BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G59780.1 Length=2721 Score E Sequences producing significant alignments: (Bits) Value Ahg907505 jgi|Araly1|907505|Al_scaffold_0002_586 3097 0.0 Ahg891414 jgi|Araly1|891414|Al_scaffold_0007_3400 1441 0.0 Ahg475351 jgi|Araly1|475351|fgenesh2_kg.2__481__AT1G59620.1 207 3e-52 Ahg907496 jgi|Araly1|907496|Al_scaffold_0002_577 204 3e-51 Ahg914885 jgi|Araly1|914885|Al_scaffold_0001_5139 180 6e-44 Ahg907562 jgi|Araly1|907562|Al_scaffold_0002_643 154 3e-36 > Ahg907505 jgi|Araly1|907505|Al_scaffold_0002_586 Length=2703 Score = 3097 bits (1677), Expect = 0.0 Identities = 2392/2728 (88%), Gaps = 85/2728 (3%) Strand=Plus/Plus Query 16 ATGGTTGATTCAATTGTATCGTTCGGTGTTGAAAAGCTTTGGAAACTCCTGAGCCAAGAA 75 |||| ||| ||||||||||||||||||||| |||||| ||| ||||| ||||| |||| Sbjct 1 ATGGCTGACGCAATTGTATCGTTCGGTGTTGGAAAGCTCTGGGAACTCGTGAGCGAAGAT 60 Query 76 TATGAGCGATTCCAGGGAGTTGAAGAGCAAATTACGGAGCT-AAGAGATGATCTGAAGAT 134 ||| ||||||| | ||||||||||||||||||||| |||| ||||| |||||||||||| Sbjct 61 TATCAGCGATTTCGGGGAGTTGAAGAGCAAATTACTCAGCTAAAGAG-TGATCTGAAGAT 119 Query 135 GTTAATGGCCTTTCT-ATCTGATGCAGATGCAAAGAAACAAAC-CCGTGCACTTGCAAGA 192 ||||||| ||||||| | ||| || ||||||| ||||||||| | ||||||||||||| Sbjct 120 GTTAATGTCCTTTCTGA-GTGACGCGGATGCAAGGAAACAAACAAC-TGCACTTGCAAGA 177 Query 193 AACTGCCTTGAAGA-GATAAAGGAAATCACTTATGATGCTGAGGATATAATAG-AA-ATC 249 |||||| | || || | |||||||||||||||| ||||| |||||||||| | || || Sbjct 178 AACTGCGTAGACGACG-TAAAGGAAATCACTTACGATGCCCAGGATATAATTGAAACATA 236 Query 250 T-TTCT---TC--TAA--AA--G---GCAGT-G--TC-----A-ACATGAGAAGCCTTGC 287 | |||| | || || | | ||| | || | |||||||||| ||||| Sbjct 237 TCTTCTAAAGCGAGAACGAAGTGAAAGTAGTGGCATCAAGAAACACATGAGAAGTCTTGC 296 Query 288 TTGCTTTCCAGGTGGTCGTAGGGAGATTGCCTT-GCAAATCACAAGCATCAGTAAGAGGA 346 |||| ||| | ||||||||||| ||| |||||| | ||||||||||||| |||||||| | Sbjct 297 TTGCATTCAAAGTGGTCGTAGGAAGACTGCCTTAG-AAATCACAAGCATTAGTAAGAGAA 355 Query 347 TCTCCAAGGTTATCCAAGTTATGCAGA-ATTTAGGCATAAAATCAG-ACATTATGGACGG 404 ||||||| || ||||| ||||||| || |||| || ||| |||| | ||||||| || || Sbjct 356 TCTCCAAAGTGATCCAGGTTATGC-GAGATTTTGGGATACAATC-GAACATTATTGAAGG 413 Query 405 TGTGG-ATTCGCATGCTCAAC-TGGAAAGGAAAAGGGAGTTGCGTCATACATTTTCTAGT 462 || || ||||||| |||| || | || || |||||||| |||||||||||||||| | | Sbjct 414 TG-GGTATTCGCAGGCTCTACAT-GATAGAAAAAGGGAAATGCGTCATACATTTTCCAAT 471 Query 463 GAATCTGAGAGCAATCTTGTTGGTTTGGAGAAAAATGTTGAGAAATTGGTTGAA-GAATT 521 || ||||| |||||||||||||||||||||||||||||||||| ||||||| || ||||| Sbjct 472 GAGTCTGAAAGCAATCTTGTTGGTTTGGAGAAAAATGTTGAGAGATTGGTT-AAGGAATT 530 Query 522 GGTGGG-AA--ACGATAGCAGTCATGGGGTATCTATTACTGGTTTGGGTGGTCTTGGCAA 578 |||||| || | ||||||||||| ||||||||||| ||||| ||||||||||||||||| Sbjct 531 