BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59860.1
Length=720
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925077 jgi|Araly1|925077|scaffold_200638.1 725 0.0
Ahg481866 jgi|Araly1|481866|fgenesh2_kg.4__926__AT2G29500.1 401 3e-111
> Ahg925077 jgi|Araly1|925077|scaffold_200638.1
Length=512
Score = 725 bits (392), Expect = 0.0
Identities = 477/516 (92%), Gaps = 13/516 (3%)
Strand=Plus/Plus
Query 42 TTTCGAAATCAAC-C-GAGAAAATGTCGCTGATTCCAAGCTTCTTCGGCAACAACAGGCG 99
|||||||||| || | ||||||||||||| ||||||||||||||||||| |||||| ||
Sbjct 1 TTTCGAAATC-ACTCAAAGAAAATGTCGCTAATTCCAAGCTTCTTCGGCAGCAACAGACG 59
Query 100 AATCAACAACAACATATTCGATCCATTCTCACTCGACGTATGGG---ATCCATTCAAGGA 156
||||||||||| ||| ||||||||||||||||||||||| |||| |||||||||||||
Sbjct 60 AATCAACAACAGCATCTTCGATCCATTCTCACTCGACGTTTGGGATCATCCATTCAAGGA 119
Query 157 ACTTCAATTCCCGTCATCGTC-T--TCGTCGGCGATAGCAAACGCACGTGTGGATTGGAA 213
|||||||||||||| || || | || ||||||||||| |||||||||||||| |||||
Sbjct 120 TCTTCAATTCCCGTCTTCTTCATCGTCATCGGCGATAGCGAACGCACGTGTGGACTGGAA 179
Query 214 AGAGACGGCGGAGGCGCACGTGTTCAAGGCGGATTTACCGGGGATGAAGAAAGAAGAGGT 273
|||||||| ||||||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct 180 AGAGACGGAGGAGGCGCACGTGTTCAAGGCGGATCTGCCAGGGATGAAGAAAGAAGAGGT 239
Query 274 TAAAGTAGAGATTGAGGATGATAGTGTGCTTAAGATCAGCGGAGAGAGACACGTTGAGAA 333
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 240 TAAAGTAGAGATAGAGGATGATACTGTGCTTAAGATCAGCGGAGAGAGACACGTTGAGAA 299
Query 334 AGAGGAGAAGCAGGACACGTGGCATCGTGTAGAGAGATCGAGTGGGGGATTCTCGAGGAA 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGAGGAGAAGCAGGACACGTGGCATCGTGTAGAGAGATCGAGTGGGGGATTCTCGAGGAA 359
Query 394 GTTTAGGTTACCGGAGAATGTGAAGATGGATCAAGTTAAAGCTTCAATGGAGAATGGTGT 453
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 360 GTTTAGGTTACCGGAGAATGTGAAGATGGATCAAGTTAAGGCTTCTATGGAGAATGGAGT 419
Query 454 TTTGACTGTGACTGTGCCTAAAGTGGAGACTAATAAGAAGAAGGCTCAAGTTAAGTCTAT 513
||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 420 TTTGACTGTGACTGTGCCTAAGGTTGAGACTAA---GAAGAAGGCTCAAGTTAAGTCTAT 476
Query 514 TGATATCTCTGGCTAA-GCCAATTTAGCTTGATTTG 548
||| |||||||||||| ||||||||||||||| |||
Sbjct 477 TGAAATCTCTGGCTAAAGCCAATTTAGCTTGAATTG 512
> Ahg481866 jgi|Araly1|481866|fgenesh2_kg.4__926__AT2G29500.1
Length=589
Score = 401 bits (217), Expect = 3e-111
Identities = 373/445 (84%), Gaps = 23/445 (5%)
Strand=Plus/Plus
Query 59 AAAATGTCGCTGATTCCAAGCTTCTTCGGCAACAACAGGCGAATCAACAACAACATATTC 118
||||||||| ||||||||||||||||| |||||||||||| | ||||||||| |||
Sbjct 1 AAAATGTCGATGATTCCAAGCTTCTTCAACAACAACAGGCG--T-GGCAACAACATCTTC 57
Query 119 GATCCATTCTCACTCGACGTATGGGATCCATTCAAGGAACTT-CA--A--TTC-CCGTCA 172
|| || |||||||||||||| |||||||||||||| |||||| || | ||| | |||
Sbjct 58 GACCCGTTCTCACTCGACGTTTGGGATCCATTCAAAGAACTTACATCATCTTCGCTTTCA 117
Query 173 TCGT--CTTCGTCGGCGATAGCAAACGCACGTGTGGATTGGAAAGAGACGGCGGAGGCGC 230
||| | || ||||| | |||||||||||||| |||| ||||||| |||||||||
Sbjct 118 -CGTGAAAAC-TCTGCGATCGTTAACGCACGTGTGGACTGGAGAGAGACGCCGGAGGCGC 175
Query 231 ACGTGTTCAAGGCGGATTTACCGGGGA-TGAAGAAAGAAGAGGTTAAAGTAGAGATTGAG 289
|||||||||| |||||||| || |||| ||||||||||||| || ||||| |||||||||
Sbjct 176 ACGTGTTCAAAGCGGATTTGCC-GGGATTGAAGAAAGAAGAAGTGAAAGTTGAGATTGAG 234
Query 290 GATGATAGTGTGCTT-AAGATCAGCGGAGAGAGACACGTTGAGAAAGAGGAGAAGCAGGA 348
|| |||||||| || ||||||||||||||||||||||| |||||||| || ||| | ||
Sbjct 235 GAAGATAGTGT-TTTGAAGATCAGCGGAGAGAGACACGTGGAGAAAGAAGATAAGAATGA 293
Query 349 CACGTGGCATCGTGTAGAGAGATCGAGTGGGGGA-TTCT-CGAGGAAGTTTAGGTTACCG 406
||||||||| ||||| |||||||||||| || | || | |||||| ||||||| | |||
Sbjct 294 CACGTGGCACCGTGTGGAGAGATCGAGT-GGACAGTT-TACGAGGAGGTTTAGGCTGCCG 351
Query 407 GAGAATGTGAAGATGGATCAAGTTAAAGCTTCAATGGAGAATGGTGTTTTGACTGTGACT 466
|||||||||||||||||||||||||| ||| | |||||||||||||| |||||||||||
Sbjct 352 GAGAATGTGAAGATGGATCAAGTTAAGGCTGCTATGGAGAATGGTGTGTTGACTGTGACG 411
Query 467 GTGCCTAAAG-TGGAGACTAATAAG 490
|||||||| | || |||| || |||
Sbjct 412 GTGCCTAAGGCTG-AGACCAAGAAG 435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26495427315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5