BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G58290.1 Length=2083 Score E Sequences producing significant alignments: (Bits) Value Ahg475445 jgi|Araly1|475445|fgenesh2_kg.2__575__AT1G58290.1 3206 0.0 Ahg471105 jgi|Araly1|471105|fgenesh2_kg.1__1059__AT1G09940.1 1192 0.0 Ahg933667 jgi|Araly1|933667|scaffold_401655.1 852 0.0 > Ahg475445 jgi|Araly1|475445|fgenesh2_kg.2__575__AT1G58290.1 Length=2047 Score = 3206 bits (1736), Expect = 0.0 Identities = 1973/2081 (95%), Gaps = 41/2081 (2%) Strand=Plus/Plus Query 1 AGCCTCAAATCTGACAAATCAT-ATTCACAGCGA--TCTCCTTCTTCCACATCGCAACCC 57 |||||||||||||||||||||| | ||||| ||| |||||||||||||||||||||||| Sbjct 1 AGCCTCAAATCTGACAAATCATCA-TCACAACGATCTCTCCTTCTTCCACATCGCAACCC 59 Query 58 AATCCCTCTCTGTCTCTTCCTCAATTCTTATTCTCTCTCGCAAAGGTTTGGTTTTTTGAA 117 |||||||||||| || | | ||| || | |||||||| ||| |||||||||||||| | Sbjct 60 AATCCCTCTCTG--TC-T-C-GAATCCTGA-TCTCTCTCTCAAGGGTTTGGTTTTTTGGA 113 Query 118 GAC--AGAGAGGAGATTTGAGATTTTGGGTTTCAATGGCGGTTTCAAGTGCTTTCGTTGG 175 ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 114 GACAAAGAGAGGAGATTTGAGA-TTTGGGTTTCAATGGCGGTTTCAAGTGCTTTCGTTGG 172 Query 176 TTGTCCAAAGCTTGAGACTTTATTGAATCACCATAATCTATCTCCTTCTTCTTCTTCTTC 235 ||||||||||||||||||||||||||||||||||||||||||| | ||||||| || | Sbjct 173 TTGTCCAAAGCTTGAGACTTTATTGAATCACCATAATCTATCT-C--CTTCTTC-TC--C 226 Query 236 GTCCTCTGTTTCACAGACACCATTGGGTCTTAATGGGGTTCGTGTTCTTCCGAAGAACAA 295 |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 227 GTCCTCTGTTTCACAGACACCATTGGGTCTTAATGGGGTTCGTG----T----------- 271 Query 296 TAGAACCAGACGAGGTTTGATCCAAAAAGCTCGTTGTGAGCTCTCTGCTTCTTCTGATTC 355 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 272 TAGAACCAGACGAGGTTTGATCCAAAAAGCTCGTTGTGAGCTCTCTG---CTTCTGATTC 328 Query 356 TGCGTCTAATGCAGCTAGCATCTCTGCTCTTGAACAACTCAAGAACTCTGCAGCTGATCG 415 ||| |||||||| || |||||||||||||||||||||||||||||||||||| ||||| | Sbjct 329 TGCTTCTAATGCTGCAAGCATCTCTGCTCTTGAACAACTCAAGAACTCTGCAACTGATAG 388 Query 416 ATATACAAAGGAAAGAAGCAGTATTGTTGTGATTGGACTTAGTATTCACACAGCTCCTGT 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 389 ATATACAAAGGAAAGAAGCAGTATTGTTGTGATTGGACTTAGTATTCACACAGCTCCTGT 448 Query 476 TGAGATGCGTGAGAAGCTTGCTATACCTGAAGCTGAATGGCCAAGAGCTATTGCTGAATT 535 