGAGCGACAAAACTTCTCCG 759 | ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 654 GATGAAATCTTTTATCAAAATGGGTCCTAAAGGAGCGTTGGGAGCCACAAAGCTTCTCCG 713 Query 760 CCCGTTCTCGGAGATCGTTGATTCTTTGGAGTTAAAAGACCCGTTTATACGAAACTGGAT 819 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 714 CCCGTTCTCGGAGATCGTTGATTCTTTGGAGTTGAAAGATCCGTTTATACGAAACTGGAT 773 Query 820 TGATCTTCTCGCATTCCTGCTCGCAGGGGTCAAATCTGATGGCATACTTTCAGCAGAGAT 879 ||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| Sbjct 774 TGATCTTCTCGCATTTCTTCTCGCAGGGGTCAAATCTGATGGAATACTTTCAGCAGAGAT 833 Query 880 GATCTACATGTTTGCAGAATGGTACAAGCCAGGCTGCACATTGGAGTACCCTATTGATGG 939 ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 834 GATCTACATGTTTGCGGAATGGTACAAGCCAGGCTGCACACTGGAGTACCCTATTGATGG 893 Query 940 CACCGGTGCTGTGGTTGAAGCGCTTGTCCGTGGCTTGGAGAAGTTTGGTGGACGTCTATC 999 | |||||| |||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 894 AAGCGGTGCGGTGGTTGAAGCGCTTGTCCGTGGCTTAGAGAAGTTTGGAGGACGTCTGTC 953 Query 1000 TCTTAAAAGTCATGTCGAAAACATTGTTATCGAGAATGGTAAAGCTGTTGGAGTCAAGCT 1059 |||||| |||||||| || |||||||| |||||| ||||||||||||||||||||||||| Sbjct 954 TCTTAATAGTCATGTTGAGAACATTGTCATCGAGGATGGTAAAGCTGTTGGAGTCAAGCT 1013 Query 1060 AAGGAATGGTCAATTTGTTCGAGCTAGAAAAGCTGTGGTTAGCAATGCATCGATGTGGGA 1119 || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1014 AAAGAATGGTCAATTCATTCGAGCTAGAAAAGCTGTGGTTAGCAATGCATCGATGTGGGA 1073 Query 1120 TACTTTAAAGCTCTTACCTCCAGGAGCTCTCCCAGAATCATATGTAAAAGGTGTGAACAC 1179 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 1074 TACTTTAAAGCTCTTACCTCCAGGAGCTCTCCCAGATTCATACGTAAAAGGTGTGAACAC 1133 Query 1180 AACACCTCAATGTGAATCATTCATGCATCTTCACTTGGGATTCGACGCAGAGGGAATAGC 1239 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1134 AACACCTCAATGTGAGTCATTCATGCATCTTCACTTGGGATTCGACGCAGAGGGAATAGC 1193 Query 1240 AGATGATCTTGAGATTCATCATATCGTTGTGAATGACTGGGACCGCGGTGTGGATGCTGA 1299 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1194 AGATGACCTTGAGATTCATCATATCGTTGTGAATGACTGGGACCGCGGTGTGGATGCTGA 1253 Query 1300 CCAGAATGTGGTTCTGATATCTGTCCCTAGTGTTCTTAGCCCAAACCTTGCACCACCGGG 1359 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 1254 CCAGAATGTGGTTCTGATATCAGTCCCTAGTGTTCTTAGCCCAAACCTTGCGCCACCGGG 1313 Query 1360 AAAACATGTTCTACACGCTTACTGTCCTGGAACCGAACCTTTCGGTCTGTGGGAAGGTCT 1419 ||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||| Sbjct 1314 AAAACATGTTCTACACGCTTACTGTCCTGGAACTGAACCTTTCAGTCTCTGGGAAGGTCT 1373 Query 1420 TGATAGAAGAAGTGCCGAGTACAAGAATCTCAAATCCCAACGGTCCGAGGTGATGTGGAG 1479 ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1374 TGACAGAAGAAGTGCGGAGTACAAGAATCTCAAATCCCAACGGTCTGAGGTGATGTGGAG 1433 Query 1480 AGCGGTTGAGCGGGCATTAGGGCTAGGGTTCAAAAGAGAAAAGTGCGAGGTGAGTTTGGT 1539 |||||| || ||||||||||||| ||||| ||||||||||||||||||||||||||| | Sbjct 1434 AGCGGTGGAACGGGCATTAGGGCCCGGGTTTAAAAGAGAAAAGTGCGAGGTGAGTTTGAT 1493 Query 1540 TGGAACACCATTGACGCATCAGAGGTTTCTAAGGAGGAATAGAGGAACATATGGGCCTGC 1599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1494 TGGAACACCATTGACGCATCAGAGGTTTCTAAGGAGGAATAGAGGAACATATGGGCCTGC 1553 Query 1600 AATAGAGGCAGGTAAAGGTACTTTTCCTGGCCATTCCACTCCCATTCCGCAGCTTTTGTG 1659 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1554 AATAGAGGCTGGTAAAGGTACTTTTCCTGGCCATTCCACTCCCATTCCGCAGCTTTTGTG 1613 Query 1660 TTGCGGTGACTCGACCTTTCCCGGGATCGGAGTTCCTGCAGTGGCAGCTAGCGGCGCGAT 1719 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1614 TTGCGGTGACTCGACCTTTCCCGGGATCGGAGTTCCTGCAGTGGCAGCTAGTGGCGCGAT 1673 Query 1720 TGTGGCGAATTCGCTAGTTCCTGTTTCCAAGCATTCACAGCTTCTTGATGCCATTGGCTT 1779 ||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| Sbjct 1674 TGTGGCGAATTCGCTAGTTCCTGTTTCTAAGCATTCCCAGCTTCTTGATGCTATTGGCTT 1733 Query 1780 GTAG 1783 ||| Sbjct 1734 ATAG 1737 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72447645990 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5