GGTGGGAAATGATGATAGCAGTCACGGGGTATCTATAACTGGCTTGGGTGGTCTTGGCAA 590 Query 579 AACCACCCTTGCACGGCAAATTTTTGATCATGATA-AGGTAAAAAGTCATTTTGATGGAC 637 |||||||||||| |||||| ||||| ||||||||| | |||||| ||||||||||||||| Sbjct 591 AACCACCCTTGCCCGGCAAGTTTTTAATCATGATACA-GTAAAACGTCATTTTGATGGAC 649 Query 638 TTGCGTGGGTGTGTGTATCACAAGAGTTTACACGGAAAGATGTGTGGAAAACCATCTTG- 696 ||| ||||||||||||||| ||||||||||||||||| ||||||||| | ||||||||| Sbjct 650 TTGTGTGGGTGTGTGTATCGCAAGAGTTTACACGGAAGGATGTGTGGCAGACCATCTTGA 709 Query 697 GGGAATCTTAGTCCTAAATATAAAGACTCAGACTTGCCGGAAGACGATATTCAGAAGAAA 756 ||| ||||||||||| | ||||||| ||| |||||| |||||||||||||||||||||| Sbjct 710 GGG-ATCTTAGTCCTGGAGATAAAGATTCAAACTTGCGGGAAGACGATATTCAGAAGAAA 768 Query 757 CTCTTTCAGTTGTTGGAAACaaaaaaaGCTTTGATCGTCTTTGATGACCTATGGAAAAGA 816 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 769 CTCGTTCAGTTGTTGGAAACAAAAAAAGCTTTGATCGTCTTTGATGACCTATGGAAAAAA 828 Query 817 GAGGACTGGTACAGAATAGCGCCCATGTTTCCAGAGAGAAAAGCTGGTTGGAAGGTACTA 876 || |||||| |||||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 829 GAAGACTGGGACAGAATAAAGCCAATGTTTCCAGAGAGAAAAGCTGGTTGGAAGGTACTA 888 Query 877 CTTACTTCACGCAACGATGCAATACATCCACATTGTGTGACTTTCAAACCAGAACTCTTA 936 ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| || Sbjct 889 CTTACTTCACGCAACGACGCAATACATCCACATTGTGTGACCTTCAAACCAGAACTCCTA 948 Query 937 ACTCATGACGAATGTTGGAAACTTTTACAAAGGATAGCATTTTCTAAGCAAAAAACAATA 996 ||||||||||||||||||||||||||||||| |||||||||| ||||| || | | | Sbjct 949 ACTCATGACGAATGTTGGAAACTTTTACAAATGATAGCATTTCCTAAG--AACGTC-ACA 1005 Query 997 ACTGGATATATAATTGATAAAGAAATGGTAAAGATGGCTAAGGAGATGA-CAAAACATTG 1055 ||||||||||||||||||||||| |||||| ||||||||||| |||||| | |||||||| Sbjct 1006 ACTGGATATATAATTGATAAAGATATGGTAGAGATGGCTAAGCAGATGATC-AAACATTG 1064 Query 1056 TAAAAGACTACCATTGGCTGTCAAACTGTTAGGCGGGTTATTAGATGCCAAACACACATT 1115 | | |||||||||||||||||||| ||||||| ||||| |||| |||| |||||||| Sbjct 1065 TGGAGGACTACCATTGGCTGTCAAAGTGTTAGGAGGGTTGTTAGCTGCCCAACACACACC 1124 Query 1116 GCGTCAGTGGAAACTGATATCTGAGAATATTATATCTCACATAGTTGTTGGAGGGACTAG 1175 |||||||||||| |||||||||||||||||| |||||||||||||| || |||| ||| Sbjct 1125 ACGTCAGTGGAAAATGATATCTGAGAATATTAAATCTCACATAGTTGGAGGTGGGATTAG 1184 Query 1176 TTCCAATGAAAACGATAGCAGTTCGGTTAACCATGTTCTGTCTTTGAGCTTTGAAGGATT 1235 ||||||||| |||||||||||||| | || ||||||||||||||||||||||||||||| Sbjct 1185 TTCCAATGATGACGATAGCAGTTCGATCAATCATGTTCTGTCTTTGAGCTTTGAAGGATT 1244 Query 1236 GCCTGGTTATTTGAAGCACTGCTTACTCTACCTAGCCTCTTATCCCGAAGATCATGAAAT 1295 |||| |||||||||||||||||||||||||||||||||||| ||| ||||||| | |||| Sbjct 1245 GCCTAGTTATTTGAAGCACTGCTTACTCTACCTAGCCTCTTTTCCAGAAGATCGTCAAAT 1304 Query 1296 CGAAATAGAGAGATTGTCTTATGTCTGGGCTGCAGAAGGAATAACATATCCTGGGAATTA 1355 ||| |||||||||||||||||||||||||||||||||| |||||| ||||| || |||| Sbjct 