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 449 TGAGATGCGTGAGAAGCTTGCTATACCAGAAGCTGAATGGCCAAGAGCTATTGCTGAATT 508 Query 536 GTGTGGTTTGAATCATATTGAAGAAGCTGCTGTGCTTAGTACTTGTAACCGTATGGAGAT 595 ||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| Sbjct 509 GTGCGGTTTGAATCATATCGAAGAAGCTGCGGTGCTTAGTACTTGTAATCGTATGGAGAT 568 Query 596 TTATGTTTTAGCTTTATCTCAGCATCGTGGAGTTAAAGAAGTTACTGAATGGATGTCAAA 655 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 569 TTATGTTTTAGCTTTATCTCAGCATCGTGGAGTTAAAGAAGTGACTGAGTGGATGTCAAA 628 Query 656 GACGAGTGGGATCCCAGTTTCAGAGATTTGTCAACACCGTTTTCTGTTGTACAACAAGGA 715 ||||||||||||||| ||||| ||||||||| | |||||||||||||||||||||||||| Sbjct 629 GACGAGTGGGATCCCTGTTTCGGAGATTTGTGAGCACCGTTTTCTGTTGTACAACAAGGA 688 Query 716 TGCTACACAGCATATATTTGAAGTCTCAGCTGGTCTTGACTCTCTTGTCCTAGGAGAAGG 775 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 689 TGCTACACAGCATATATTTGAAGTCTCAGCTGGTCTTGACTCTCTTGTCCTAGGAGAAGG 748 Query 776 TCAGATCCTTGCACAGGTGAAACAAGTTGTGAAAGTTGGTCAAGGAGTGAATGGCTTTGG 835 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 749 TCAGATTCTTGCACAGGTGAAACAAGTTGTGAAAGTTGGCCAAGGAGTGAATGGCTTTGG 808 Query 836 GAGGAATATCAGCGGGCTGTTTAAACACGCGATAACTGTTGGTAAGCGTGTTAGAACAGA 895 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 809 GAGGAATATCAGCGGGTTGTTTAAACACGCGATAACTGTTGGTAAGCGTGTTAGAACAGA 868 Query 896 GACAAATATTGCTTCTGGTGCGGTTTCGGTTAGCTCAGCTGCTGTTGAACTTGCTCTGAT 955 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 869 GACAAACATTGCTTCTGGGGCGGTTTCGGTTAGCTCAGCTGCTGTTGAACTTGCTCTGAT 928 Query 956 GAAGCTTCCGCAGTCTTCAAACGTATCTGCTAGGATGTGTGTAATTGGCGCTGGAAAAAT 1015 |||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 929 GAAGCTTCCGCAATCTTCACACGCATCTGCTAGGATGTGTGTAATTGGCGCTGGAAAAAT 988 Query 1016 GGGGAAGCTTGTGATTAAGCATTTGATGGCTAAGGGTTGCACAAAAGTGGTGGTAGTCAA 1075 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 989 GGGGAAGCTTGTGATTAAGCATATGATGGCTAAGGGTTGCACAAAAGTGGTGGTGGTCAA 1048 Query 1076 CAGAAGTGAAGAGAGGGTTTCAGCTATCCGTGAGGAGATGCCTGGTATTGAGATTATATA 1135 ||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 1049 CAGAAGTGAAGAGAGAGTTTCAGCTATTCGTGAGGAGATGCCGGGTATTGAGATTATATA 1108 Query 1136 TCGACCTCTTGATGAGATGCTAGCTTGTGCTTCAGAAGCGGATGTTGTGTTTACCAGCAC 1195 