BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58360.1
Length=1740
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925171 jgi|Araly1|925171|scaffold_200732.1 2473 0.0
> Ahg925171 jgi|Araly1|925171|scaffold_200732.1
Length=1502
Score = 2473 bits (1339), Expect = 0.0
Identities = 1448/1501 (96%), Gaps = 6/1501 (0%)
Strand=Plus/Plus
Query 76 tctctttctctcATCACTATGAAGAGTTTCAACACAGAAGGACACAACCACTCCACGGCG 135
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 3 TCTCTTTCTCTCATCACTATGAAGAGTTTCAACACAGAAGAACACAACCCCTCCACGGCG 62
Query 136 GAATCCGGCGATGCCTACACCGTGTCGGACCCGACAAAGAACGTCGATGAAGATGGTCGA 195
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 63 GAATCCGGCGATGCCTACACGGTGTCGGACCCGACAAAGAACGTCGATGAAGACGGTCGA 122
Query 196 GAGAAGCGTACCGGGACGTGGCTTACGGCGAGTGCGCATATTATCACGGCGGTGATAGGC 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 GAGAAGCGTACCGGGACGTGGCTTACGGCGAGTGCGCATATTATCACGGCGGTGATAGGC 182
Query 256 TCCGGAGTGTTGTCTTTAGCATGGGCTATAGCTCAGCTTGGTTGGATCGCAGGGACAT-C 314
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 183 TCCGGAGTGTTGTCTTTAGCATGGGCTATAGCTCAGCTTGGTTGGATCGCAGGGAC-TAC 241
Query 315 GATCTTACTCATTTTCTCGTTCATTACTTACTTCACCTCCACCATGCTTGCCGATTGCTA 374
||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 242 GATTTTGCTCATTTTCTCGTTCATTACTTACTTCACCTCCACCATGCTTGCTGATTGCTA 301
Query 375 CCGTGCGCCGGATCCCGTCACCGGAAAACGGAATTACACTTACATGGACGTTGTTCGATC 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 CCGTGCGCCGGATCCCGTCACCGGAAAACGGAATTACACTTACATGGACGTTGTTCGATC 361
Query 435 TTACCTCGGTGGTAGGAAAGTGCAGCTCTGTGGAGTGGCACAATATGGGAATCTGATTGG 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TTACCTCGGTGGTAGGAAAGTGCAGCTCTGTGGAGTGGCACAATATGGGAATCTGATTGG 421
Query 495 GGTCACTGTTGGTTACACCATCACTGCTTCTATTAGTTTGGTAGCGGTAGGGAAATCGAA 554
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 422 GGTCACTGTTGGTTACACCATCACTGCTTCTATTAGTTTGGTAGCGGTCGGGAAATCGAA 481
Query 555 CTGCTTCCACGATAAAGGGCACACTGCGGATTGTACTATATCGAATTATCCGTATATGGC 614
||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 482 CTGTTTCCACGATAAAGGGCACGGTGCGGATTGTACTATATCGAATTATCCGTATATGGC 541
Query 615 GGTTTTTGGCATTATTCAGGTTATTCTTAGCCAGATCCCAAATTTCCACAAGCTCTCTTT 674
||||||||| || |||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 542 GGTTTTTGGGATCATTCAGGTTATTCTAAGCCAGATCCCGAATTTTCACAAGCTCTCTTT 601
Query 675 TCTTTCCATTATGGCCGCGGTCATGTCCTTTACTTATGCAACTATTGGAATCGGTCTAGC 734
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 602 TCTTTCCATTATGGCCGCGGTCATGTCCTTCACTTATGCAACTATTGGAATTGGTCTAGC 661
Query 735 CATCGCAACCGTCGCAGGTGGGAAAGTGGGTAAGACGAGTATGACGGGCACAGCGGTTGG 794
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 CATTGCGACCGTCGCAGGTGGGAAAGTGGGTAAGACGAGTATGACGGGCACAGCGGTTGG 721
Query 795 AGTAGATGTAACCGCAGCTCAAAAGATATGGAGATCGTTTCAAGCGGTTGGGGACATAGC 854
