BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59840.1
Length=1162
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475325 jgi|Araly1|475325|fgenesh2_kg.2__455__AT1G59840.1 1489 0.0
> Ahg475325 jgi|Araly1|475325|fgenesh2_kg.2__455__AT1G59840.1
Length=1088
Score = 1489 bits (806), Expect = 0.0
Identities = 990/1077 (92%), Gaps = 19/1077 (2%)
Strand=Plus/Plus
Query 16 CATCTTCAATGGAAGCGAGAATCATCCTCCTCCGAATTCAAATCCCTTGGAGCGCTAATC 75
||||||||||| |||||||||||| |||||| ||||||||||||||||| | ||||||
Sbjct 1 CATCTTCAATGAAAGCGAGAATCA---TCCTCCAAATTCAAATCCCTTGGAACCCTAATC 57
Query 76 GCCAATTCTCTCATCCTCCTTTAGATTTCCCTCGTTTTATCAGAGC---TTCTTCTTC-- 130
|| ||||||||| | |||| | ||||||||| || ||||||||||| |||||||||
Sbjct 58 GCAAATTCTCTCGTACTCCATCAGATTTCCCGCGCTTTATCAGAGCTTATTCTTCTTCTT 117
Query 131 C-TCAACCTCACAGAAGCCGAAAACTTACGA-AGGTCCGAAACCGAGGAAGAATTTAGTA 188
| ||||||||||||||||||| || |||| | ||||||||||||||| |||||||| |||
Sbjct 118 CTTCAACCTCACAGAAGCCGAGAAGTTAC-AGAGGTCCGAAACCGAGCAAGAATTTGGTA 176
Query 189 GCTGATTTCATTTCCAAAAACGATGACTTGGTTCGAAGCTTACCGATCTACGTCGGGGGC 248
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 177 GCTGATTTCATTTCCAAAAACGATGACTTGGTTCGGAGCTTACCGATCTACGTCGGAGGC 236
Query 249 GCTTCTCTTTTGGCCGTTCTCTTTAATCGGACTGTTTCCGGTATCGCTCCTGTTGCCGAT 308
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 237 GCTTCTCTTTTAGCTGTTCTCTTCAATCGGACTGTTTCCGGTATCGCTCCTGTTGCCGAT 296
Query 309 GCTAGCAGCTCACAGTCTAGAGCAGATCTATTAGCGCTTGGCTTGGCTGTCACCAATCTA 368
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| ||
Sbjct 297 GCTAGCAGCTCTCAGTCTAGAGCAGATCTATTGGCACTTGGCTTGGCTGTCACCAATTTA 356
Query 369 TTGACCGGTTTAGTCTGGTTATCGATTCGACCTAAGTCAATAACACCTGTA-AATCC-GA 426
||||| |||||||||||||||||||||||||||||||| |||||||||||| || || |
Sbjct 357 TTGACTGGTTTAGTCTGGTTATCGATTCGACCTAAGTCCATAACACCTGTACAA-CCTG- 414
Query 427 AAGGTGTGGAATGCAAAGTTGTAGAATCTGATCTTCCTGCATCGATGGTTTCCGAGTTGT 486
| ||||| || || |||||||||||||| | ||||||||||||| | |||||||| ||||
Sbjct 415 ACGGTGTCGAGTGGAAAGTTGTAGAATCCGGTCTTCCTGCATCGGTAGTTTCCGAATTGT 474
Query 487 TATGGGCTTGGGAATCTCTTAAGGTAGCAACATGTTGTAAGTCTCTAGTTATTGTCTACA 546
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TATGGGCTTGGGAATCTTTTAAGGTAGCAACATGTTGTAAGTCTCTAGTTATTGTCTACA 534
Query 547 ATGGAATTTGCCTTATTCAAATTGGGATGGTAGCTGAATCTCCAGAAGATAAGAAAACAG 606
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||
Sbjct 535 ATGGAATTTGCCTTATTCAAATTGGGATGGTTGCTGAATCTCCTGAAGATAAGAAAGCAG 594
Query 607 TCATAGTAAAGACCGATAAGTTGATGCAAGGATCGGTTTACAGAGGGGTTATGAAATCCA 666
|||||||||| ||||||||| |||||||||||||||||||| |||| || |||||||| |
Sbjct 595 TCATAGTAAACACCGATAAGCTGATGCAAGGATCGGTTTACCGAGGTGTAATGAAATCTA 654
Query 667 AAGCACAGAGTTACTTGGCTAATCTTTCTCTTTATCCTGGGAGATCAGAGCTGCCATTTC 726
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 655 AAGCACAGAGTTACTTGGCCAATCTTTCTCTTTATCCTGGGAGATCAGAGCTACCATTTC 714
Query 727 TACCTGCAAATACACAGGCGGTGATTTTGCAGCCGCTTGGAGATAAAGGAATCGCAGTCA 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TACCTGCAAATACACAGGCGGTGATTTTGCAGCCGCTTGGAGATAAAGGAATCGCAGTCA 774
Query 787 TTGGTGGAAATACGATTAGAGGATTCACGTCTTCAGACCAGGCTTGGATTTCTTCAATTG 846
|||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 775 TTGGTGGAAACACGATTAGAGGCTTCACGTCAGCAGACCAGGCTTGGATTTCTTCAATTG 834
Query 847 GGGAGAAGCTAGATGCGACACTGGGGAGATATTTTGTTGATTCTGATGAGATTTCCAGAG 906
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 835 GGGAGAAGCTAGATGCGACACTGGGGAGATATTTTATTGATTCTGATGAGATTTCCAGAG 894
Query 907 TAACAGTTTGAAAGCCACCAGACCAGAAAAAACAGAAAATGGATATAATCATATTGCGAA 966
||||||||||||||| |||||||| |||||| | ||||| |||| ||||||| || ||||
Sbjct 895 TAACAGTTTGAAAGCAACCAGACCGGAAAAA-CGGAAAA-GGATGTAATCATCTTTCGAA 952
Query 967 AACACATTACATGCATTGAGAACTAAAGGTAACTGTTCATTGTGTGATCATGTGGTTATA 1026
||||||||||| | || || ||||||||||| ||||||||||| ||||||||||||||
Sbjct 953 AACACATTACAAGGATCGATCACTAAAGGTAATTGTTCATTGTG--ATCATGTGGTTATA 1010
Query 1027 CAAAGTTCAAATGAATTCATTGTGTGATCATGTAGTTACATAAAGTCGAAATAAATT 1083
|||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1011 TAAAGTTGAAATGAATTCATTGTGTGATCATGTGGTTACATAAAGTCGAAATGAATT 1067
Score = 134 bits (72), Expect = 2e-30
Identities = 88/96 (92%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 1049 TGTGATCATGTAGTTACATAAAGTCGAAATAAATTCAATGTGTCATCATGTGGTTACATT 1108
||||||||||| |||| ||||||| ||||| |||||| ||||| |||||||||||||||
Sbjct 993 TGTGATCATGTGGTTATATAAAGTTGAAATGAATTCATTGTGTGATCATGTGGTTACATA 1052
Query 1109 AAGTTGAAATGAATTGTAAAAATAGCTTCAGAAAAC 1144
|||| |||||||||||||||||||||||||||||||
Sbjct 1053 AAGTCGAAATGAATTGTAAAAATAGCTTCAGAAAAC 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43345756629
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5