BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G59900.1 Length=1468 Score E Sequences producing significant alignments: (Bits) Value Ahg475318 jgi|Araly1|475318|fgenesh2_kg.2__448__AT1G59900.1 2222 0.0 > Ahg475318 jgi|Araly1|475318|fgenesh2_kg.2__448__AT1G59900.1 Length=1434 Score = 2222 bits (1203), Expect = 0.0 Identities = 1333/1394 (96%), Gaps = 15/1394 (1%) Strand=Plus/Plus Query 73 AATGGCTCTATCACGCCTCTCATCACGATCCAACATCATCACTCGTCCCTTCTCCGCCGC 132 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 48 AATGGCTCTATCACGCCTCACATCACGATCCAACATCATCACTCGTCCCTTCTCCGCCGC 107 Query 133 CTTCAGCCGATTAATCTCAACGGACACAACTCCGATCACAATCGAGACTTCGCTTCCTTT 192 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 108 CTTCAGCCGATTGCTCTCAACGGACACAACTCCGATCACAATCGAGACTTCGCTTCCTTT 167 Query 193 CACAGCTCACTTATGTGATCCACCGTCACGCTCCGTCGAATCATCGAGTCAAGAGCTTCT 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 168 CACAGCTCACTTATGTGATCCACCGTCACGCTCCGTCGAATCATCGAGTCAAGAGCTTCT 227 Query 253 CGATTTCTTCAGAACCATGGCGTTGATGCGACGTATGGAAATCGCAGCCGATTCGCTTTA 312 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 228 CGATTTCTTCCGAACCATGGCGTTGATGCGACGTATGGAAATCGCAGCCGATTCGCTTTA 287 Query 313 CAAAGCGAAGCTAATCCGAGGGTTTTGTCATCTCTACGACGGCCAAGAAGCTGTAGCTAT 372 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 288 CAAAGCGAAGCTAATCCGAGGGTTTTGCCATCTCTACGACGGCCAAGAAGCTGTAGCTAT 347 Query 373 AGGCATGGAAGCTGCGATTACAAAGAAAGACGCGATTATTACTGCTTATCGTGATCACTG 432 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 348 AGGCATGGAAGCTGCGATTACAAAGAAAGACGCGATCATTACTGCTTATCGAGATCACTG 407 Query 433 TATTTTCTTAGGTCGTGGTGGTTCGCTTCATGAGGTTTTCTCAGAGCTTATGGGAAGACA 492 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 408 TATTTTCTTAGGTCGTGGTGGTTCGCTTCATGAGATTTTCTCAGAGCTTATGGGAAGACA 467 Query 493 AGCTGGTTGTTCTAAAGGGAAAGGTGGATCTATGCACTTCTATAAGAAGGAATCGTCGTT 552 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 468 AGCTGGTTGTTCTAAAGGGAAAGGTGGATCTATGCATTTCTATAAGAAGGAATCGTCGTT 527 Query 553 TTACGGTGGTCATGGGATTGTTGGTGCTCAGGTTCCATTAGGTTGTGGTATTGCTTTTGC 612 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 528 TTATGGTGGTCATGGGATTGTTGGTGCTCAGGTTCCATTAGGTTGTGGTATTGCTTTTGC 587 Query 613 TCAGAAGTATAACAAGGAAGAGGCTGTCACATTTGCTTTGTATGGTGATGGTGCTGCGAA 672 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 588 TCAGAAGTATAATAAGGAAGAGGCTGTGACATTTGCTTTGTATGGTGATGGTGCTGCGAA 647 Query 673 TCAGGGACAGTTGTTTGAAGCTTTGAATATTTCTGCTCTTTGGGATTTGCCTGCAATTTT 732 ||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| Sbjct 648 TCAAGGACAGTTGTTTGAAGCTTTGAATATATCTGCTCTTTGGGATTTACCTGCTATTTT 707 Query 733 