BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60070.2
Length=3268
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475305 jgi|Araly1|475305|fgenesh2_kg.2__435__AT1G60070.1 4189 0.0
> Ahg475305 jgi|Araly1|475305|fgenesh2_kg.2__435__AT1G60070.1
Length=2990
Score = 4189 bits (2268), Expect = 0.0
Identities = 2506/2620 (96%), Gaps = 19/2620 (1%)
Strand=Plus/Plus
Query 18 TTTTCCGTTTTCTTTCAGGGAAGAGaaaaaaaaaaCACAGACCTCTCT-TTTCTCTCTTC 76
||||||||||||||| || ||||||||||||||||||||||| ||||| ||||| | |||
Sbjct 1 TTTTCCGTTTTCTTTTAGTGAAGAGAAAAAAAAAACACAGACGTCTCTCTTTCTTTGTTC 60
Query 77 --ATGTTTTCATCGATAGTGGAAGAGATCAAGTGAAAG--AAAAACACTCAGATCTGGAA 132
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 61 ATATGTTTTCATCGATAGTGGAAGAGATCAAGTGAAAGAAAAAAACTCTCAGATCTGGAA 120
Query 133 ATTCAGCTTCTTAGATCTATGAATT-TTCAAATTCGTTGATCCATTTT-TC-CGCTTCAA 189
||| ||||||||||||||||| ||| ||||||| |||||||||||||| || ||| | ||
Sbjct 121 ATTGAGCTTCTTAGATCTATG-ATTCTTCAAATCCGTTGATCCATTTTCTCGCGC-T-AA 177
Query 190 TCGTCTCCGATCTGATTTCATCAGCTTCGTACCGCTCCGGTCATGAATCCATTCTCTTCC 249
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 178 TCGTCTCCGATCTGATTTCATCAGCTTCGTACCGCTCCGATCATGAATCCGTTCTCTTCC 237
Query 250 GGCACGCGTCTCAGCGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAA 309
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 238 GGCACGCGTCTCAGCGACATGATTCGGGCTATACGTGCGAGTAAAACCGCTGCTGAGGAA 297
Query 310 CGTGCTGTTGTGAGGAAAGAATGTGCTGCGATCCGTGCTTCGATTAATGAAAATGACCAG 369
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 298 CGGGCTGTTGTGAGGAAAGAGTGTGCTGCGATCCGTGCTTCGATTAATGAAAATGACCAG 357
Query 370 GACTATAGACATCGGGATCTAGCGAAGCTTATGTTCATTCATATGCTTGGTTA-CCCTAC 428
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||
Sbjct 358 GACTATAGACACCGGGATCTAGCAAAGCTTATGTTCATTCATATGCTTGGTTATCCC-AC 416
Query 429 TCATTTTGGGCAAATGGAATGCTTGAAGTTAATTGCTTCTCCTGGATTTCCTGAGAAGAG 488
||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 417 ACATTTTGGGCAGATGGAATGTTTGAAGTTAATTGCTTCTCCTGGATTTCCAGAGAAGAG 476
Query 489 GATTGGTTATCTTGGATTAATGTTGCTTCTTGATGAAAGGCAAGAAGTATTAATGCTTGT 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 477 GATTGGTTATCTTGGATTAATGTTGCTTCTTGATGAAAGGCAAGAAGTATTAATGCTGGT 536
Query 549 CACCAACTCGCTGAAGCAAGATCTGAATCACACGAACCAGTACATTGTGGGGCTTGCTCT 608
||| |||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 537 CACTAACTCGTTGAAGCAAGATCTGAATCATACGAACCAATACATTGTGGGGCTTGCTCT 596
Query 609 CTGTGCTTTAGGAAATATTTGTTCAGCAGAAATGGCTCGTGATCTCGCCCCTGAAGTTGA 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CTGTGCTTTAGGAAATATTTGTTCAGCAGAAATGGCTCGTGATCTCGCCCCTGAAGTTGA 656
Query 669 ACGATTACTTCAGTTTCGTGATCCAAATATACGCAAGAAAGCAGCTCTTTGCGCGATAAG 728