1305 AGAATTAGAGAGATTGTCTTATGTCTGGGCTGCAGAAGGTATAACAAATCCTAGGCATTA 1364 Query 1356 CGAGGGAGCTACCATTCGAGATGTTGCGGATCTCTACATAGAAGAGTTAGTGAAGAGAAA 1415 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1365 CGAGGGAGCTTCCATTCGAGATGTTGCGGATCTCTACATAGAAGAGTTAGTGAAGAGAAA 1424 Query 1416 TATGGTTATTTC-CGAAAGAGACGCGTTGACTTCGAGATTTGAAAAATGTCAGTTGCATG 1474 | |||||||||| | |||||||| | ||||||||||||||||| ||||||||||||| Sbjct 1425 TCTGGTTATTTCTC-AAAGAGACTTGGCGACTTCGAGATTTGAAATTTGTCAGTTGCATG 1483 Query 1475 ACTTGATGAGGGAGATTTGTTTGTTAAAAGCCAAGGAAGAGAACTTTTTACAGATTGTTA 1534 |||||||||| ||||||||||||||||||||||||||||||| |||| || ||||||||| Sbjct 1484 ACTTGATGAGAGAGATTTGTTTGTTAAAAGCCAAGGAAGAGAGCTTTGTAAAGATTGTTA 1543 Query 1535 CTGATCCAACCAGCAGCTCAAGCGTACACTCTCTAGCTTCTAGCAGATCACGTAGACTCG 1594 ||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 1544 GTGATCCAGCCAGCAGCTCAAGCGTACACTCTCAAGCTTCTAGCAAATCACGTAGACTCG 1603 Query 1595 TAGTGTACAACACCAGTATTTTTAGTGGAGAGAACGATATGAAGAATTCCAAACTTAGAT 1654 | |||||| |||| ||| |||||||||||||| || |||||||||||||||||||||| Sbjct 1604 TTGTGTACGGCACCCGTACTTTTAGTGGAGAGAGGGAGATGAAGAATTCCAAACTTAGAT 1663 Query 1655 CTCTCTTGTTTATTCCAGTTGGGTATAG-TAGGTTT-TCGATGGGATCAAACTTCATAGA 1712 |||||||||||||||||||||||||| | | ||||| | |||| ||||||||||||| || Sbjct 1664 CTCTCTTGTTTATTCCAGTTGGGTAT-GATTGGTTTAT-GATGAGATCAAACTTCATGGA 1721 Query 1713 GTTACCATTGTTGAGGGTTTTAGATCTC-GATGGAGCTAAATTTAAAGGAGGGAAGTTAC 1771 |||||||||||||||||||||||||||| ||||| ||||||||| | ||||||||||||| Sbjct 1722 GTTACCATTGTTGAGGGTTTTAGATCTCAGATGG-GCTAAATTTGAGGGAGGGAAGTTAC 1780 Query 1772 CCTCTAGCATTGGAAAGCTCATCCACTTGAAGTATTTGAGTTTATATCAGGCATCTGTAA 1831 ||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| Sbjct 1781 CCTCTAGCATTGGAAAGCTCATCCACTTGAAGTATTTGAGTTTATATGACGCAAAGGTAA 1840 Query 1832 CTTATTTACCTTCATCTTTGCGGAACCTGAAGTCGCTGCTCTATCTCAATCTACGTATAA 1891 || || |||||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 1841 CTCATCTACCTTCATCTTTGCGGAACCTGAAGTCGCTGCTCTATCTTAATCTAAATATAC 1900 Query 1892 ATTCTGGTCAGCTGATTAACGTGCCCAATGTCTTTAAAGAGATGCTAGAACTGAGATACC 1951 ||| ||| |||| | |||||||||||||||||||||||||||||||||||||||| | Sbjct 1901 GTTC---TCATCTGAATGACGTGCCCAATGTCTTTAAAGAGATGCTAGAACTGAGATATC 1957 Query 1952 TCAGCTTACCATGGGA-AAGAAGTAGTTTGACAAAGTTGGAACTGGGTAATCTACTCAAA 2010 || ||||||||| ||| | || |||| ||||||||||||| ||||||||||||||||| Sbjct 1958 TCTGCTTACCAT-GGAGTACAACTAGTAGGACAAAGTTGGAATTGGGTAATCTACTCAAA 2016 Query 2011 TTGGAGACGTTGATA-AATTTCTCAACAAAGGATAGCAGTGTGACAGATCTTCACCGTAT 2069 ||||||||||||| | ||||||||||| || |||||| || ||| |||||||||||||| Sbjct 2017 TTGGAGACGTTGA-AGTATTTCTCAACAGAGAATAGCAATGCGACGGATCTTCACCGTAT 2075 Query 2070 GACAAAGCTAAGGACCCTCCAAATCTTAATCAGTGGCGAGGGGTTGCATATGGAAACTCT 2129 ||||| |||||||| ||| | |||||||||||||||||||||| || |||||||||||| Sbjct 2076 GACAAGGCTAAGGAGTCTCGATATCTTAATCAGTGGCGAGGGGTGGCGTATGGAAACTCT 2135 Query 2130 GTCTTCAGCTCTAAGTATGTTGGGACACTTGGAAGATCTTACAGTA-AC-ACCTTCCGAG 2187 |||||| ||||||||| ||||||||||||||||||||||| || || | || ||||| Sbjct 2136 ATCTTCAACTCTAAGTAAATTGGGACACTTGGAAGATCTTAC--TATACGATCTCCCGAG 2193 Query 2188 AATTCCGTTCAGT-TCAAGCACCCGAAGTTGATATATAGGCCGATGTTACCTGATGTGCA 2246 ||||||||||| | |||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 2194 AATTCCGTTCA-TCTCAAACACCCTAAGTTGATATATAGGCCGATGTTACCTGATGTGCA 2252 Query 2247 ACATTTTCCTTCTCATCTTACAACCATATCTCTAGTATATTGTTTTTTGGAGGAGGATCC 2306 ||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| Sbjct 2253 ACATTTTCCTTCTCATCTTACAACCATATCTCTAGAAGATTGTCGTTTGGAGGAGGATCC 2312 Query 2307 GATGCCAACTCTAGAGAAACTGCTACAACTGAAAGTGGTTTCTTTATGGTACAACGCCTA 2366 |||||||| | ||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 2313 GATGCCAATTTTAGAGAAACTGCTACAACTGAAAGTGGTTTCTTTATGGTGGAACGCTTA 2372 Query 2367 TGTTGGGAGGAGAA-TGGTTTGCACCGGCGGTGGGTTTCCTCCATTGCACAGGCTTGAAA 2425 |||||||||| ||| |||||||| || ||||||||||||||| ||||| | ||| || Sbjct 2373 TGTTGGGAGG-GAAATGGTTTGCTCCAGCGGTGGGTTTCCTCAATTGCTGAAGCTCGATT 2431 Query 2426 TATGGGGACTAGATGCCTTGGAAGAGTGGATAGTAGAAGAAGGCTCCATGCCCCTTCTTC 2485 | || |||||||||| | ||||||||||| ||||||||||||||||||||||||||||| Sbjct 2432 TGTGTGGACTAGATGAATGGGAAGAGTGGAAAGTAGAAGAAGGCTCCATGCCCCTTCTTC 2491 Query 2486 ATACTCTGCAT-ATTG-TAGACTGTAAGAAAT-TAAAGGAGATTCCAGATGGGCTGCGAT 2542 || |||| ||| ||| | | ||| | || |||||||| |||||||||||||| ||| Sbjct 2492 ATTCTCT-CATTATTCATTGG-TGTC-GTAAGCTAAAGGAGCTTCCAGATGGGCTGAGAT 2548 Query 2543 TTATCAGTTCATTAAAGGAATTGGCTATCCGCACAAATGAAAAAGTATTTCAGAAGAAGG 2602 |||||| ||||||| ||||||||| |||| |||||| |||| || ||||||||||| || Sbjct 2549 TTATCACTTCATTACAGGAATTGGGTATCTACACAAAGGAAAGAGAATTTCAGAAGAGGG 2608 Query 2603 TATCCAAAGGAGGAGAAGATTACTATAAAATGCAACACGTCCCTCTTATTCGATATAACT 2662 | ||||||||||||||||||||||||||||| |||||| | ||||||||||||||| ||| Sbjct 2609 TTTCCAAAGGAGGAGAAGATTACTATAAAATCCAACACATTCCTCTTATTCGATATGACT 2668 Query 2663 GGCCACAAGAACCAGAAAACAACGAGGT 2690 |||||||| |||||||| |||||||||| Sbjct 2669 GGCCACAAAAACCAGAAGACAACGAGGT 2696 > Ahg891414 jgi|Araly1|891414|Al_scaffold_0007_3400 Length=1821 Score = 1441 bits (780), Expect = 0.0 Identities = 1264/1484 (85%), Gaps = 87/1484 (6%) Strand=Plus/Plus Query 1036 AAGGAGATGACAAAACATTGTAAAAGACTACCATTGGCTGTCAAACTGTTAGGCGGGTTA 1095 |||||||||| ||||||||| | |||||||||||||||||||| ||||||| ||||| Sbjct 199 AAGGAGATGATTAAACATTGTGGAGGACTACCATTGGCTGTCAAAGTGTTAGGAGGGTTG 258 Query 1096 TTAGATGCCAAACACACATTGCGTCAGTGGAAACTGATATCTGAGAATATTATATCTCAC 1155 |||| ||| |||||||||| ||||||||||||| |||||||||||||||||| | ||||| Sbjct 259 