BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G57870.3 Length=1867 Score E Sequences producing significant alignments: (Bits) Value Ahg475455 jgi|Araly1|475455|fgenesh2_kg.2__585__AT1G57870.1 2316 0.0 Ahg471093 jgi|Araly1|471093|fgenesh2_kg.1__1047__AT1G09840.4 1454 0.0 > Ahg475455 jgi|Araly1|475455|fgenesh2_kg.2__585__AT1G57870.1 Length=1829 Score = 2316 bits (1254), Expect = 0.0 Identities = 1439/1525 (94%), Gaps = 26/1525 (2%) Strand=Plus/Plus Query 192 GAAAAAGAAG--AAGATCATCAAATGCGTGATTTTTACTTTTCCGTTCAAGTGATTGAT- 248 |||||||||| |||||||| |||| ||||| |||| ||| ||||||||||||||||| Sbjct 99 GAAAAAGAAGTTGAGATCATCGAATGTGTGATGTTTAATTTACCGTTCAAGTGATTGATC 158 Query 249 CAAGGGAACATAAGCAGCTAGAGACCACACCACTCAGTTATTTCTATCTCATAGTGCTTG 308 ||| |||||||||||| | ||||| || | |||||| ||||| ||| || | | | Sbjct 159 CAA-GGAACATAAGCAACAAGAGATCAGAGCACTCACTTATTGCTA--TC-T--T-C--- 208 Query 309 TGGATGTTCAAGCTATAAGAATGTGCTCGGTGGTTCTATGAATATAT----AGATTGGTG 364 | | |||| |||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 209 T--A----CAAGATATAAGAATGTGCTCGGTGGTTCTATGAATATATAGGAAGACTGGTG 262 Query 365 TTTTGATGGGATGGGACACCAAATTGCTAAGGTTTATGGTGTTATCAATTACTAGTACGT 424 ||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||| Sbjct 263 GTTTGATGGGATGGGACACCTAATTGCTAAGGATTGTGGTGTTATCAATTACTAGTACGT 322 Query 425 GTTATCTTCCGAACAACCACCACCATGGAATCTCATCTGGGAAATGGAGTAGGCAGTTCG 484 ||||||||| |||| | ||||| |||||||||||||||||||||||||| ||||||||| Sbjct 323 GTTATCTTCAGAAC-A--ACCACGATGGAATCTCATCTGGGAAATGGAGTGGGCAGTTCG 379 Query 485 AGATCTGCCAAAAATACAAAGAACACTTCTAGTTCAGTTGATTGGTTGAGCAGAGATATG 544 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 380 AGATCTGCCAAAAATATAAAGAACACTTCTAGTTCAGTTGATTGGTTGAGCAGAGATATG 439 Query 545 CTTGAGATGAAGATAAGGGACAAGACAGAGGCTGATGAGGAGAGAGACAGTGAACCAGAT 604 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 440 CTTGAGATGAAGATAAGGGACAAGACAGAGGCTGATGAGGACAGAGACAGTGAACCAGAT 499 Query 605 ATCATTGATGGAGTTGGTGCAGAACCTGGCCATGTGATCACAACTACACTCCCTGGACGA 664 |||||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||| Sbjct 500 TTCATTGATGGGGTTGGTGCAGAACCTGGTCATGTGATCAGAACTACACTCCGTGGACGA 559 Query 665 AATGGTCAATCAAGACAGACAGTCAGTTACATAGCAGAACACGTAGTCGGGACTGGTTCA 724 ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 560 AATGGTCAATCAAGACAGACAGTCAGTTACATAGCAGAACACGTAGTTGGAACTGGTTCC 619 Query 725 TTCGGAATGGTTTTCCAAGCTAAATGCAGAGAAACTGGGGAGGTTGTTGCCATCAAAAAA 784 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 620 TTTGGAATGGTTTTCCAAGCTAAATGCAGAGAAACTGGGGAGGTTGTTGCCATCAAAAAG 679 Query 785 GTTCTACAAGACAAGCGTTACAAGAACAGAGAATTACAAATTATGCAGATGCTAGACCAT 844 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 680 GTTCTACAAGACAAGCGCTACAAGAACAGGGAATTACAAATTATGCAGATGCTAGACCAT 739 Query 845 CCGAATGTTGTTTGTTTAAAGCATAGCTTCTATTCAAGAACAGAAAATGAAGAGGTTTAT 904 