| |||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 657 AAGATTACTTCAATTTCGGGATCCAAATATACGCAAGAAAGCAGCTCTTTGCGCCATAAG 716
Query 729 GATCATCAGAAAAGTTCCGGATCTTTCTGAGAACTTTATTAATCCTGGTGCTGCTTTACT 788
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 717 GATCATCAGAAAAGTTCCGGATCTTTCTGAGAACTTTATTAATCCTAGTGCTGCTTTACT 776
Query 789 CAAAGAAAAGCATCATGGTGTTCTCATTACGGGAGTTCACCTTTGCACAGAAATCTGTAA 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CAAAGAAAAGCATCATGGTGTTCTCATTACGGGAGTTCACCTTTGCACAGAAATCTGTAA 836
Query 849 AGTCAGTTCCGAAGCCCTTGAATATTTCCGGAAGAAATGCACAGAGGGCTTGGTTAAAAC 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AGTCAGTTCCGAAGCCCTTGAATATTTCCGGAAGAAATGCACAGAGGGCTTGGTTAAAAC 896
Query 909 CCTGAGAGATATTGCAAACAGTCCATATTCACCTGAGTATGACGTCGCTGGAATTACGGA 968
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CCTAAGAGATATTGCAAACAGTCCATATTCACCTGAGTATGACGTCGCTGGAATTACGGA 956
Query 969 TCCATTCCTTCACATCAGATTGCTCAAACTGTTGCGTGTTTTGGGCCAAGGGGATGCAGA 1028
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 957 TCCATTTCTTCACATCAGATTGCTCAAACTGTTGCGTGTTTTGGGCCAAGGCGATGCAGA 1016
Query 1029 TGCCAGTGACTGTATGAATGATATACTTGCTCAGGTGGCATCAAAAACCGAGTCAAACAA 1088
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GGCCAGTGACTGTATGAATGATATACTTGCTCAGGTGGCATCAAAAACCGAGTCAAACAA 1076
Query 1089 AAATGCAGGGAATGCTATCCTATACGAATGCGTTCAAACGATAATGAGCATCGAAGAAAA 1148
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1077 AAATGCAGGCAATGCTATCCTATACGAATGTGTTCAAACGATAATGAGCATCGAAGAAAA 1136
Query 1149 TGGTGGCCTACGAGTCCTTGCAATCAATATCTTAGGAAAATTCTTGTCCAACCGAGATAA 1208
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1137 TGGTGGTTTACGAGTCCTTGCAATCAATATCTTGGGAAAATTCTTGTCCAACCGAGATAA 1196
Query 1209 TAACATCAGATACGTAGCATTAAACATGCTGATGAGATCCTTAACTGTTGATTCCCAAGC 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TAACATCAGATACGTAGCATTAAACATGCTGATGAGATCCTTAACTGTTGATTCCCAAGC 1256
Query 1269 GGTTCAAAGACACAGAGCTACAATCCTGGAGTGTGTTAAGGATTCAGATGCTTCAATTCA 1328
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GGTTCAGAGGCACAGAGCTACAATCCTGGAGTGTGTTAAGGATTCAGATGCTTCAATTCA 1316
Query 1329 GAAAAGGGCACTTGAGCTTATTTACCTTCTAGTGAATGAGAATAACGTGAAGCCACTAGC 1388
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1317 GAAAAGGGCACTTGAGCTTATTTACCTTCTGGTGAATGAGAATAACGTGAAGCCACTAGC 1376
Query 1389 AAAGGAGCTTATAGAATATTTGGAAGTAAGCGAACAAGATTTTAAAGGAGATCTTACTGC 1448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 AAAGGAGCTTATAGAATATTTGGAAGTAAGCGAACAAGATTTTAAAGGAGATCTTACTGC 1436
Query 1449 AAAGATATGCTCCATAGTTGAAAAGTTTGCTCCAGAGAAAATCTGGTACATTGATCAAAT 1508
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 AAAGATATGCTCCATTGTTGAAAAGTTTGCTCCAGAGAAAATCTGGTACATTGATCAAAT 1496