TTAGCTGCAAAACACACATCGCGTCAGTGGAAAATGATATCTGAGAATATTAAAGCTCAC 318 Query 1156 ATAGTTGTTGGAG-GGACTAGTTCCAATGAAAACGATAGCAGTTCGGTTAACCATGTTCT 1214 ||||||| || | ||| |||||||||||| ||||||||||| ||||||| |||||| | Sbjct 319 ATAGTTGAAGG-GCGGATTAGTTCCAATGATGACGATAGCAGTACGGTTAATCATGTTTT 377 Query 1215 GTCTTTGAGCTTTGAAGGATTGCCTGGTTATTTGAAGCACTGCTTACTCTACCTAGCCTC 1274 ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 378 GTCTTTGAGCTATGAAGGATTGCCTAGTTATTTGAAGCACTGCTTACTCTACCTAGCCTC 437 Query 1275 TTATCCCGAAGATCATGAAATCGAAATAGAGAGATTGTCTTATGTCTGGGCTGCAGAAGG 1334 |||||| ||||||||| |||| ||||||| ||||||||||||||||||||||||||||| Sbjct 438 TTATCCAGAAGATCATAAAATAAAAATAGACAGATTGTCTTATGTCTGGGCTGCAGAAGG 497 Query 1335 AATAACATATCCTGGGAATTACGAGGGAGCTACCATTCGAGATGTTGCGGATCTCTACAT 1394 ||||||| ||||| || ||||||| |||||| |||||||| || |||||||||| |||| Sbjct 498 AATAACAAATCCTAGGCATTACGATGGAGCTTCCATTCGACATAATGCGGATCTCAACAT 557 Query 1395 AGAAGAGTTAGTGAAGAGAAATATGGTTATTTCCGAAAGAGACGCGTTGACTTCGAGATT 1454 | ||||||||||||||||||||||||||||||| |||||||||| ||| | ||||||||| Sbjct 558 AAAAGAGTTAGTGAAGAGAAATATGGTTATTTCTGAAAGAGACGTGTTTATTTCGAGATT 617 Query 1455 TGAAAAATGTCAGTTGCATGACTTGATGAGGGAGATTTGTTTGTTAAAAGCCAAGGAAGA 1514 |||| | ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 618 TGAATATTGTCAGTTGCATGACTTGATGAGAGAGATTTGTTTGTTAAAAGGCAAGGAAGA 677 Query 1515 GAACTTTTTACAGATTGTTACTGATCCAACCAGCAGCTCAAGCGTACACTCTCTAGCTTC 1574 || |||| || ||||||||| ||||||| ||||||| ||| |||| |||| | || Sbjct 678 GAGCTTTATAAAGATTGTTAGTGATCCAGCCAGCAGATCA--CGTAGACTC----G-TT- 729 Query 1575 TAGCAGATCACGTAGACTCGTAGTGTACA-ACACCAGTATTTTTAGTGGAGAGAACGATA 1633 | | || || | || ||| |||| | ||| | |||||||| || | Sbjct 730 --G----T---GT----TC-T-GT--ACAGACAC---T-TTTA-A-TGGAGAGAGGGACA 766 Query 1634 T-GAAGAATTCCAAACTTAGATCTCTCTTGTTTATTCCAGTTGGGTATAGTAGGTTTTCG 1692 | || |||||||||||||||||||||||||||||||| |||| |||| | | ||| || Sbjct 767 TTGA-GAATTCCAAACTTAGATCTCTCTTGTTTATTCTAGTTTCGTATCG--G-TTTGCG 822 Query 1693 ATGGGATCAAACTTCATAGA-GTTACCATTGTTGAGGGTTTTAGATCTC-GATGGAGCTA 1750 ||| ||||| ||||||| || |||||||||||||||||||||||||||| | | ||||| Sbjct 823 ATGAGATCAGACTTCAT-GATGTTACCATTGTTGAGGGTTTTAGATCTCAG-TAGAGCTG 880 Query 1751 AATTTAAAGGAGGGAAGTTACCCTCTAGCATTGGAAAGCTCATCCACTTGAAGTATTTGA 1810 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 881 AATTTGAAGGAGGGAAGTTACCCTCTAGCATTGGAAAGCTCATCCACTTGAAGTATTTGA 940 Query 1811 GTTTATATCA-GGCATCTGTAACTTATTTACCTTCATCTTTGCGGAACCTGAAGTCGCTG 1869 |||||||| | ||||| ||||||| || |||||||||||||||||||||||||||||||| Sbjct 941 GTTTATAT-ATGGCATATGTAACTCATCTACCTTCATCTTTGCGGAACCTGAAGTCGCTG 999 Query 1870 CTCTATCT-CAATCTACGTA-T--A-AATTCT-G-G-TCA-GCTG-ATTAACGTGCCCAA 1919 ||||| || ||||||| | | | | ||| || | | | | || | |||| ||||||||| Sbjct 1000 