BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G59850.1 Length=1497 Score E Sequences producing significant alignments: (Bits) Value Ahg907487 jgi|Araly1|907487|Al_scaffold_0002_568 2013 0.0 > Ahg907487 jgi|Araly1|907487|Al_scaffold_0002_568 Length=1494 Score = 2013 bits (1090), Expect = 0.0 Identities = 1369/1504 (91%), Gaps = 17/1504 (1%) Strand=Plus/Plus Query 1 ATGCCTTCCGTTCAAATCCGTTCTTCTCCGTCTCA---TTCACAGCC-G-G-CTATGACG 54 ||||||||||||||||||||||||||||||||||| ||||||||| | | | |||||| Sbjct 1 ATGCCTTCCGTTCAAATCCGTTCTTCTCCGTCTCATTCTTCACAGCCGGCGCCGATGACG 60 Query 55 GTTACTGATCTCAAGCAACGAGTCATCGCTTGTCTCAATCGTCTCTCTGATCGCGATACT 114 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||| Sbjct 61 GTTACTGATCTCAAGCAACGAGTCATCGCCTGTCTCAATCGTCTCTCTGATCGTGACACT 120 Query 115 CTT-GCTCTCGCTGCCGCAGAGCTTGATTCAATCGCTCTTAATCTCTCACCGGAGACTTT 173 || ||||||| |||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 121 -TTATCTCTCGCCGCCGCAGAGCTTGATTCAATTGCTCTTAATCTCTCACCGGAGAATTT 179 Query 174 CTCTTTATTTATTAACTGTCTTCAGAGTACAGACTCTTCCGCAAAATCTCCGGTGAGGAA 233 |||| | ||||| ||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 180 CTCTCTGTTTATAAACTGTCTTCAGAGTACAGACTCTTCCGCGAAATCTCCGGTGAGAAA 239 Query 234 ACATTGCGTTTCGCTTCTCTCTGTTCTTTCTCGTTCTCATGGCGATTCTCTCGCTCCTCA 293 |||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||| Sbjct 240 ACATTGCGTTTCGCTTGTCTCTGTTCTTTCTCGTTCTCACGGTGATTCTCTCGCTCCTCA 299 Query 294 CCTCTCGAAGATGGTCTCCACCGTTCTCCGCCGCCTCCGTGATCCTGATTCCTCCGTCCG 353 |||||| || ||||||||||| || |||||||||||||||||||| || ||||||||||| Sbjct 300 CCTCTCAAAAATGGTCTCCACTGTCCTCCGCCGCCTCCGTGATCCCGACTCCTCCGTCCG 359 Query 354 TGCCGCTTGTGTTGCCGCTTCCGTTGATATGACTACCAACATCACCGGACAGCCTTTCTC 413 || ||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 360 CGCTGCTTGTGCTGCTGCTTCCGTAGATATGACTACCAACATCACCGGACAGCCATTCTC 419 Query 414 CATCCTTTTCGGACCAATGATCGAAACGGTTATCCACGATTGCGATCCCAATGCGCAGAT 473 |||||| || || || ||||| ||| | |||||||||| |||||||||||||| ||||| Sbjct 420 CATCCTCTTGGGGCCGATGATTGAAGCACTTATCCACGACTGCGATCCCAATGCACAGAT 479 Query 474 CAGCGCTGCTATGTGCCTTGCTGCGGCGGTAGACGCAGCAGATGAGCCGGATGTTGAGCA 533 ||||||| |||||||||| || || ||||| || || ||||||| |||||||||||| Sbjct 480 TGGCGCTGCCGTGTGCCTTGCGGCTGCAGTAGATGCCGCCGATGAGCTGGATGTTGAGCA 539 Query 534 ACTGCAGAAGGCCCTGCCGAAGATTGGGAAGTTGCTTAAATCGGAAGGTTTCAAGGCGAA 593 |||||||||||| || || || || ||||| ||||| ||||| || |||||||||||||| Sbjct 540 ACTGCAGAAGGCACTTCCTAAAATCGGGAAATTGCTAAAATCTGATGGTTTCAAGGCGAA 599 Query 594 AGCGGAACTTCTTGGAGCCATAGGAACCGTAATCGGCGCTGTTGGCGGTCGAAACAGCGA 653 |||||||||||||||||||||||| | |||||| ||| |||||||||| ||||||||||| Sbjct 600 AGCGGAACTTCTTGGAGCCATAGGGAGCGTAATTGGCACTGTTGGCGGCCGAAACAGCGA 659 Query 654 AAAGGCGGTGCTAGACTGGCTTTTACCAAACGTCTCGGAGTTTCTAAGCAGCGACGATTG 713 ||||||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||| Sbjct 660 AAAGGCGGTGCTAGATTGGCTTTTACCAAACGTCTCAGAGTTTCTTAGCAGCGATGATTG 719 