Query 1509 GCTAAAGGTTCTATCTGAGGCTGGAACTTATGTGAAAGAGGATGTATGGCACGCGCTGAT 1568
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1497 GCTAAAGGTTCTATCGGAGGCTGGAACTTATGTGAAAGAGGATGTATGGCACGCACTGAT 1556
Query 1569 TGTTGTAATAACAAATGCCCCTGATCTCCATGGGTACACTGTCAGGGCTTTGTATAGAGC 1628
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1557 TGTTGTAATAACAAATGCCCCTGATCTCCATGGGTACACTGTCAGGGCTTTGTACAGAGC 1616
Query 1629 ATTACATACATCTTTTGAACAGGAAACTCTTGTGCGCGTTGCAATATGGTGCATAGGAGA 1688
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1617 ATTACATACATCTTTTGAACAGGAAACGCTTGTGCGCGTTGCAATATGGTGCATAGGAGA 1676
Query 1689 ATATGCTGATCTGTTGGTTAACAATGCTGGAATGCTTGACTTAGAAGATCCAATAACGGT 1748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 ATATGCTGATCTGTTGGTTAACAATGCTGGAATGCTTGACTTAGAAGATCCAATAACGGT 1736
Query 1749 AACAGAATCAGATGCAGTGGATGTTGTCGAGAATGCTATTAAGCATCATTTATCAGATGT 1808
|||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||
Sbjct 1737 AACAGAATCAGATGCAGTGGATGTTGTCGAGACTGCTATTAAGCATCATACATCGGATGT 1796
Query 1809 CACAACTAAGGCAATGGCACTCATTGCTCTGTTAAAGATCTCATCTCGTTTCCCATCCTG 1868
||| |||||||||||| |||||||||||||||||||||||||||| |||||||| || ||
Sbjct 1797 CACGACTAAGGCAATGTCACTCATTGCTCTGTTAAAGATCTCATCCCGTTTCCCTTCTTG 1856
Query 1869 TTCAGAGAGAGTTAAAAGTATTATAGGACAGAACAAAGGTAGCTTTGTCTTAGAACTTCA 1928
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1857 TTCAGAGAGGGTTAAAAGTATTATAGGGCAGAACAAAGGTAGCTTTGTCTTAGAACTGCA 1916
Query 1929 ACAAAGATCCCTGGAGTTCAGTTCAGTTATTCAAAAGCATCAGAATATAAGATCTTCTCT 1988
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1917 ACAAAGATCCCTGGAATTCAGTTCAGTTATTCAAAAGCATCAGAATATAAGATCTGCCCT 1976
Query 1989 GGTTGAAAGAATGCCGGTCCTTGATGAGGCAACATTTAGTGGAAGGAGAGCTGGTTCTTT 2048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1977 GGTTGAAAGAATGCCGGTCCTTGATGAGGCAACATTTAGTGGAAGGAGAGCTGGTTCTTT 2036
Query 2049 ACCAGCATCTGTGTCAACTTCTGGAAAATCTCCGCTTGGTATTCCAAACGGTGTTGCTAA 2108
||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 2037 ACCAGCAGCTGTGTCAACTTCTGGAAAATCTCCGCTTAGCATTCCAAACGGTGTTGCTAA 2096
Query 2109 AGCAGC---AGCTCCTCTTGTTGATTTACTCGATCTGGGCTCTGATGATACTCCTGCGCC 2165
||| || ||||||||| || ||||||||||| || |||||||||||||||||||| ||
Sbjct 2097 AGCTGCTCCAGCTCCTCTAGTAGATTTACTCGACCTTGGCTCTGATGATACTCCTGCACC 2156
Query 2166 TACCTCCTCCAGTAACAACTTTCTTCAAGATCTTCTTGGTGTTGATTTATCGCAGCCTTC 2225
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2157 TACCTCCTCCAGTAACAACTTTCTTCAAGATCTTCTTGGTGTTGATTTAACGCAGCCTTC 2216
Query 2226 AGCACAACCTGGTGCCATGCAGCCATCGCAAGCTGGTGCGGATATTCTTATGGATCTGTT 2285
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 2217 AGCACAACCTGGTGCCATGCAGCCATCTAAAGCTGGCGCGGATATTCTTATGGATCTGTT 2276