CTCTA-CTTCAATCTA-GAAATTTATAATCCTCGAGGTGACGC-GCATTA-CGTGCCCAA 1055 Query 1920 TGTCTTTAAAGAGATGCTAGAACTGAGATAC--CTCAGCTTACCATGG-GAAAGAAGTAG 1976 |||||| |||||||||||||||||||||||| ||| | |||||| || ||| || ||| Sbjct 1056 TGTCTTCAAAGAGATGCTAGAACTGAGATACTTCTC-G-TTACCAAGGAGAAC-AACTAG 1112 Query 1977 TTTGACAAAGTTGGAACTGGGTAATCTACTCAAATTGGAGACGTTGATA-AATTTCTCAA 2035 | ||||||||||||| |||||||||||||||||||||||||||||| | |||||||||| Sbjct 1113 TAGGACAAAGTTGGAATTGGGTAATCTACTCAAATTGGAGACGTTGA-AGAATTTCTCAA 1171 Query 2036 CAAAGGATAGCAGTGTGACAGATCTTCACCGTATGACAAAGCTAAGGACCCTCCAAATCT 2095 || || |||||| |||||| ||||||||| |||||| || |||||||| ||||| |||| Sbjct 1172 CAGAGAATAGCAATGTGACGGATCTTCACTGTATGAGAAGGCTAAGGAGTCTCCAGATCT 1231 Query 2096 TAATCAGTGGCGAGGGGTTGCATATGGAAACTCTGTCTTCAGCTCTAAGT-ATGTTGGGA 2154 |||||||||||||||||| || |||||||||||| || ||| |||| || | ||| | Sbjct 1232 TAATCAGTGGCGAGGGGTGGCGTATGGAAACTCTATCATCAACTCTCGGTGAA-TTGAAA 1290 Query 2155 CACTTGGAA-GATCTTAC--AGTAACACCTTCCGAGAATTCCGTTCAGT-TCAAGCACCC 2210 ||||||||| | ||| || | ||| | || || ||||||| ||||| | |||||||||| Sbjct 1291 CACTTGGAACG-TCT-ACTTA-TAAAATCTCCCAAGAATTCTGTTCA-TCTCAAGCACCC 1346 Query 2211 GAAGTTGATATATAGGCCGATGTTACCTGATGTGCAACATTTTCCTTCTCATCTTACAAC 2270 ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1347 AAAGTTGATATATAGGCCAATGTTACCTGACGTGCAACATTTTCCTTCTCATCTTACAAC 1406 Query 2271 CATATCTCTAGTATATTGTT-T--TTTGGAGGAGGATCCGATGCCAACTCTAGAGAAACT 2327 |||||||||| | || ||| | ||||||||||||||||||||||| |||||||||||| Sbjct 1407 CATATCTCTA--A-ATGGTTCTCGTTTGGAGGAGGATCCGATGCCAATTCTAGAGAAACT 1463 Query 2328 GCTACAACTGAAAGTGG-TTTCTTTATGGTACAACGCCTATGTTGGGAGGAGAATGGTTT 2386 ||||||| ||||| ||| ||||||||||| | ||||| |||||||||||||||||||||| Sbjct 1464 GCTACAATTGAAA-TGGGTTTCTTTATGGGAGAACGCTTATGTTGGGAGGAGAATGGTTT 1522 Query 2387 GCACCGGCGGTGGGTTTCCTCCATTGCACAGGCT-TGAAATATGGGGACTAGATGCCTTG 2445 || || ||||||||||||||| |||||| |||| | || || | |||||| | | | Sbjct 1523 GCTCCAGCGGTGGGTTTCCTCAATTGCATGGGCTCTCAA-TAAGCATACTAGAGGAATGG 1581 Query 2446 GAAGAGTGGATAGTAGAAGAAGGCTCCATGCCCCTTCTTCATAC 2489 ||||||||||| |||||||||||||||||||| | |||||||| Sbjct 1582 GAAGAGTGGATTGTAGAAGAAGGCTCCATGCCACAACTTCATAC 1625 > Ahg475351 jgi|Araly1|475351|fgenesh2_kg.2__481__AT1G59620.1 Length=2655 Score = 207 bits (112), Expect = 3e-52 Identities = 355/470 (76%), Gaps = 25/470 (5%) Strand=Plus/Plus Query 2201 TCAAGCACCCGAAGTT--G-ATATATAGGCCGATGTTACCTGATGTGCAACATTTTCCTT 2257 |||| || | |||||| | ||||||| ||| | ||||||||||| ||||| ||||||| Sbjct 2075 TCAAACATCTGAAGTTGAGAATATATATGCCAAGGTTACCTGATGAACAACAATTTCCTT 2134 Query 2258 CTCATCTTACAACCATATCTCTAGTAT-ATTGTTTTTTGGAGGAGGATCCGATGCCAACT 2316 || | |||| || ||||||||||| | | |||| |||| |||| ||||| ||||| | | Sbjct 2135 CTTACCTTAGAAACATATCTCTAG-CTGAGTGTTGTTTGAAGGAAGATCCAATGCCGATT 