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1109 TCGACCTCTTGATGAGATGCTAGCTTGTGCTGCAGAAGCGGATGTTGTGTTTACCAGCAC 1168 Query 1196 AGCCTCTGAGACGCCATTGTTCTTAAAGGAGCATGTAGAGAATCTCCCTCAAGCTTCTCC 1255 ||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct 1169 AGCTTCTGAGACGCCATTGTTCTTAAAGGAGCATGTGGAGACTCTCCCTCAAGCTTCTCC 1228 Query 1256 AGAGGTTGGAGGACTGAGGCATTTTGTTGACATCTCTGTTCCGAGAAATGTTGGATCTTG 1315 |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct 1229 AGAGGTTGGAGGACTGAGGCTTTTTGTTGACATCTCTGTTCCGAGAAATGTCGGATCTTG 1288 Query 1316 TGTTGGTGAAGTAGAAACAGCACGGGTTTACAATGTGGACGATCTCAAAGAAGTTGTTGC 1375 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 1289 TGTTGGTGAAGTAGAAACCGCGCGGGTTTACAATGTGGACGATCTCAAAGAAGTTGTTGC 1348 Query 1376 TGCCAACAAAGAAGACAGGATGAGGAAAGCAATGGAAGCTCAAACCATAATCACAGAGGA 1435 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1349 TGCCAACAAAGAAGACAGGTTGAGGAAAGCAATGGAAGCTCAAACCATAATCACAGAGGA 1408 Query 1436 ATCCACACAGTTTGAAGCATGGAGGGATTCATTGGAGACGGTTCCAACGATCAAGAAGTT 1495 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1409 ATCCACACAGTTTGAAGCATGGAGGGATTCATTGGAGACGGTTCCAACGATCAAGAAGTT 1468 Query 1496 AAGAGCTTATGCAGAGAGAATCAGAGTGGCAGAGCTCGAGAAGTGCATGTCCAAAATGGG 1555 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1469 AAGAGCTTATGCAGAGAGAATCAGAGTGGCAGAGCTAGAGAAGTGCATGTCCAAAATGGG 1528 Query 1556 AGATGATATCAACAAGAAAACAACGAGAGCGGTTGATGACTTAAGCCGAGGTATCGTGAA 1615 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 1529 AGATGACATCAACAAGAAAACAACAAGAGCGGTTGATGACTTAAGCCGAGGTATTGTGAA 1588 Query 1616 CAGATTCTTACATGGTCCAATGCAGCATTTGAGATGTGACGGAAGTGACAGTAGAACGCT 1675 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1589 CAGATTCTTACATGGTCCAATGCAGCATTTGAGATGTGACGGGAGTGATAGTAGAACGCT 1648 Query 1676 GAGCGAGACCCTTGAGAATATGCATGCTTTGAACAGAATGTACGGTCTTGAGAAAGACAT 1735 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1649 AAGCGAGACCCTTGAGAATATGCATGCTTTGAACAGAATGTACGGGCTTGAGAAAGACAT 1708 Query 1736 TTTGGAGGAAAAGCTTAAGGCAATGGCGGAACAACAACAGAAGTAAAAGAGAAAAATAAG 1795 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 1709 TTTGGAGGAAAAGCTTAAGGCAATGGCGGAACAACAACAGAAGTAAAAGAGAAAAAGA-G 1767 Query 1796 AAGATGTTCATCTCTTTTGACA--TATAAGATTAGCTTCCCCACAAACTCTGAGTAAATT 