Query 2286 GTCAATCGGAACTCCTGCCCCTGTGCAAAATGGCTCGGCGAATGGAGACTTATTATCTAT 2345
|||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 2277 GTCAATTGGAACTCCTGCCCCTGTGCAAAATGGCTCGTCGAATGGAGACTTGTTATCTAT 2336
Query 2346 TCAAGATAACAATGCTCCAATAGCGCCTTCTTTGACTTCTCCCACTGCGCCTTCTTCGAT 2405
|||||||||||||||||||||||| | | | | || | | ||||||||||||||||
Sbjct 2337 TCAAGATAACAATGCTCCAATAGC-C-TCCAT-GAATACAATTTCTGCGCCTTCTTCGAT 2393
Query 2406 GATGGATTTATTGGATGGATTTGGTCCCACCCCACCAAAGAGCGAGGACAAGAGTGCAGC 2465
||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 2394 GATGGATCTATTGGATGGATTTGGTCCCACCCCACCAAAGAGTGAGGACAAGGGTGCAGC 2453
Query 2466 ATATCCGTCCATTGTTGCATTTGAAAGCAGCTCCTTGAAGATTGAGTTCAACTTCACAAA 2525
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 2454 ATATCCGTCCATTGTTGCATTTGAGAGTAGCTCCTTGAAGATTGAGTTCAACTTCACTAA 2513
Query 2526 GCAATCAGAAAATCCTCAAACGACAGACATTGTGGCCAATTTCATAAATCTTACTCCTAA 2585
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 2514 GCAATCAGAAAATCCTCAAACTATAGACATTGTGGCCAATTTCATAAATCTTACTCCTAA 2573
Query 2586 CGTGTACACAGAATTTCTTTTCCAGGCTGCAGTTCCAAAG 2625
|||||||||||| |||||||||||||||||||||||||||
Sbjct 2574 CGTGTACACAGATTTTCTTTTCCAGGCTGCAGTTCCAAAG 2613
Score = 503 bits (272), Expect = 4e-141
Identities = 333/361 (92%), Gaps = 10/361 (3%)
Strand=Plus/Plus
Query 2734 TTTCTACAACTTCACCTGGATCCCGCTAGCAGCAATTCTCTTCCAGCTAACGGAAACATC 2793
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 2614 TTTCTACAACTTCACCTGGATCCCGCTAGCAGCAACTCTCTTCCAGCCAACGGAAACATC 2673
Query 2794 AAACAAACTATGAGAGTTACAAATAGCCAAAAGGGGAAGAAACCCATTGTGATGCGGATG 2853
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2674 AAACAAACTATGAGAGTTACAAATAGCCAACAGGGGAAGAAACCCATTGTGATGCGGATG 2733
Query 2854 AGGGTAGGTTACAAGATTAATGGCAAAGATGTGTTGGAGGAAGGACAAATCAACAATTTC 2913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2734 AGGGTAGGTTACAAGATTAATGGCAAAGATGTGTTGGAGGAAGGACAAATCAACAATTTC 2793
Query 2914 CCACGTGGGTTATGAGAACGTTTCAGGTATTCCAAGATTCATATACATATTCCTAATTTA 2973
|||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||| |
Sbjct 2794 CCACGTGGTTTATGAGAACTTTTCAGGTATCCCAAGATTCATATACATATTCCTAATTCA 2853
Query 2974 -TATA-ATCACTTCCCATAGACTAAAACAAACTTCTTCATAGAACCTTT-GTATGTGTGA 3030
|||| || | | | ||| || | || ||||||||||||| ||| || |||||||
Sbjct 2854 ATATATATAA-T-CACATCC-CTTAGAC----TTCTTCATAGAACGTTTTGTGTGTGTGA 2906
Query 3031 TTCGTTGGCTTTGTGTGAAATCTGGGTTTAAAGTGAGATAACTTTTTGATGGTCTGAGTT 3090
||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||
Sbjct 2907 TTCGTTGGCTTTGTGTGAAATCTGGGTTTAAAGAGAGATAACTTTTTGATAGTTTGAGTT 2966
Query 3091 A 3091
|
Sbjct 2967 A 2967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123344594093
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5