2193 Query 2317 CTAGAGAAACTGCTACAACTGAAA-GTGGTTTCTTTATGGTA-CAACGCCTATGTT--GG 2372 |||||||| ||| | | ||| ||| | ||| ||||| | | ||| || | || || Sbjct 2194 CTAGAGAAGCTGATTC-ACTTAAATGAGGTCAGTTTATCGCATCAA--TCT-TTTTGCGG 2249 Query 2373 GAGGAGAATGGTTTGCACCGGCGGTGGGTTTCCTCCATTGCACAGGCTTGAAATATGGGG 2432 || ||||||||||||| | || ||||||||||||| ||||| | ||| || | || || Sbjct 2250 GAAGAGAATGGTTTGCTCGGGTGGTGGGTTTCCTCAATTGCTGAAGCTCGATTTGTGTGG 2309 Query 2433 ACTAGATGCCTTGGAAGAGTGGATAGTAGAAGAAGGCTCCATGCCCCTTCTTCATACTCT 2492 |||||||| | |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2310 ACTAGATGAATGGGAAGAGTGGATAGTAGAAGAAGGCTCCATGCCCCTTCTTCATAAGCT 2369 Query 2493 G-CATATT-GTAGACTG-TAAGAAATTAAAGGAGATTCCAGATGGGCTGCGATTTATCAG 2549 | | | | | | || | | |||||||||||| |||| ||||||||| |||||||| Sbjct 2370 GAC-TCTCCGCA-AC-GATCCTAAATTAAAGGAGTTTCCTGATGGGCTGAAATTTATCAC 2426 Query 2550 TTCATTA-AAGGAATTGGC-TATCCGCACAAATGAAAAAGTA-TTTCAGAAGAAGGTATC 2606 || || ||| || || | | || | |||| || | | ||| ||||||| | || Sbjct 2427 ATCTTTGGAAG-AACTG-CATGTCATCTTAAAT-AATTGGGACTTTAAGAAGAAACTGTC 2483 Query 2607 CAAAGGAGGAGAAGATTACTATAAAATGCAACACGTCCCTCTTATTCGAT 2656 || ||||||| |||||| || ||| | |||||| | ||||| |||||| Sbjct 2484 CAGGGGAGGAGCAGATTATTACAAAGTCCAACACATTCCTCTCGTTCGAT 2533 > Ahg907496 jgi|Araly1|907496|Al_scaffold_0002_577 Length=1827 Score = 204 bits (110), Expect = 3e-51 Identities = 296/381 (78%), Gaps = 31/381 (8%) Strand=Plus/Plus Query 2189 ATTCCGTTCAGT-T-CAAGCACCCGAAGTTG--A-TATATAGGCCGATGTTACCTGATGT 2243 |||||||||| | | ||| |||| || ||| | |||||| ||| | ||||||||||| Sbjct 1358 ATTCCGTTCA-TCTCCAA-CACCTAAACTTGACACTATATATGCCAAGGTTACCTGATGA 1415 Query 2244 GCAACATTTTCCTTCTCATCTTACAACCATATCTC-TAGTATATTGTTTTTTGGAGGAGG 2302 |||| |||| |||||||| |||||||||||||||| | || | ||| ||||| ||||| Sbjct 1416 GCAATATTTCCCTTCTCACCTTACAACCATATCTCTTTGT-GAATGTCGTTTGGTGGAGG 1474 Query 2303 ATCCGATGCCAACTCTAGAGAAACTGCTACAACTGA-A--A-GT-GGTTTCTTTATGGTA 2357 |||| ||||||| ||||||||| ||||| |||| | | | || |||| |||| || Sbjct 1475 ATCCAATGCCAATTCTAGAGAAGCTGCT-TAACTTATATGATGTCAGTTTATTTA--GT- 1530 Query 2358 CAACGCCTATGT-TGGGAGGAGAATGGTTTGCACCGGCGGTGGGTTTCCTCCATTGCACA 2416 ||| || | | ||||||||||||||||||| | |||||||||||||||| ||||| | Sbjct 1531 CAA--TCTTTCTGTGGGAGGAGAATGGTTTGCTCGGGCGGTGGGTTTCCTCGGTTGCAGA 1588 Query 2417 GGCTTGAA--ATATGGGGACTAGATGCCTTGGAAGAGTGGATAGTAGAAGAAGGCTCCAT 2474 | | || ||||| ||| |||| | | |||||||||||||||||||||||||||||| Sbjct 1589 -ACCT-AATGATATGTGGAATAGAAGAGTGGGAAGAGTGGATAGTAGAAGAAGGCTCCAT 1646 Query 2475 GCCCCTTCTTCATACTCTGCATATT-GTAGACTGTAAGAAA-TTAAAGGAGA-TTCCAGA 2531 ||| ||||||||| | || |||| || | ||| ||| || ||||| | |||| || Sbjct 1647 GCCACTTCTTCATTTTTTGTTTATTAGTTGT-TGTCC-AAAGTTTAAGGA-ACTTCCTGA 1703 Query 2532 