1853 |||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||| Sbjct 1768 AAGATGTTCATCTCTTTTGACAGATATAAGATTAGCTTCCCCGCAAACTC-GAGTAAATT 1826 Query 1854 GCATAGATCCTATAGCGATGGATCTATTTGATTCATTTAATTTGTGTGCAAGAGACTAAC 1913 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1827 GCATAGATCCTATAGCTATGGATCTATTTGATTCATTTAATTTGTGTGCAAGAGACTAAC 1886 Query 1914 AATTCTATCGTCAAGTGTAAGTGTTGTGAAGCTATAAGCGAGCTTGTTGCATGTTTGTTG 1973 | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1887 ATTTCTATTGTCAAGTGTAAGTGTTGTGAAGCTATAAGCGAGCTTGTTGCATGTTTGTTG 1946 Query 1974 CTTCATAGACTCGAGTGTAATGGTATTGGTCCCAGTATCGTTACATATATGTAATAATGT 2033 |||||||||||||||||| | |||||| ||| |||| |||||||||| ||||||||||| Sbjct 1947 CTTCATAGACTCGAGTGTTACAGTATTGATCCAAGTACCGTTACATATTTGTAATAATGT 2006 Query 2034 ATAAACTTTGGTTCTTGCAATATAGAGAAATGtttttttCT 2074 |||||||||||||| |||| ||||||||||||||||||||| Sbjct 2007 ATAAACTTTGGTTCATGCAGTATAGAGAAATGTTTTTTTCT 2047 > Ahg471105 jgi|Araly1|471105|fgenesh2_kg.1__1059__AT1G09940.1 Length=2008 Score = 1192 bits (645), Expect = 0.0 Identities = 1152/1394 (83%), Gaps = 46/1394 (3%) Strand=Plus/Plus Query 353 TTCTGCGTCTAATGCAGCTAGCATCTCTGCTCTTGAACAACTCAAGAAC-TCTGC-AGCT 410 |||| ||||||| |||||||||||||| ||||| || || || ||| || ||||| | | Sbjct 413 TTCTCCGTCTAAGGCAGCTAGCATCTCAGCTCTCGAGCAGCTTAAG-ACTTCTGCTA-TT 470 Query 411 GATCGATATACAAAGGAAAGAAGCAGTATTGTTGTGATTGGACTTAGTATTCACACAGCT 470 || ||||| || |||||||||||||| ||| |||||||||| ||||| || ||||||||| Sbjct 471 GACCGATACACTAAGGAAAGAAGCAGCATTATTGTGATTGGGCTTAGCATCCACACAGCT 530 Query 471 CCTGTTGAGATGCGTGAGAAGCTTGCTATACCTGAAGCTGAATGGCCAAGAGCTATTGCT 530 ||||||||||||||||||||||||||||| || ||||||||||||||| |||| || ||| Sbjct 531 CCTGTTGAGATGCGTGAGAAGCTTGCTATTCCAGAAGCTGAATGGCCACGAGCGATCGCT 590 Query 531 GAATTGTGTGGTTTGAATCATATTGAAGAAGCTGCTGTGCTTAGTACTTGTAACCGTATG 590 |||||||||||||||||||||||||||||||||||||| || ||||| || ||||| ||| Sbjct 591 GAATTGTGTGGTTTGAATCATATTGAAGAAGCTGCTGTCCTCAGTACCTGCAACCGAATG 650 Query 591 GAGATTTATGTTTTAGCTTTATCTCAGCATCGTGGAGTTAAAGAAGTTACTGAATGGATG 650 ||||||||||| || ||| |||| |||||||||||||| |||||||||||||| |||||| Sbjct 651 GAGATTTATGTCTTGGCTCTATCACAGCATCGTGGAGTCAAAGAAGTTACTGAGTGGATG 710 Query 651 TCAAAGACGAGTGGGATCCCAGTTTCAGAGATTTGTCAACACCGTTTTCTGTTGTACAAC 