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 740 CCGAATGTTGTTTGTTTAAAGCATAGCTTCTATTCAAGAACAGAAAATGAAGAGGTTTAT 799 Query 905 CTAAATCTTGTCCTTGAGTTTGTTCCCGAGACTGTCAATCGTACTGCCAGAAGCTACAGT 964 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 800 CTAAATCTTGTCCTTGAATTTGTTCCCGAGACTGTCAATCGTACTGCCAGAAGCTACAGT 859 Query 965 AGAATGAACCAGCTGATGCCATTGATATATGTCAAACTCTACACTTACCAGATTTGCAGG 1024 |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 860 AGAATGAACCAGCTGATGCCATTGATATATGTCAAACTCTACGCTTATCAGATTTGCAGG 919 Query 1025 GGGCTTGCTTACCTTCATAATTGCTGTGGTCTTTGTCACCGTGATATAAAGCCCCAAAAC 1084 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 920 GGGCTTGCTTACCTTCATAATTGCTGTGGTCTTTGTCACCGGGATATTAAGCCCCAAAAC 979 Query 1085 CTGCTAGTGAATCCACACACACATCAGCTGAAAATTTGTGATTTTGGGAGTGCAAAAGTG 1144 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 980 CTGCTAGTGAATCCACACACACATCAGCTAAAAATTTGTGATTTTGGGAGTGCAAAAGTG 1039 Query 1145 TTGGTGAAAGGAGAACCCAATATTTCTTACATTTGTTCAAGATACTATCGTGCCCCAGAG 1204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1040 TTGGTGAAAGGAGAACCCAATATTTCTTACATTTGTTCAAGATACTATCGTGCCCCAGAG 1099 Query 1205 CTCATTTTTGGAGCCACCGAGTACACAACTGCAATAGACATATGGTCCACAGGTTGTGTG 1264 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1100 CTCATTTTTGGAGCCACTGAGTACACAACTGCAATAGACATATGGTCCACAGGTTGTGTG 1159 Query 1265 ATGGCTGAACTGCTGCTTGGACAGCCTCTGTTTCCTGGCGAAAGTGGAGTCGATCAACTT 1324 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1160 ATGGCTGAACTGCTGCTTGGACAGCCTCTGTTTCCTGGCGAAAGTGGAGTCGACCAACTT 1219 Query 1325 GTTGAAATCATAAAGGTTTTGGGTACACCAACAAGGGAGGAGATCAAATGCATGAATCCA 1384 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1220 GTTGAAATCATTAAGGTTTTGGGTACACCAACAAGGGAGGAGATCAAATGCATGAATCCA 1279 Query 1385 AACTACACAGAATTTAAATTTCCTCAGATAAAACCTCATCCTTGGCACAAGGTATTCCAG 1444 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 1280 AACTACACAGAATTTAAATTTCCCCAGATAAAACCTCATCCTTGGCACAAGGTTTTCCAA 1339 Query 1445 AAACGTCTGCCACCTGAAGCAGTAGATCTTCTTTGTAGGTTCTTCCAGTATTCTCCTAAT 1504 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1340 AAACGTTTGCCACCTGAAGCAGTAGATCTTCTTTGTAGGTTCTTCCAGTATTCTCCTAAT 1399 Query 1505 TTGAGATGTACAGCGGTGGAAGCTTGTATCCACCCTTTCTTTGATGAGCTAAGAGACCCA 1564 |||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 1400 TTGAGATGCACAGCGGTGGAAGCTTGTATCCATCCGTTCTTTGATGAGCTAAGAGACCCA 1459 Query 1565 AATGCTCGTCTGCCAAACGGCCGGCCACTTCCTCCGCTATTCAATTTTAAACCACAAGAA 1624 || |||||||| ||||||||||||||||||||||| || |||||||||||||| ||||| Sbjct 1460 AACGCTCGTCTTCCAAACGGCCGGCCACTTCCTCCACTTTTCAATTTTAAACCGCAAGAG 1519 Query 1625 CTCTCTGGTATCCCTCCTGAAACTGTGGACCGACTTGTCCCAGAACATGCCCGTAAGCAG 1684 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 1520 CTCTCTGGTATCCCTCCTGAAACCGTGGACCGGCTTGTCCCAGAACATGCCCGTAAGCAG 1579 Query 1685 AACCACTTCATGGCATTACACTCGT 1709 ||||||||||||||||||||||||| Sbjct 1580 AACCACTTCATGGCATTACACTCGT 1604 Score = 113 bits (61), Expect = 4e-24 Identities = 86/97 (89%), Gaps = 6/97 (6%) Strand=Plus/Plus Query 1708 GTGCTTGCGCATCCCTTG-T-CGT-GAAGTGAGG-ATGCGTAAAATACAACACTACTTTG 1763 |||||||||||||| ||| | || |||||| || ||||||| ||||||||||||||||| Sbjct 1735 GTGCTTGCGCATCCTTTGTTGTGTCGAAGTG-GGAATGCGTACAATACAACACTACTTTG 1793 Query 1764 TTAGATATATGATATAGAGGAACATACTTACATTTGC 1800 || ||| ||||||||||||||||||||||||||||| Sbjct 1794 CTACATA-ATGATATAGAGGAACATACTTACATTTGC 1829 > Ahg471093 jgi|Araly1|471093|fgenesh2_kg.1__1047__AT1G09840.4 Length=1749 Score = 1454 bits (787), Expect = 0.0 Identities = 1163/1345 (86%), Gaps = 24/1345 (2%) Strand=Plus/Plus Query 366 TTTGATGGGATGGGACACCAAATT-GCTAAGGTTTATGGTGTTATCAATTACTAGTACGT 424 ||||||||||||||||||| |||| | | || ||||| || |||||| ||||||||||| Sbjct 188 TTTGATGGGATGGGACACC-AATTCACCATGGGTTATGATGCTATCAAATACTAGTACGT 246 Query 425 GTTATCTTCCGAACAACCACCACCATGGAATC-TCAT---CTGGGAAATGGAGTAGGCAG 480 |||||||| ||| | | | ||||| ||| || | |||||||||||||| ||||| Sbjct 247 TTTATCTTCAGAA-TA--AGTATCATGGCATCTTC-TGGACTGGGAAATGGAGTGGGCAG 302 Query 481 TTCGAGATCTGCCAAAAATACAAAGAACACTTCTAGTTCAGTTGATTGGTTGAGC-AGAG 539 |||||||||||||||| | ||||| | ||||||||||||| |||||||||| | |||| Sbjct 303 TTCGAGATCTGCCAAAGGTTTAAAGAGCTCTTCTAGTTCAGTCGATTGGTTGA-CGAGAG 361 Query 540 ATAT-GCTTGAGATGAAGATAAGGGAC-AAGACAGAGGCTGATGAGGAGAGAGACAGTGA 597 || | || ||||| || |||||||||| ||| |||| | ||||| |||||||| ||||| Sbjct 362 ATTTGGC-TGAGACGAGGATAAGGGACAAAG-TAGAGACCGATGATGAGAGAGATAGTGA 419 Query 598 ACCAGATATCATTGATGGAGTTGGTGCAGAACCTGGCCATGTGA-TCACAACTACACTCC 656 ||||||||| |||||||| | |||||| |||||||| ||||||| || ||| ||||||| Sbjct 420 ACCAGATATTATTGATGGGGCTGGTGCTGAACCTGGTCATGTGATTC-GAACCACACTCC 478 Query 657 CTGGACGAAATGGTCAATCAAGACAGACAGTCAGTTACATAGCAGAACACGTAGTCGGGA 716 ||| |||||||||||||||||||||||||| || |||||| ||||||| || ||||| | Sbjct 479 GTGGTCGAAATGGTCAATCAAGACAGACAGTTAGCTACATATCAGAACATGTTGTCGGTA 538 Query 717 CTGGTTCATTCGGAATGGTTTTCCAAGCTAAATGCAGAGAAACTGGGGAGGTTGTTGCCA 776 ||||||| || || |||||||||||||||||||| || |||||||||||||||||||| | Sbjct 539 CTGGTTCCTTTGGCATGGTTTTCCAAGCTAAATGTAGGGAAACTGGGGAGGTTGTTGCTA 598 Query 777 TCAAAAAAGTTCTACAAGACAAGCGTTACAAGAACAGAGAATTACAAATTATGCAGATGC 836 |||| || ||||||||||||||||| |||||||||||||| ||||||| |||||||||| Sbjct 599 TCAAGAAGGTTCTACAAGACAAGCGGTACAAGAACAGAGAGCTACAAATAATGCAGATGC 658 Query 837 TAGACCATCCGAATGTTGTTTG-TTTAAAGCATAGCTTCTAT-TCAAGAACAGAAAATGA 894 |||||||||| ||||| | ||| |||||||||||| || | | ||||||||||| ||||| Sbjct 659 TAGACCATCCCAATGTCG-TTGCTTTAAAGCATAG-TTTTTTCTCAAGAACAGACAATGA 716 Query 895 AGAGGTTTATCTAAATCTTGTCCTTGAGTTTGTTCCCGAGACTGTCAATCGTACTGCCAG 954 |||||||||| | |||||||||||||| ||||| || ||||| ||||||||| ||| || Sbjct 717 AGAGGTTTATTTGAATCTTGTCCTTGAATTTGTGCCTGAGACCGTCAATCGTGTTGCAAG 776 