BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59700.1
Length=1064
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907524 jgi|Araly1|907524|Al_scaffold_0002_605 767 0.0
Ahg907518 jgi|Araly1|907518|Al_scaffold_0002_599 584 4e-166
Ahg914561 jgi|Araly1|914561|Al_scaffold_0001_4815 104 1e-21
> Ahg907524 jgi|Araly1|907524|Al_scaffold_0002_605
Length=699
Score = 767 bits (415), Expect = 0.0
Identities = 603/694 (87%), Gaps = 12/694 (2%)
Strand=Plus/Plus
Query 164 ATGGGAGAGAAAGAGGAAGTGAAACTATTAGGAGTATGGTACAGTCC-ATACGCCATAAG 222
||||||||| |||||||||||||||| || ||| |||||||||||| | || ||||
Sbjct 1 ATGGGAGAGGAAGAGGAAGTGAAACTGTTGGGAACATGGTACAGTCCGGT-CGTGTTAAG 59
Query 223 ACCTAAGATCGCTCTTCGTCTCAAATCAGTGGATTATGATTACGTTGAGGAAAATCTGTT 282
| | ||||| ||||||||||||||||| || ||||||||||||||||| ||| || ||||
Sbjct 60 AGCAAAGATAGCTCTTCGTCTCAAATCGGTTGATTATGATTACGTTGAAGAAGATTTGTT 119
Query 283 TGGATCCAAGAGTGAGCTTCTTCTCAAATCAAACCCGGTTCACAAGAAAGTCCCTGTTCT 342
||||| ||||||||||||||||||||||| ||||||||| ||||||||||||| |||||
Sbjct 120 CGGATCAAAGAGTGAGCTTCTTCTCAAATCGAACCCGGTTTACAAGAAAGTCCCGGTTCT 179
Query 343 CCTCCACAACAACAAACC-GATTGTCGAGTCTCTCAACATCGTTGAATACATTGATGAGA 401
| ||||||||| ||||| | ||| ||||||||| |||||||| || ||||| |||||||
Sbjct 180 CATCCACAACAGTAAACCGGTTTG-CGAGTCTCTTAACATCGTAGAGTACATCGATGAGA 238
Query 402 CGTGGAACTCATCTGCACCGTCCATTCTTCCTTCACATCCTTATGATCGTGCTCTTGCTC 461
||||||||||||||| |||||||||||||||||| |||||| ||||||| ||||||||||
Sbjct 239 CGTGGAACTCATCTGGACCGTCCATTCTTCCTTCTCATCCTCATGATCGAGCTCTTGCTC 298
Query 462 GCTTTTGGTCTGACTTCGTTGATAACAAGTGGTTTCCGGCGTTGAGAATGGC-G--GCGA 518
|||| ||||||| |||||||||| |||||||||||||||| || | ||||| | | |
Sbjct 299 GCTTCTGGTCTGCCTTCGTTGATGACAAGTGGTTTCCGGC-TT-TG-ATGGCAGCAGTGG 355
Query 519 TCACTAAATCGGAAGACGCAAAAGCGAAAGCCATGGAAGAAGTGGAAGAAGGGTTGTTGC 578
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 356 TCACTAAATCGGAAGACGCAAAAGCAAAAGGCATGGAAGAAGTGGAAGAAGGGTTGTTGC 415
Query 579 AACTCGAGGATGCGTTTGTTTCTATAAGCAAAGGGAAACCCTTTTTCGGCGGTGAAGCAA 638
||||||||||||||||| ||||| |||||||||||||| | ||||||||||||||| |||
Sbjct 416 AACTCGAGGATGCGTTTATTTCTCTAAGCAAAGGGAAATCTTTTTTCGGCGGTGAAACAA 475
Query 639 TCGGGTTTATGGATATTTG-CTTTGGAAGCTTTGTGGTTCTCTTGAAAGCTAGAGAAAAG 697
||||||| ||||| ||||| || ||||||||| | ||| |||| |||||||||||||||
Sbjct 476 TCGGGTTCATGGACATTTGTCTC-GGAAGCTTTTTAGTTTTCTTTAAAGCTAGAGAAAAG 534
Query 698 TTTAAAGCAGAAAAGCTTTTAGACGAATCAAAAACTCCTTCTCTTTGTAAATGGGCCGAC 757
||||| ||||||| |||||||||||| ||||||||||||||||| || |||||| ||
Sbjct 535 CTTAAAAAAGAAAAGATTTTAGACGAATTAAAAACTCCTTCTCTTTATAGATGGGCTAAC 594
Query 758 CGGTTCTTGTCCGATGAAACGGTGAAGAATGTGGCACCGGAGATCGAAAAAGTAGCTGAG 817
| ||| ||||| ||||||||||||| |||||||| |||||||| || | ||| || ||
Sbjct 595 CAGTTTTTGTCAGATGAAACGGTGATGAATGTGGTGCCGGAGATAGATAGAGTTGCCAAG 654
Query 818 TTTCTACAAGAACTTGAGGTTAGAGCTCAATCCG 851
||| || ||||||||||| ||||||||||||||
Sbjct 655 TTTATAGTAGAACTTGAGGATAGAGCTCAATCCG 688