GGTCTGCGAGAACAATCACTATGGAATGGGAACTGCTGAATGGAGAGCCGCTAAGAGTCC 792 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 708 GGTCTGCGAGAACAATCACTATGGAATGGGAACTGCTGAATGGAGAGCCTCTAAGAGTTC 767 Query 793 ATCTTACTACAAGCGTGGTGATTATGTTCCTGGACTCAAGGTAGATGGTATGGATGCATT 852 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 768 ATCTTACTACAAGCGTGGTGATTATGTTCCTGGACTCAAGGTAGATGGTATGGATGCATT 827 Query 853 TGCTGTCAAACAAGCTTGCAAATTTGCTAAGCAGCATGCGTTGGAGAAGGGGCCAATAAT 912 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 828 TGCTGTCAAACAAGCTTGCAAATTTGCTAAGCAGCATGCGTTGGAGAAGGGACCAATAAT 887 Query 913 TCTTGAGATGGACACATACAGGTACCACGGTCACTCCATGTCTGATCCTGGGAGCACATA 972 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 888 TCTTGAGATGGACACATACAGGTACCACGGTCACTCCATGTCTGATCCTGGGAGCACATA 947 Query 973 CCGTACCCGAGATGAGATATCTGGTGTGAGGCAGGAACGGGATCCAATTGAGAGAATAAA 1032 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 948 CCGTACACGAGATGAGATATCTGGTGTGAGGCAGGAACGGGATCCAATTGAGAGAATAAA 1007 Query 1033 GAAGCTGGTACTATCTCATGACCTAGCAACCGAGAAAGAGCTTAAGGATATGGAGAAGGA 1092 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1008 AAAGTTGGTACTATCTCATGACCTAGCAACCGAGAAAGAGCTTAAGGATATGGAGAAGGA 1067 Query 1093 AATTAGAAAAGAAGTAGATGACGCCATTGCCAAAGCTAAGGATTGCCCAATGCCAGAGCC 1152 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1068 AATTAGAAAAGAAGTAGATGACGCCATTGCCAAAGCTAAGGATTGCCCAATGCCAGAGCC 1127 Query 1153 TTCTGAGCTCTTTACCAATGTGTATGTGAAGGGATTTGGCACCGAGTCATTTGGACCTGA 1212 ||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 1128 TTCTGAGCTTTTTACCAATGTGTATGTGAAAGGATATGGCACCGAGTCATTTGGACCTGA 1187 Query 1213 CAGAAAAGAAGTCAAAGCTTCCCTTCCATGATCATGGAGCTCTTGTTCGTTAAACTGCCA 1272 ||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||| Sbjct 1188 CAGAAAAGAAGTCAAAGCTTCGCTTCCATGATCATGAAGCGATTGTTCGTTAAACTGCCA 1247 Query 1273 CGTGTCATGAGAAAGTTGGCTGAT-AGAGAAATCTATGAATATGAATAAAGATCTGATTG 1331 |||||||||||| ||| ||||||| | || || ||||||||| || ||||| |||| Sbjct 1248 CGTGTCATGAGACAGTCGGCTGATGATAGGAAGCTATGAATA--AA----GATCTTATTG 1301 Query 1332 TATACTCT--CTCTCTccc-c-c-cc-cTTCTGAACTTTAATCTCTCTGTATCTTTGTTT 1385 |||||| | ||||||| | | || ||||||| |||||||||||||||||||| ||| Sbjct 1302 TATACTATTACTCTCTCTGTCTCTCCTCTTCTGAGTTTTAATCTCTCTGTATCTTTCTTT 1361 Query 1386 ACAAACATAAGGAGAAACAATGTTATTCTTGTGAAGCTTTAGT-AGTCTCGTGTTTAATA 1444 | | ||||||||||||||| ||||||| |||||||||||| || |||||||||||||||| Sbjct 1362 ATATACATAAGGAGAAACA-TGTTATTATTGTGAAGCTTTTGTCAGTCTCGTGTTTAATA 1420 Query 1445 TTCAAGCAATCGAG 1458 |||||||||| ||| Sbjct 1421 TTCAAGCAATTGAG 1434 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54926133290 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5