Query 955 AAGCTACAGTAGAATGAACCAGCTGATGCCATTGATATATGTCAAACTCTACACTTACCA 1014 ||| || ||||| | |||||||||||||||||||||||| || ||||||||||| || || Sbjct 777 AAGTTATAGTAGGACGAACCAGCTGATGCCATTGATATACGTTAAACTCTACACCTATCA 836 Query 1015 GATTTGCAGGGGGCTTGCTTACCTTCATAATTGCTGTGGTCTTTGTCACCGTGATATAAA 1074 ||||||||||| |||||||||| | ||||| | || ||||||||||||||||||||| || Sbjct 837 GATTTGCAGGGCGCTTGCTTACATCCATAACTCCTTTGGTCTTTGTCACCGTGATATTAA 896 Query 1075 GCCCCAAAACCTGCTAGTGAATCCACACACACATCAGCTGAAAATTTGTGATTTTGGGAG 1134 ||| ||||||||||| || || |||||||| |||||||| ||||| |||||||| ||||| Sbjct 897 GCCTCAAAACCTGCTGGTAAACCCACACACGCATCAGCTAAAAATATGTGATTTCGGGAG 956 Query 1135 TGCAAAAGTGTTGGTGAAAGGAGAACCCAATATTTCTTACATTTGTTCAAGATACTATCG 1194 |||||||||||||| ||||||||||||||| |||||||||| || |||||||||||||| Sbjct 957 AGCAAAAGTGTTGGTAAAAGGAGAACCCAATGTTTCTTACATCTGCTCAAGATACTATCG 1016 Query 1195 TGCCCCAGAGCTCATTTTTGGAGCCACCGAGTACACAACTGCAATAGACATATGGTCCAC 1254 ||| ||||| || |||||||| |||| || |||||||||||||| || ||||||||||| Sbjct 1017 TGCTCCAGAACTTATTTTTGGTGCCAGTGAATACACAACTGCAATCGATATATGGTCCAC 1076 Query 1255 AGGTTGTGTGATGGCTGAACTGCTGCTTGGACAGCCTCTGTTTCCTGGCGAAAGTGGAGT 1314 |||||||||||||| ||||| || ||||||||||||||||||||||| || || ||||| Sbjct 1077 TGGTTGTGTGATGGCCGAACTACTTCTTGGACAGCCTCTGTTTCCTGGTGAGAGCGGAGT 1136 Query 1315 CGATCAACTTGTTGAAATCATAAAGGTTTTGGGTACACCAACAAGGGAGGAGATCAAATG 1374 |||||||||||||||||||| |||||||| ||||||||||||||||| || ||||| || Sbjct 1137 TGATCAACTTGTTGAAATCATTAAGGTTTTAGGTACACCAACAAGGGAAGAAATCAAGTG 1196 Query 1375 CATGAATCCAAACTACACAGAATTTAAATTTCCTCAGATAAAACCTCATCCTTGGCACAA 1434 ||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||| Sbjct 1197 CATGAATCCAAACTATACAGAATTTAAGTTTCCCCAGATAAAACCTCATCCATGGCACAA 1256 Query 1435 GGTATTCCAGAAACGTCTGCCACCTGAAGCAGTAGATCTTCTTTGTAGGTTCTTCCAGTA 1494 ||| ||||| |||||| ||||||| |||||||| |||||||||||||||||||||||||| Sbjct 1257 GGTGTTCCAAAAACGTTTGCCACCAGAAGCAGTTGATCTTCTTTGTAGGTTCTTCCAGTA 1316 Query 1495 TTCTCCTAATTTGAGATGTACAGCGGTGGAAGCTTGTATCCACCCTTTCTTTGATGAGCT 1554 ||| |||||||||||||||||||| ||||||||||||| || || || ||||||||||| Sbjct 1317 TTCCCCTAATTTGAGATGTACAGCTTTGGAAGCTTGTATTCATCCGTTATTTGATGAGCT 1376 Query 1555 AAGAGACCCAAATGCTCGTCTGCCAAACGGCCGGCCACTTCCTCCGCTATTCAATTTTAA 1614 ||| |||||||| ||||||| || || ||||| ||||||||||| || ||||| ||||| Sbjct 1377 AAGGGACCCAAACACTCGTCTTCCCAATGGCCGACCACTTCCTCCACTTTTCAACTTTAA 1436 Query 1615 ACCACAAGAACTCTCTGGTATCCCTCCTGAAA-CTGTGGACCGACTTGTCCCAGAACATG 1673 ||| ||||| || ||||| ||||||||||||| | ||| || | ||||| ||||| || | Sbjct 1437 ACCGCAAGAGCTATCTGGCATCCCTCCTGAAATC-GTGAACAGGCTTGTACCAGAGCAAG 1495 Query 1674 CCCGTAAGCAGAACCACTTCATGGC 1698 ||||||||||||||| ||||||||| Sbjct 1496 CCCGTAAGCAGAACCTCTTCATGGC 1520 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70124141045 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5