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 722 AGTTGATGTAACCGCAGCTCAGAAGATATGGAGATCGTTTCAAGCGGTTGGGGACATAGC 781
Query 855 GTTCGCCTATGCTTATGCCACGGTTCTCATCGAGATTCAGGATACACTAAGATCTAGCCC 914
||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 782 GTTCGCCTATGCTTACGCCACGGTTCTCATTGAGATTCAGGATACACTGAGATCTAGCCC 841
Query 915 AGCTGAGAACAAAGCCATGAAAAGAGCAAGTCTTGTGGGAGTATCAACCACCACTTTTTT 974
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 842 AGCTGAGAACAAAGCCATGAAAAGAGCAAGTCTTGTTGGAGTATCAACCACCACATTTTT 901
Query 975 CTACATCTTATGTGGATGCATCGGCTATGCTGCATTTGGAAACAATGCCCCTGGAGATTT 1034
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 902 CTACATCTTATGTGGATGCATCGGCTATGCTGCATTTGGAAACAAAGCCCCTGGAGACTT 961
Query 1035 CCTCACAGATTTCGGGTTTTTCGAGCCCTTTTGGCTCATTGACTTTGCAAACGCTTGCAT 1094
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 962 CCTCACGGATTTCGGGTTTTTCGAGCCCTTTTGGCTCATTGACTTTGCAAATGCTTGCAT 1021
Query 1095 CGCTGTCCACCTTATTGGTGCCTATCAGGTGTTCGCGCAGCCGATATTCCAGTTTGTTGA 1154
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1022 TGCTGTCCACCTTATTGGTGCCTATCAGGTGTTCGCGCAGCCGATTTTCCAGTTTGTTGA 1081
Query 1155 GAAAAAATGCAACAGAAACTATCCAGACAACAAGTTCATCACTTCTGAATATTCAGTAAA 1214
|||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1082 GAAAAAATGCAATAGAAACTATCCAGACAACAAGTTCATCACTTCCGAATATCCAGTAAA 1141
Query 1215 CGTACCTTTCCTTGGAAAATTCAACATTAGCCTCTTCAGATTGGTGTGGAGGACAGCTTA 1274
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1142 CGTACCTTTCCTTGGAAAATTCAACATTAGCCTCTTCAGATTGGTGTGGAGGTCAGCTTA 1201
Query 1275 TGTGGTTATAACCACTGTTGTAGCTATGATATTCCCTTTCTTCAACGCGATCTTAGGTCT 1334
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1202 TGTGGTTATAACCACTGTTGTAGCTATGATATTCCCTTTCTTCAACGCGATCTTGGGTCT 1261
Query 1335 TATCGGAGCAGCTTCCTTCTGGCCTTTAACGGTTTATTTCCCTGTGGAGATGCACATTGC 1394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 TATCGGAGCAGCTTCCTTCTGGCCTTTAACGGTTTATTTCCCTGTGGAGATGCACATTGC 1321
Query 1395 ACAAACCAAGATTAAGAAGTACTCTGCTAGATGGATTGCGCTGAAAACGATGTGCTATGT 1454
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1322 ACAAACCAAGATTAAGAAGTACTCTGCTAGATGGATTGCGCTGAAAATGATGTGCTATGT 1381
Query 1455 TTGCTTGATCGTCTCGCTCTTAGCTGCAGCCGGATCCATCGCAGGACTTATAAGTAGTGT 1514
||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||
Sbjct 1382 TTGCTTGATCGTCTCGCTCTTAGCTGCGGCTGGATCCATCGCGGGACTGATAAGTAGTGT 1441
Query 1515 CAAAACCTACAAGCCCTTCCGGACTATGC-ATGAGTGAGTTTGAGATCC-TCAAGAGAGT 1572
||| || ||||||||||||||||||| || |||| |||||||||||||| | | ||||||
Sbjct 1442 CAAGACATACAAGCCCTTCCGGACTA-GCCATGAATGAGTTTGAGATCCATGA-GAGAGT 1499
Query 1573 C 1573
|
Sbjct 1500 C 1500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65286679930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5