Query 714 GCGTGCGAGGAAAGCTGCTGCGGAGGCAATGGCTAGAGTGGCTATGGTAGAAGAAGAATT 773 ||||||||| |||||||| || ||||| ||||||||||||||| ||| ||||||||| | Sbjct 720 GCGTGCGAGAAAAGCTGCCGCAGAGGCGATGGCTAGAGTGGCTTTGGCGGAAGAAGAACT 779 Query 774 AGCTCCACTGTATAAGAAGACATGTCTAGGTATTCTTGAGAGCAGACGATTCGATAAGGT 833 |||||| ||||||||||||||||| ||| |||||||||||||||| ||| |||||||| Sbjct 780 AGCTCCTTTGTATAAGAAGACATGTGTAGCTATTCTTGAGAGCAGAAAATTTGATAAGGT 839 Query 834 CAAACTTGTTAGAGAGACAATGAATCGTACATTGGGTTTATGGAAGCAACTTGAAGGTGA 893 |||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||| Sbjct 840 CAAACTTGTTAGAGAGACGATGACTCGTACATTGAGTTTATGGAAGCAACTTGAAGGTGA 899 Query 894 TTCAACAGAGGTCTCAGAGTCTTCTTCCTCCTCCAAATCAGCTTCTTCTGGTTTGTCTGC 953 ||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| Sbjct 900 TTCAACAGAGGTCTCAGAGTCATCTTCCTCCTCCAAAACAGCTTCTTCTGGTTTCTCTGC 959 Query 954 GACTTCAGGAAAGAGAAGCAACACATTGAAAGGCAAAGATAGGAATTTAAACACACCATT 1013 ||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||| | Sbjct 960 GACTTCAGGAAAGAGAAGCAATACATTGAGAGGCAAAGATAGGAATTTAAACGCACCACT 1019 Query 1014 AAGCTCAAAGTCGAATGATGTTGAGCCATTAGATCGTGGTGACACTCCTAAGGATGTTGA 1073 |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 1020 AAGCTCAAAGTCAAATGATGTTGAGCCTTTAGATCGTGGTGACACTCCTAAGGATGTGGA 1079 Query 1074 GCAGGAAGCTGTTGTGTCGAAAGAGAAGCGGAATCGTTCGACATTGGGAGCTAAACGGGT 1133 |||||||||||| || ||||||||||||||||| | || | || ||||||||||| Sbjct 1080 GCAGGAAGCTGTCGTATCGAAAGAGAAGCGGAAAA---C-AC-T-GGAAGCTAAACGGGC 1133 Query 1134 TCTGTTCCCGGCAAAGATGCATAAGGTCAAAGAGAATGGGTCGAACAAGTCACAAGTTGT 1193 |||||| |||||||||| | |||||||||||||||||| ||||||||||||||||||||| Sbjct 1134 TCTGTTTCCGGCAAAGACGTATAAGGTCAAAGAGAATGCGTCGAACAAGTCACAAGTTGT 1193 Query 1194 TCAGAGTAGTGATGAGGAGAGTCCTAAAACTGACAGTGGTAGTAGCAGTTCTTCTCAGGC 1253 ||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||| Sbjct 1194 TCAGAGTAGTGATGAGGAGAGTCCTAAAACTGAAAGTGGTAGTAGCAGTTCT-C--AGGC 1250 Query 1254 AAAGAGTAATGCAGAAGAGTTGTCTCTGATAAGACACCAGATTACACAGATCGAAAAACA 1313 ||||| |||||||||||||||||||||||||||| ||||||| || |||||||||||||| Sbjct 1251 AAAGAATAATGCAGAAGAGTTGTCTCTGATAAGAAACCAGATCACTCAGATCGAAAAACA 1310 Query 1314 GCAGTCCAGTCTGTTAGATCTCTTTCAGAAGTTCATGGAGAGCTCGCATAACGGAATGCA 1373 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 1311 ACAGTCCAGTCTGTTAGATCTCTTTCAGAAGTTCATGGAGAGCTCGCAGAACGGTATGCA 1370 Query 1374 ATCTCTAGAGAGACGAGTACGTGGTCTAGAAACATCCTTCAGCGTAATCTCCACTGATTT 1433 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1371 ATCTCTGGAGAGACGAGTACGTGGTCTAGAAACATCCTTCAGCGTAATCTCCACTGATTT 1430 Query 1434 ACTAGTCTCTCGCAGCATAACACAAAATGGAAACCACAAACGAAACGCCTGTCGACAGAA 1493 || |||||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1431 GCTGGTCTCTCGCACCATAACACAAAATGGAAACCCCAAACGAAACGCCTGTCGACAGAA 1490 Query 1494 CTGA 1497 |||| Sbjct 1491 CTGA 1494 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56030750395 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5