710 | ||||| ||||| ||||| ||||| || || ||||| || |||||||| ||||||||| Sbjct 711 GCTAAGACAAGTGGAATCCCGGTTTCCGAAATCTGTCAGCATCGTTTTCTATTGTACAAC 770 Query 711 AAGGATG-CTACACAGCATATATTTGAAGTCTCAGCTGGTCTTGACTCTCTTGTCCTAGG 769 ||||| | | ||||| |||||||||||||||||||||||||| ||||| |||||| |||| Sbjct 771 AAGGACGTC-ACACAACATATATTTGAAGTCTCAGCTGGTCTAGACTCCCTTGTCATAGG 829 Query 770 AGAAGGTCAGATCCTTGCACAGGTGAAACAAGTTGTGAAAGTTGGTCAAGGAGTGAATGG 829 |||| |||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||| Sbjct 830 AGAAAATCAGATACTTGCACAGGTTAAACAAGTTGTGAAAGTAGGTCAAGGAGTCAATGG 889 Query 830 CTTTGGGAGGAATATCAGCGGGCTGTTTAAACACGCGATAACTGTTGGTAAGCGTGTTAG 889 ||||||||||| || || ||||| ||||||||||| || || ||||| |||||||| || Sbjct 890 GTTTGGGAGGAACATTAGTGGGCTATTTAAACACGCAATCACAGTTGGGAAGCGTGTCAG 949 Query 890 AACAGAGACAAATATTGCTTCTGGTGCGGTTTCGGTTAGCTCAGCTGCTGTTGAACTTGC 949 ||||||||||||||| ||| |||| || ||||| |||||||| ||||| || |||||||| Sbjct 950 AACAGAGACAAATATCGCTGCTGGGGCTGTTTCTGTTAGCTCGGCTGCAGTCGAACTTGC 1009 Query 950 TCTGATGAAGCTTCC-GCAGTCTTCAAACG--T-ATCTGCTAGGATGTGTG-TAATTGGC 1004 ||| ||||| ||||| | | ||||| | | | |||||||||||||| || ||||||| Sbjct 1010 TCTCATGAAACTTCCCGAA-TCTTCTCATGCATCATCTGCTAGGATGT-TGGTAATTGGT 1067 Query 1005 GCTGGAAAAATGGGGAAGCTTGTGATTAAGCATTTGATGGCTAAGGGTTGCAC-AAAAGT 1063 |||||||| ||||| |||||||| || ||||| ||| | ||||| |||||||| |||| | Sbjct 1068 GCTGGAAAGATGGGAAAGCTTGTAATCAAGCACTTGGTTGCTAAAGGTTGCACCAAAA-T 1126 Query 1064 GGTGGTAGTCAA-CAGAAGTGAAGAGAGGGTTTCAGCTATCCGTGAGGAGATGCC-T--G 1119 |||||| || || | |||||||||||| ||| ||||||| || ||||||||||| | | Sbjct 1127 GGTGGTTGTGAATC-GAAGTGAAGAGAAAGTTGCAGCTATTCGCGAGGAGATGCCATATG 1185 Query 1120 GTATTGAGATTATATATCGACCTCTTGATGAGATGCTAGCTTGTGCTTCAGAAGCGGATG 1179 || |||||||||| ||| ||| ||||||||||||||| ||||||| | ||||| |||| Sbjct 1186 GTGTTGAGATTATTTATAAACCCCTTGATGAGATGCTATCTTGTGCAGCTGAAGCCGATG 1245 Query 1180 TTGTGTTTACCAGCACAGCCTCTGAGACGCCATTGTTCTTAAAGGAGCATGTAGAGAATC 1239 | || ||||| |||||||| |||||||| ||||| ||||| |||||||| ||||||| || Sbjct 1246 TAGTCTTTACTAGCACAGCTTCTGAGACACCATTATTCTTGAAGGAGCAAGTAGAGACTC 1305 Query 1240 TCCCTCAAGCTTCTCCAGAGGTTGGAGGACTGAGGCATTTTGTTGACATCTCTGTTCCGA 1299 |||||| | || |||| | ||| ||| | ||| ||||| ||||||||||| | Sbjct 