TGGGCTGCGATTTATCAGTTC 2552 ||| ||| ||||||||| ||| Sbjct 1704 TGGTCTGAGATTTATCACTTC 1724 > Ahg914885 jgi|Araly1|914885|Al_scaffold_0001_5139 Length=2757 Score = 180 bits (97), Expect = 6e-44 Identities = 273/355 (77%), Gaps = 23/355 (6%) Strand=Plus/Plus Query 2217 GATATATAGGCCGATGTTACCTGATGTGCAACATTTTCCTTCTCATCTTACA-ACCATAT 2275 ||| |||| ||| | | ||||||| || |||||||| |||||||| || | | |||||| Sbjct 2304 GATTTATATGCCAAAGCTACCTGAGGTACAACATTTCCCTTCTCACCTCA-AGACCATAA 2362 Query 2276 CTCTAGTATATTGTTTTTTGGAGGAGGATCCGATGCCAACTCTAGAGAAACTGCTACAAC 2335 ||||| | | |||| ||||||||||||||| ||||| | ||||||||| || | || Sbjct 2363 CTCTAACAGAGTGTTGTTTGGAGGAGGATCCCATGCCCATTCTAGAGAAGTTGTTTCAGT 2422 Query 2336 TGAAAGTGGTTTC-TTTATGGTA-CAA-CGCCTATGTTGGGAGGAGAATGGTTTGCACCG 2392 |||||| || ||| |||| ||| ||| || | || ||||| ||||||||||||| ||| Sbjct 2423 TGAAAGAGG-TTCATTTAAAGTATCAATCG-TTCTG-TGGGAAGAGAATGGTTTGCTCCG 2479 Query 2393 GCGGTGGGTTTCCTCCATTGCACAGGCTT-GA--AATATGGGGACTAGATGCCTTGGAAG 2449 || ||| ||||||| | | ||| | || | || | | | || | | | ||||| Sbjct 2480 GCAATGGATTTCCTCAACT--ACA-GTTTCTATCGATTTTTGAATTAAAGGAATGGGAAG 2536 Query 2450 AGTGGATAGTAGAAGAAGGCTCCATGCCCCTTCTTCATACTCTG-CATATTGTAGACT-G 2507 ||||||||||||||||||||||||||||||||||||||||| || | |||| | || | | Sbjct 2537 AGTGGATAGTAGAAGAAGGCTCCATGCCCCTTCTTCATACTTTGAC-TATT-TGGAGTTG 2594 Query 2508 TAAGAAA-TTAAAGGAGA-TTCCAGATGGGCTGCGATTTATCAGTTCATT-AAAG 2559 | |||| |||||||| | ||||||||||| || ||| ||||| ||| || |||| Sbjct 2595 TG-GAAAATTAAAGGA-ACTTCCAGATGGGATGAGATATATCACTTCCTTGAAAG 2647 > Ahg907562 jgi|Araly1|907562|Al_scaffold_0002_643 Length=2619 Score = 154 bits (83), Expect = 3e-36 Identities = 197/250 (79%), Gaps = 16/250 (6%) Strand=Plus/Plus Query 2287 TGTTTTTTGGAGGAGGATCCGATGCCAACTCTAGAGAAACTGCTACAACTGAAAGTGGTT 2346 |||| ||||||||||||||| ||||| | ||| |||||| |||| || | |||| || | Sbjct 2347 TGTTATTTGGAGGAGGATCCAATGCCGATTCTTGAGAAATTGCTTCATTTAAAAGAGG-T 2405 Query 2347 TC-TTTATGGTACAAC-GCCTATGT-TGGGAG-GAGAATGGTTTGCACCGGCGGTGGGTT 2402 || |||| || | | | || | | ||| || || |||||||||| | ||||||||||| Sbjct 2406 TCGTTTA-GGGATTGCTG-CTTTCTATGGAAGCGA-AATGGTTTGCTCGGGCGGTGGGTT 2462 Query 2403 TCCTCCA-TTGCACAGGCTTGAAATATGGGGACTAGATGCCTTGGAAGAGTGGATAGTAG 2461 |||| || ||| | | ||| || ||| ||||| || || ||||||||||||||||| Sbjct 2463 TCCT-CAGTTGGAGAAGCTCGATATAAATAGACTATATAACTGGGAAGAGTGGATAGTAG 2521 Query 2462 AAGAAGGCTCCATGCCCCTTCTTCATACTCTG-CATATTG-TAGACTGT-AAGAAATTAA 2518 ||||||||||||||||||||||||||||||| | |||| |||| ||| || ||||||| Sbjct 2522 AAGAAGGCTCCATGCCCCTTCTTCATACTCTTTC-TATTAATAGA-TGTCAA-AAATTAA 2578 Query 2519 AGGAGATTCC 2528 | ||| |||| Sbjct 2579 AAGAGCTTCC 2588 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 102653210275 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5