BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G58280.2 Length=1249 Score E Sequences producing significant alignments: (Bits) Value Ahg907635 jgi|Araly1|907635|Al_scaffold_0002_716 1437 0.0 Ahg907634 jgi|Araly1|907634|Al_scaffold_0002_715 289 4e-77 > Ahg907635 jgi|Araly1|907635|Al_scaffold_0002_716 Length=1032 Score = 1437 bits (778), Expect = 0.0 Identities = 947/1027 (92%), Gaps = 18/1027 (2%) Strand=Plus/Plus Query 52 ATGATTCACCAATCAATGACCTCAAATCTTTCATTTTACATTTCTTCTGTGTCTCATCTT 111 |||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| |||| Sbjct 1 ATGAGTCACCAATCAATGACCTCAAATCTTTCATTTTACATTTCCTCTGTTTCTCCTCTT 60 Query 112 TCCTCTCCTCTTCCATCGCTTAGTCGCCTCTCTCTTCGTTGTTGCAGCTCTCTTCCTGCT 171 |||||||||||||||||| || ||||||||||||| ||||||||||||||||||||| || Sbjct 61 TCCTCTCCTCTTCCATCGATTCGTCGCCTCTCTCTCCGTTGTTGCAGCTCTCTTCCTTCT 120 Query 172 CACGATATGGAGACAAAACCAAGTCAAGGCCTTTACCCACTTCACCGTTGCAAAACCATA 231 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CACGATATGGAGGCTAAACCAAGTCAAGGCCTTTACCCACTTCACCGTTGCAAAACCATA 180 Query 232 CATCTGGTGAGACATGCTCAAGG-GATTCACAATGTTGAAGGAGAGAAGAACCATAAGGC 290 ||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||| Sbjct 181 CATCTGGTGAGACATGCTCAAGGAG-TTCACAATGTTGAAGGAGAGAAGAACCATGAGGC 239 Query 291 TTACTTATCTGAGGATCTATTTGATGCACATCTTACACCTCTTGGATGGCAACAAGTTGA 350 |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 240 TTACTTATCTGAGGATCTCTTTGATGCACATCTTACCCCTCTTGGATGGCAACAAGTTGA 299 Query 351 TAATTTACACAAGCATGTTAATGCAAGTGGTATTTCCAATAGAATTGAGTTGGTAGTCGT 410 |||||||| |||||||||||| |||||||| |||||||||||||||||||| || || || Sbjct 300 TAATTTACTCAAGCATGTTAAGGCAAGTGGGATTTCCAATAGAATTGAGTTAGTCGTTGT 359 Query 411 ATCTCCTCTGCTCAGGACTTTGCAAACAGCGGTCGGAACTTTTGGT-GGGGAAGGTTACA 469 || ||||||||||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 360 GTCGCCTCTGCTCAGGACTTTGCAAACTGCGGTCGGAACTTTTG-TCGGGGAAGGTTACA 418 Query 470 AAGATGGTGTAAATACACCTCTGCTTATGACCGCAGGTGCTGGAAACAGCGATCGTCCTG 529 ||||||| | ||| ||||||||||||||||| ||||||| ||||||||||||||||||| Sbjct 419 AAGATGGCCTTAATGCACCTCTGCTTATGACCTCAGGTGCGGGAAACAGCGATCGTCCTG 478 Query 530 CTATATCAAGGTTAAATCGTCCACCGTTCATTGCGGTTGAATCCTGCCGAGAACATTTGG 589 |||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||| Sbjct 479 CTATATCAAGCTTAAATTGTCCACCGTTCATTGCGGTTGAATCCTGTCGAGAACATTTGG 538 Query 590 TATGTTTACTTTTCTACCTTTTGCATGATTGGCATTTTCTTGAGATGAAAACTTTT--GC 647 ||||||||||| || ||||||||||| |||||||||| ||| ||| | || ||||| | Sbjct 539 TATGTTTACTTATCCACCTTTTGCATAATTGGCATTTGCTTAAGA-GTAA-CTTTTTTGA 