BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59730.1
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475341 jgi|Araly1|475341|fgenesh2_kg.2__471__AT1G59730.1 802 0.0
> Ahg475341 jgi|Araly1|475341|fgenesh2_kg.2__471__AT1G59730.1
Length=532
Score = 802 bits (434), Expect = 0.0
Identities = 505/538 (94%), Gaps = 9/538 (2%)
Strand=Plus/Plus
Query 13 CACTAGCAAATAAGTGAACACCATTTCTTCATACATACACATTCCGAAGATAATGGGTTC 72
||||||||||||| |||| | ||||||| |||||| |||||||| ||||| |||||||||
Sbjct 1 CACTAGCAAATAAATGAATATCATTTCTCCATACAGACACATTCGGAAGACAATGGGTTC 60
Query 73 CAATGTTTCATCTGTGCATGATGTTCATTCATCAATGGAAATTACCAGTAATGGATTTGT 132
|||||||||||||||||||||||||||||||||||||| || |||| |||||||| ||
Sbjct 61 CAATGTTTCATCTGTGCATGATGTTCATTCATCAATGG-AA--ACCAACAATGGATTGGT 117
Query 133 TGTGGAAATCGAATCAAGAAGACAATGGAAATCTCTCTTTGATTCCATGAAAGGCTCAAA 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TGTGGAAATCGAATCAAGAAGACAATGGAAATCTCTCTTTGATTCCATGAAAGGCTCAAA 177
Query 193 CAAATTGCTAGTAATTGATTTCACAGCTGTATGGTGTGGACCTTGTAAAGCAATGGAACC 252
||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||
Sbjct 178 CAAATTGCTAGTAATTGATTTTACAGCTGCATGGTGTGGGCCTTGTAAAGCAATGGAACC 237
Query 253 TAGAGTTAGGGAGATTGCTTCAAAGTACTCAGAAGCTGTGTTTGCTAGGGTTGATGTGGA 312
|||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 238 TAGAGTTAAGGAGATTGCTTCAAAGTACCCAGAAGCTGTGTTTTCTAGGGTTGATGTGGA 297
Query 313 TAGGCTAATGGATGTGGCTGGGACATATAGAGCTATTACACTTCCAGCTTTTGTTTTTGT 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TAGGCTAATGGATGTGGCTGGGACATATAGAGCTATTACACTTCCAGCTTTTGTTTTTGT 357
Query 373 GAAGAGAGGAGAAGAGATTGATAGGGTTGTTGGAGCCAAACCTGATGAGCTCGTGAAGAA 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GAAGAGAGGAGAAGAGATTGATAGGGTTGTTGGAGCCAAACCTGATGAGCTCGTGAAGAA 417
Query 433 GATTGAACAACATAGGGTTTAAGTTTTTTCTTTTCCC-TTACaaaa-aaaTGATTATTAT 490
||||||| ||||||||||||||| ||| | ||||||| |||||||| ||| |||||| |
Sbjct 418 GATTGAAAAACATAGGGTTTAAGATTTGT-TTTTCCCCTTACAAAACAAAAGATTAT-A- 474
Query 491 ACTTTTGAATGTCTGTTCTGAATTGATTGTTTGAAGTTGGGTTTCTGGTTTGTTGTTT 548
||||||||||| |||| ||||||||||||||||||||| |||| |||||||||||||
Sbjct 475 -CTTTTGAATGTGTGTTGTGAATTGATTGTTTGAAGTTGAGTTTTTGGTTTGTTGTTT 531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21176351895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5