1306 TCCCTCCTG-TT----AGAGATACGAG-ACT----C-TTT-GTTGATATCTCTGTTCCTA 1353 Query 1300 GAAATGTTGGATCTTGTGTTGGTGAAGTAGAAACAGCACGGGTTTACAATGTGGACGATC 1359 ||||||| || ||||| || | |||| |||| |||||||||| ||| ||||| || | Sbjct 1354 GAAATGTCGGGTCTTGCGTCGCTGAAATAGATGGTGCACGGGTTTTCAACGTGGATGACC 1413 Query 1360 TCAAAGAAGTTGTTGCTGCCAA-CAAAGAAGACAGGATGAGGAAAGCAATGGAAGCTCAA 1418 |||| ||||| ||| |||| || ||| ||||||||| |||||||||||||||||||||| Sbjct 1414 TCAAGGAAGTCGTTACTGCAAATCAA-GAAGACAGGGTGAGGAAAGCAATGGAAGCTCAG 1472 Query 1419 ACCATAATCACAGAGGAATCCACACAGTTTGAAGCATGGAGGGATTCATTGGAGACGGTT 1478 | ||||| ||||| ||||| | ||| |||||||||||||||||||| ||||||||||| Sbjct 1473 GCTATAATTACAGATGAATCGAAACACTTTGAAGCATGGAGGGATTCGCTGGAGACGGTT 1532 Query 1479 CCAACGATCAAGAAGTTAAGAGCTTATGCAGAGAGAATCAGAG-TGGCAGAGCTCGAGAA 1537 ||||| |||||||| ||||| | ||| |||||||||| | || || ||||| | ||||| Sbjct 1533 CCAACAATCAAGAAATTAAGGGGATATACAGAGAGAATTATAGCTG-CAGAGATTGAGAA 1591 Query 1538 GTGCATGTCCAAAAT-GGGAGAT-GATATCAACAAGAAAACAACGAGAG-CGGTTGATGA 1594 | | || || |||| ||| || || || |||||||| | || | | || ||||| Sbjct 1592 ATTCTTG-CCGAAATCGGGC-ATTGAGATGAACAAGAAGTTGA-GAAAATCAGTAGATGA 1648 Query 1595 -CTTAAGCCGAGGTATCGTGAACA-GATTCTTACATGGTCCAATGCAGCATTTGAGATGT 1652 || || ||||||||| ||||||| | | || || ||||||||||||||||||||||| Sbjct 1649 TCT-AATCCGAGGTATAGTGAACAAGCTCCTG-CACGGTCCAATGCAGCATTTGAGATGC 1706 Query 1653 GACGGAAGTGACAGTAGAACGCTGAGCGAGACCCTTGAGAATATGCATGCTTTGAACAGA 1712 || || || || || ||||| ||||| ||||| || ||||| ||||| ||| ||||||| Sbjct 1707 GATGGGAGCGATAGCAGAACACTGAGTGAGACACTGGAGAACATGCAGGCTCTGAACAGG 1766 Query 1713 ATGTACGGTCTTGA 1726 ||||| || ||||| Sbjct 1767 ATGTATGGACTTGA 1780 > Ahg933667 jgi|Araly1|933667|scaffold_401655.1 Length=1630 Score = 852 bits (461), Expect = 0.0 Identities = 1055/1334 (79%), Gaps = 71/1334 (5%) Strand=Plus/Plus Query 415 GATATACAAAGGAAAGAAGCAGTATTGTTGTGATTGGACTTAG-TATTCACACAGCTCCT 473 |||| |||| ||| |||||||| ||||| |||||||| ||||| || ||||| |||| || Sbjct 253 GATACACAAGGGAGAGAAGCAGCATTGTGGTGATTGGGCTTAGCTA-TCACAAAGCTACT 311 Query 474 GTTGAGATGCGTGAGAAGCTTGCTATACCTGAAGCTGAATGGCCAAGAGCTATTGCTGAA 533 | |||||||||||||||||||| || |||||||||||||||||| |||||||| || | Sbjct 312 CTAGAGATGCGTGAGAAGCTTGCCATTCCTGAAGCTGAATGGCCACGAGCTATTACTCAG 