> Ahg907518 jgi|Araly1|907518|Al_scaffold_0002_599
Length=579
Score = 584 bits (316), Expect = 4e-166
Identities = 356/376 (95%), Gaps = 0/376 (0%)
Strand=Plus/Plus
Query 491 TGGTTTCCGGCGTTGAGAATGGCGGCGATCACTAAATCGGAAGACGCAAAAGCGAAAGCC 550
||||||||||| |||||| |||| |||||||| ||||| |||||| ||||||||||||||
Sbjct 202 TGGTTTCCGGCTTTGAGAGTGGCTGCGATCACCAAATCAGAAGACACAAAAGCGAAAGCC 261
Query 551 ATGGAAGAAGTGGAAGAAGGGTTGTTGCAACTCGAGGATGCGTTTGTTTCTATAAGCAAA 610
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 262 ATGGAAGAAGTGGAAGAAGGATTGTTGCAACTCGAGGATGCATTTGTTTCTATAAGCAAA 321
Query 611 GGGAAACCCTTTTTCGGCGGTGAAGCAATCGGGTTTATGGATATTTGCTTTGGAAGCTTT 670
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 322 GGGAAACCCTTTTTTGGCGGTGAAGCAATCGGGTTTATGGACATTTGCTTTGGAAGCTTG 381
Query 671 GTGGTTCTCTTGAAAGCTAGAGAAAAGTTTAAAGCAGAAAAGCTTTTAGACGAATCAAAA 730
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 382 GTGGTTCTCTTGAAGGCTAGAGAGAAGTTTAAAGCAGAAAAGCTTTTAGACGAATCAAAA 441
Query 731 ACTCCTTCTCTTTGTAAATGGGCCGACCGGTTCTTGTCCGATGAAACGGTGAAGAATGTG 790
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 442 ACTCCTTCTCTTTGTAAATGGGCCGACCGGTTCTTATCCGATGAAACAGTGAAGAATGTG 501
Query 791 GCACCGGAGATCGAAAAAGTAGCTGAGTTTCTACAAGAACTTGAGGTTAGAGCTCAATCC 850
| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 502 GTGCCGGAGATCGATAAAGTAGCTGAGTTTCTGCAAGAACTTGAGGTTAGAGCTCAATCA 561
Query 851 GCAGCTTCAAGATCTT 866
||||||||||||||||
Sbjct 562 GCAGCTTCAAGATCTT 577
Score = 215 bits (116), Expect = 6e-55
Identities = 146/160 (91%), Gaps = 4/160 (3%)
Strand=Plus/Plus
Query 164 ATGGGAGAGAAAGAGGAAGTGAAACTATTAGGAGTATGGTACAGTCCATACGCCATAAGA 223
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAGAGAGAGAGGAAGTGAAACTATTGGGAGTATGGTACAGTCCATACGCCATAAGA 60
Query 224 CCTAAGATCGCTCTTCGTCTCAAATCAGTGGATTATGATTACGTTGAGGAAAATCTGTTT 283
|| |||||||||||||||||||||||| | ||||||||||||||||| ||| || |||||
Sbjct 61 CCAAAGATCGCTCTTCGTCTCAAATCAATCGATTATGATTACGTTGAAGAAGATTTGTTT 120
Query 284 GGATCCAAGAGTGAGCT---T-CTTCTCAAATCAAACCCG 319
||||| ||||||||||| | ||||||||||| ||||||
Sbjct 121 GGATCAAAGAGTGAGCTAGCTTCTTCTCAAATCGAACCCG 160
> Ahg914561 jgi|Araly1|914561|Al_scaffold_0001_4815
Length=675
Score = 104 bits (56), Expect = 1e-21
Identities = 115/142 (81%), Gaps = 9/142 (6%)
Strand=Plus/Plus
Query 269 GAGGAAAATCTGTTTGGATCCAAGAGTGAGCTTCTT-CTCAAATCAAACCCGGTTCACAA 327
|||||| ||||| |||| ||||||||||| | || | ||||||||||||||||||||
Sbjct 109 GAGGAAGATCTG--TGGA-ACAAGAGTGAGC-TGTTGTTGAAATCAAACCCGGTTCACAA 164
Query 328 GAAAGTCCCTGTTCTCCTCCACAACAACAAACCGAT-TGTCGAGTCTCTCAAC-ATCGTT 385
||||||||||||||| |||||||||||| ||| || | | || || |||| | | |||
Sbjct 165 GAAAGTCCCTGTTCTTATCCACAACAACACACCAATCTCT-GAATCACTCATCCAG-GTT 222
Query 386 GAATACATTGATGAGACGTGGA 407
| ||||| || ||||||||||
Sbjct 223 CAGTACATCGACGAGACGTGGA 244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39609710763
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5