BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G58180.2 Length=1234 Score E Sequences producing significant alignments: (Bits) Value Ahg475428 jgi|Araly1|475428|fgenesh2_kg.2__558__AT1G58180.2 1502 0.0 > Ahg475428 jgi|Araly1|475428|fgenesh2_kg.2__558__AT1G58180.2 Length=1089 Score = 1502 bits (813), Expect = 0.0 Identities = 908/954 (95%), Gaps = 6/954 (1%) Strand=Plus/Plus Query 199 CAAAAATGGCGTTTACACTAGGTGGAAGAGCTCGTCGTCTAGTCTCTGCAACATCAGTTC 258 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 139 CAAAAATGGCGTTTACACTAGGTCGAAGAGCTCGTCGTCTAGTCTCTGCAACATCGGTTC 198 Query 259 ATCAAAATGGTTGCTTACACAAACTGCAACAAATTGGATCGGATCGGTTTCAGCTTGGTG 318 ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 199 ATCAAAATGGTTGTTTACACAAACTGCAACAAACGGGATCGGATCGGTTTCAGCTTGGTG 258 Query 319 AAGCAAAAGCAATAAGATTACTACCCAGGAGAACAAACATGGTTCAAGAATTAGGAATCA 378 |||||||||||||||||||| |||||||||| || ||||||||||||||||||||||| Sbjct 259 AAGCAAAAGCAATAAGATTATTACCCAGGAGGACGAACATGGTTCAAGAATTAGGAAT-T 317 Query 379 GG-GAAGAATTTATGGATCTAAACAGAGAAACAGAGACAAGTTATGATTTTC-TGGATGA 436 || |||||||||||||| ||||||||||||||| | |||||||||||||| ||| ||| Sbjct 318 GGAGAAGAATTTATGGAGAGAAACAGAGAAACAGACAGAAGTTATGATTTTCTTGG-TGA 376 Query 437 AATGAGACACAGATTTCTGAAATTCAAGAGACAAAAGTATCTACCGGAGATAGAAAAGTT 496 |||||||| |||||| ||| |||||||||||||||||||||||| |||||||||||||| Sbjct 377 GATGAGACAGAGATTTATGAGATTCAAGAGACAAAAGTATCTACCCGAGATAGAAAAGTT 436 Query 497 TAAAGCTTTGGCCATAGCTCAATCACCAAAGGTAATGGTGATAGGATGTGCAGATTCAAG 556 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 437 TCAAGCTTTGGCCATAGCTCAATCACCAAAGGTTATGGTGATAGGATGTGCAGATTCAAG 496 Query 557 GGTATGTCCATCTTATGTACTAGGATTTCAACCTGGTGAAGCTTTTACTATCCGAAATGT 616 ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 497 GGTGTGTCCATCTTATGTACTAGGATTTCAACCTGGTGAAGCTTTTACTATACGAAATGT 556 Query 617 CGCCAATCTCGTTACCCCGGTTCAGAATGGACCAACAGAAACCAACTCGGCTCTTGAGTT 676 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 557 CGCTAATCTCGTTACCCCGGTCCAGAATGGACCAACAGAAACCAACTCGGCTCTTGAGTT 616 Query 677 TGCGGTCACCACTCTTCAGGTTGAGAACATTATAGTTATGGGTCATAGCAATTGTGGAGG 736 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 617 TGCGGTCACCACTCTTCAGGTTGAGAACATTATAGTAATGGGTCACAGCAATTGTGGAGG 676 Query 737 AATTGCAGCACTTATGAGTCATCAAAACCACCAAGGGCAACACTCTAGTTTAGTAGAAAG 796 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 677 AATTGCAGCACTTATGAGTCATCAAAACCACCAAGGGCAACACTCAAGTTTAGTAGAGAG 736 Query 797 GTGGGTTATGAATGGGAAAGCCGCTAAGTTAAGAACACAATTAGCTTCATCACATTTATC 856 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 737 ATGGGTTATGAATGGGAAAGCCGCTAAGTTAAGAACACAATTAGCTTCGTCACATTTATC 796 Query 857 CTTTGATGAACAATGCAGAAACTGTGAGAAGGAATCTATAAAGGATTCTGTGATGAATTT 916 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 797 CTTTGATGAACAATGCAGAAACTGTGAGAAGGAATCTATAAAGGATTCTGTGATGAATTT 856 Query 917 GATAACTTATTCATGGATAAGAGATAGAGTAAAGAGAGGTGAAGTCAAGATTCATGGATG 976 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 857 GATAAGTTATTCATGGATAAGAGATAGAGTAAAGACAGGTGAAGTCAAGATTCATGGATG 916 Query 977 TTATTACAATTTGTCAGATTGTAGTCTTGAGAAGTGGAGATTAAGTTCAGACAAG-ACTA 1035 |||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || Sbjct 917 TTATTACAATTTGTCAGATTGTAGTCTTGAGAAGTGGAGACTAAGTTCAGACAAGGA-TA 975 Query 1036 ACTATGGATTCTATATTTCAGACAGAGAGATATGGAGTTGAGTAAATATTGAACAATCCT 1095 || |||||||| |||||||||||||||| |||||||||||||||||||| |||||||| | Sbjct 976 ACAATGGATTCCATATTTCAGACAGAGAAATATGGAGTTGAGTAAATATAGAACAATCTT 1035 Query 1096 CAGTTCTAATATTCAGATGTATCTTTGTACATACGAAATGATATTTACACAATT 1149 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1036 CAGTTCTAATATTCAGATGTATCTTTGTACATATGAAATGATATTTACACAATT 1089 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46090606653 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5