371 Query 534 TTGTGTGGTTTGAATCATATTGAAGAAGCTGCTGTGCTTAGTACTTGTAACCGTATGGAG 593 ||||| | ||||||||| ||||||||||||||||| || ||||| || |||||||| ||| Sbjct 372 TTGTGCGCTTTGAATCACATTGAAGAAGCTGCTGTTCTCAGTACCTGCAACCGTATCGAG 431 Query 594 ATTTATGTTTTAGCT-TTATCTCAG-CATCGTGGAGTTAAAGAAGTTACTGAATGGATGT 651 |||||||||| ||| || |||| | || ||||| || |||||||| ||||| ||||||| Sbjct 432 ATTTATGTTTCCGCTCTT-TCTC-GCCACCGTGGTGTCAAAGAAGTCACTGACTGGATGT 489 Query 652 CAAAGACG-AGTGGGATCCCAGTTTCAGAGATTTGTCAACACCGTTTTCTGTTGTACAAC 710 | |||| | ||||| || |||||||| || || ||||| ||||| ||||||||||||||| Sbjct 490 CTAAGA-GAAGTGGAATTCCAGTTTCTGACATCTGTCATCACCGGTTTCTGTTGTACAAC 548 Query 711 AAGGATGCTACACAGCATATATTTGAAGTCTCAGCTGGTCTTGACTCTCTTGTCCTAGGA 770 || || || ||||| ||| ||||| ||||||| |||||||| || ||||||||| ||||| Sbjct 549 AAAGACGCCACACAACATCTATTTCAAGTCTCCGCTGGTCTGGAATCTCTTGTCATAGGA 608 Query 771 GAAGGTCAGAT-CCTTGCACAGGTGAAACAAGTTGTGAAAGTTGGTCAAGGAGTGAATGG 829 ||| |||||| | | ||||||| |||||||||| ||||| | || || | || || Sbjct 609 GAAAATCAGATACAAT-CACAGGTTAAACAAGTTGAGAAAG-TAGTTAAACA-ACAA-GG 664 Query 830 CTTTGGGAGGAATATCAGCGGGCTGTTT-AAACACGCGAT-AACTGTTGGTAAGCGTGTT 887 |||||||||| |||||| | ||| ||| ||| | || || || | ||| |||||||| Sbjct 665 GTTTGGGAGGATTATCAGTGCGCTATTTGAAA-AGGCAATCAA-GGCTGGAAAGCGTGTC 722 Query 888 AGA-ACAGAGACAAATATTGCTTCTGGTGCGGTTTCGGTTAGCTCAGCTGCTGTTGAACT 946 ||| | ||||||||| || || ||||| || ||||| |||||||| ||||| | ||||| Sbjct 723 AGAGA-AGAGACAAACATCGCGTCTGGGGCTGTTTCCGTTAGCTCTGCTGCCATCGAACT 781 Query 947 TGCTCTGA-TGAAGCTTCC-GCAGTCTTCAAACGTATCTGCTAGGATG-TGTGTAATTGG 1003 |||||| | | |||||||| | | || | | | |||||||| |||| || |||||||| Sbjct 782 TGCTCTCACT-AAGCTTCCAGGA-TC-TGTATC--ATCTGCTATGATGTTG-GTAATTGG 835 Query 1004 CGCTGGAAAAATGGGGAAGCTTGTGATTAAGCATTTGATGGCTAAGGGTTGCAC-AAAAG 1062 || |||| |||||||||||||| || ||||| || | ||||| |||||||| ||| Sbjct 836 TGCAGGAACGATGGGGAAGCTTGTAATCAAGCACCTGGTTGCTAAAGGTTGCACTGAAA- 894 Query 1063 TGGTGG-TAGTCAACAGAAGTGAAGAGAGGGTTTCAGCTATCCGTGAGGAGAT---GCCT 1118 |||||| || | ||| |||| |||||| ||| |||||||||| ||| |||| |||| Sbjct 895 TGGTGGTTA-TGAACCGAAGCCAAGAGAAAGTTGCAGCTATCCGCGAGAAGATGCCGCCT 953 Query 1119 GGTATTGAGATTATATATCGACCTCTT-GATGAGATGCTAGCTTGTGCTTCAGAAGCGGA 1177 || || ||||||| ||| |||| ||| ||||||||||||||||||||||||||||| | Sbjct 954 GGCGTTAAGATTATCTATAGACC-CTTAGATGAGATGCTAGCTTGTGCTTCAGAAGCCAA 1012 Query 1178 TGTTGTGTTTACCAGCACAGCCTCTGAGACGCCATTGTTCTTAAAGGAGCATGTAGAGAA 1237 || | ||||| |||||||| |||||||| ||||||||||| |||||||| ||||||| Sbjct 1013 CGTAATCTTTACTAGCACAGCATCTGAGACACCATTGTTCTTGAAGGAGCACGTAGAGA- 1071 Query 1238 TC-TCCCTCAA-GCTTCTCCAGAGGTTGGAGGACTGAGGCAT-TTTGTTGACATCTCTGT 1294 || |||||| | | || |||| || | | | | ||||| | |||||||| |||||||| Sbjct 1072 TCCTCCCTCCTTG-TCCTGCAGATGTAG-ATG-C-GAGGC-TCTTTGTTGATATCTCTGT 1126 Query 1295 TCCGAGAAATGTTGGATCTTGTGTTGGTGAAGTAGAAACAGCACGGGTTTACAATGTGGA 1354 ||| ||||||||||| |||||||| | |||| |||| | |||||||||||||| ||||| Sbjct 1127 TCCTAGAAATGTTGGCTCTTGTGTAGCTGAATTAGACAGTGCACGGGTTTACAACGTGGA 1186 Query 1355 CGATCTCAAAGAAGTTGTTGCTGCCAACAAAGAAGACAGGATGAGGAAAGCAATGGAAGC 1414 || ||||| ||||||||||||||||| | ||||||||| |||||||||||||||||| Sbjct 1187 TGACCTCAAGGAAGTTGTTGCTGCCAATATGGAAGACAGGGCGAGGAAAGCAATGGAAGC 1246 Query 1415 TCAA-ACCATAATCACAGAGGAATCCACACAGTTTGAAGCATGGAGGGATTC-ATTGGAG 1472 || | ||||| |||||||| || | | ||||||||| ||||||||||| || | | Sbjct 1247 TCGGGAT-ATAATAACAGAGGAGTCAATAAAGTTTGAAGGGTGGAGGGATTCGAT-G-A- 1302 Query 1473 ACGGTTCCAACGATCAAGAAGTTAAGA-GCTTATGCAGAGAGAATCAGAG-TGGCAGA-G 1529 || ||||||| |||||||| |||||| || | |||||| |||||||| || | | | Sbjct 1303 -CGTTTCCAACAATCAAGAAATTAAGAAGCAAAA-CAGAGAAAATCAGAGCTG-CTGCTG 1359 Query 1530 CTCGAGAAGTGCATGTCCAAA-ATGGGAGATGATATCAACAAGAAAACAACGAGA-GCGG 1587 | || || | |||||| ||| |||| | | || || ||||||| || | | || || | Sbjct 1360 TT-GAAAAATTCATGTCGAAATATGGCAAA-GACATGGACAAGAAGACGAGG-GAAGCAG 1416 Query 1588 TTGATGACT-TAAGCCGAG-GTATCGTGAACAG-ATTCTTACATGGTCCAATGCAGCATT 1644 | || || | ||| || || | || |||||||| || || || | |||||| | |||| Sbjct 1417 TAGA-GAATGTAACCCTAGAG-ATAGTGAACAGGATCCTG-CACGACCCAATGAAACATT 1473 Query 1645 TGAGATGTGACGGAAGTGACAGTAGAACGCTG-AGCGAGACCCTTGAGAATATGCATGCT 1703 ||||||| || || | ||| || |||| |||| | ||||| || ||||| ||||| ||| Sbjct 1474 TGAGATGCGATGGGACTGATAGCAGAATGCTGCAT-GAGACTCTAGAGAACATGCAGGCT 1532 Query 1704 TTGAACAGAATGTA 1717 ||||||||||||| Sbjct 1533 GTGAACAGAATGTA 1546 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78351633965 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5