596 Query 648 AATGTTCTTG-----G-TTCAGGGTGTTCATCCTTGTGACAGAAGAAGCAATATCACCAA 701 |||||||||| | ||||||||||||||||||||||| ||||| | ||||||||||| Sbjct 597 AATGTTCTTGTTTTTGGTTCAGGGTGTTCATCCTTGTGACCGAAGACGTAATATCACCAA 656 Query 702 GTACCGCGAATTATTCCCTGCGATTGATTTTTCATTGATAGAAACTGATGAAGATGTCTT 761 |||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 657 GTACCGCGAAATGTTCCCTGCAATTGATTTTTCATTGATAGAAACTGATGAAGATGTCTT 716 Query 762 GTGGAAGCCTGACATTAGAGAGGAGGATAAAGATATTGCGACCAGAGGCGTGAAGTTCTT 821 ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 717 GTGGAAGCCTGACATTAGAGAGGAGGACCAAGATATTGCGGCCAGAGGCGTGAAGTTCTT 776 Query 822 TAACTGGTTGAGTACAAGGAAAGAAAAAGAGATTGCGGTTGTAACTCATAGTGGGTTCTT 881 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 777 TAACTGGTTGAGTACAAGGAAAGAAAAGGAGATTGCGGTTGTTACTCATAGTGGGTTCTT 836 Query 882 GTATCAAACATTAAACTCATTTGGAAACGATTGTGATCCATCTGTGAAAAACGAGATTTC 941 |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 837 GTATCATACATTAAACTCATTTGGAAACGATTGTGATCCATCTACGAAAAACGAGATTTC 896 Query 942 TAAAAAATTTGTCAACTGTGAACTCCGTTCATTTGTTCTTGTAGATAAATGCATGAGCAG 1001 | |||||||| |||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 897 TTCAAAATTTGCCAACTGTGAACTCCGTTCGGTTGTTCTTGTAGATAAATGCATGAACAG 956 Query 1002 TTCGGATCCTCCAATGACCAACTATCCCGGAA-CAATACTTACCGGAGAAGATGCTTC-T 1059 ||||||||||||| ||| |||||||||||||| || ||| | ||||||||||| |||| | Sbjct 957 TTCGGATCCTCCAGTGAACAACTATCCCGGAAACA-TACCTGCCGGAGAAGAT-CTTCCT 1014 Query 1060 AGTGATA 1066 ||||||| Sbjct 1015 AGTGATA 1021 > Ahg907634 jgi|Araly1|907634|Al_scaffold_0002_715 Length=192 Score = 289 bits (156), Expect = 4e-77 Identities = 178/189 (94%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 238 GTGAGACATGCTCAAGGGATTCACAATGTTGAAGGAGAGAAGAACCATAAGGCTTACTTA 297 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 1 GTGAGACATGCTCAAGGGATTCACAATGTTGAAGGAGAGAAGAACAATGAGGCTTACTTA 60 Query 298 TCTGAGGATCTATTTGATGCACATCTTACACCTCTTGGATGGCAACAAGTTGATAATTTA 357 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCTGAGGATCTCTTTGATGCACATCTTACACCTCTTGGATGGCAACAAGTTGATAATTTA 120 Query 358 CACAAGCATGTTAATGCAAGTGGTATTTCCAATAGAATTGAGTTGGTAGTCGTATCTCCT 417 |||||||||||||| |||||||| |||| ||||||||||||||| || || || || ||| Sbjct 121 CACAAGCATGTTAAGGCAAGTGGAATTTTCAATAGAATTGAGTTAGTCGTTGTGTCGCCT 180 Query 418 CTGCTCAGG 426 ||||||||| Sbjct 181 CTGCTCAGG 189 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46662450408 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5