BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G60070.2 Length=3268 Score E Sequences producing significant alignments: (Bits) Value Ahg475305 jgi|Araly1|475305|fgenesh2_kg.2__435__AT1G60070.1 4189 0.0 > Ahg475305 jgi|Araly1|475305|fgenesh2_kg.2__435__AT1G60070.1 Length=2990 Score = 4189 bits (2268), Expect = 0.0 Identities = 2506/2620 (96%), Gaps = 19/2620 (1%) Strand=Plus/Plus Query 18 TTTTCCGTTTTCTTTCAGGGAAGAGaaaaaaaaaaCACAGACCTCTCT-TTTCTCTCTTC 76 ||||||||||||||| || ||||||||||||||||||||||| ||||| ||||| | ||| Sbjct 1 TTTTCCGTTTTCTTTTAGTGAAGAGAAAAAAAAAACACAGACGTCTCTCTTTCTTTGTTC 60 Query 77 --ATGTTTTCATCGATAGTGGAAGAGATCAAGTGAAAG--AAAAACACTCAGATCTGGAA 132 |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 61 ATATGTTTTCATCGATAGTGGAAGAGATCAAGTGAAAGAAAAAAACTCTCAGATCTGGAA 120 Query 133 ATTCAGCTTCTTAGATCTATGAATT-TTCAAATTCGTTGATCCATTTT-TC-CGCTTCAA 189 ||| ||||||||||||||||| ||| ||||||| |||||||||||||| || ||| | || Sbjct 121 ATTGAGCTTCTTAGATCTATG-ATTCTTCAAATCCGTTGATCCATTTTCTCGCGC-T-AA 177 Query 190 TCGTCTCCGATCTGATTTCATCAGCTTCGTACCGCTCCGGTCATGAATCCATTCTCTTCC 249 ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| Sbjct 178 TCGTCTCCGATCTGATTTCATCAGCTTCGTACCGCTCCGATCATGAATCCGTTCTCTTCC 237 Query 250 GGCACGCGTCTCAGCGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAA 309 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 238 GGCACGCGTCTCAGCGACATGATTCGGGCTATACGTGCGAGTAAAACCGCTGCTGAGGAA 297 Query 310 CGTGCTGTTGTGAGGAAAGAATGTGCTGCGATCCGTGCTTCGATTAATGAAAATGACCAG 369 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 298 CGGGCTGTTGTGAGGAAAGAGTGTGCTGCGATCCGTGCTTCGATTAATGAAAATGACCAG 357 Query 370 GACTATAGACATCGGGATCTAGCGAAGCTTATGTTCATTCATATGCTTGGTTA-CCCTAC 428 ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| || Sbjct 358 GACTATAGACACCGGGATCTAGCAAAGCTTATGTTCATTCATATGCTTGGTTATCCC-AC 416 Query 429 TCATTTTGGGCAAATGGAATGCTTGAAGTTAATTGCTTCTCCTGGATTTCCTGAGAAGAG 488 ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 417 ACATTTTGGGCAGATGGAATGTTTGAAGTTAATTGCTTCTCCTGGATTTCCAGAGAAGAG 476 Query 489 GATTGGTTATCTTGGATTAATGTTGCTTCTTGATGAAAGGCAAGAAGTATTAATGCTTGT 548 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 477 GATTGGTTATCTTGGATTAATGTTGCTTCTTGATGAAAGGCAAGAAGTATTAATGCTGGT 536 Query 549 CACCAACTCGCTGAAGCAAGATCTGAATCACACGAACCAGTACATTGTGGGGCTTGCTCT 608 ||| |||||| ||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 537 CACTAACTCGTTGAAGCAAGATCTGAATCATACGAACCAATACATTGTGGGGCTTGCTCT 596 Query 609 CTGTGCTTTAGGAAATATTTGTTCAGCAGAAATGGCTCGTGATCTCGCCCCTGAAGTTGA 668 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 597 CTGTGCTTTAGGAAATATTTGTTCAGCAGAAATGGCTCGTGATCTCGCCCCTGAAGTTGA 656 Query 669 ACGATTACTTCAGTTTCGTGATCCAAATATACGCAAGAAAGCAGCTCTTTGCGCGATAAG 728 | |||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 657 AAGATTACTTCAATTTCGGGATCCAAATATACGCAAGAAAGCAGCTCTTTGCGCCATAAG 716 Query 729 GATCATCAGAAAAGTTCCGGATCTTTCTGAGAACTTTATTAATCCTGGTGCTGCTTTACT 788 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 717 GATCATCAGAAAAGTTCCGGATCTTTCTGAGAACTTTATTAATCCTAGTGCTGCTTTACT 776 Query 789 CAAAGAAAAGCATCATGGTGTTCTCATTACGGGAGTTCACCTTTGCACAGAAATCTGTAA 848 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 CAAAGAAAAGCATCATGGTGTTCTCATTACGGGAGTTCACCTTTGCACAGAAATCTGTAA 836 Query 849 AGTCAGTTCCGAAGCCCTTGAATATTTCCGGAAGAAATGCACAGAGGGCTTGGTTAAAAC 908 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 837 AGTCAGTTCCGAAGCCCTTGAATATTTCCGGAAGAAATGCACAGAGGGCTTGGTTAAAAC 896 Query 909 CCTGAGAGATATTGCAAACAGTCCATATTCACCTGAGTATGACGTCGCTGGAATTACGGA 968 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 897 CCTAAGAGATATTGCAAACAGTCCATATTCACCTGAGTATGACGTCGCTGGAATTACGGA 956 Query 969 TCCATTCCTTCACATCAGATTGCTCAAACTGTTGCGTGTTTTGGGCCAAGGGGATGCAGA 1028 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 957 TCCATTTCTTCACATCAGATTGCTCAAACTGTTGCGTGTTTTGGGCCAAGGCGATGCAGA 1016 Query 1029 TGCCAGTGACTGTATGAATGATATACTTGCTCAGGTGGCATCAAAAACCGAGTCAAACAA 1088 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1017 GGCCAGTGACTGTATGAATGATATACTTGCTCAGGTGGCATCAAAAACCGAGTCAAACAA 1076 Query 1089 AAATGCAGGGAATGCTATCCTATACGAATGCGTTCAAACGATAATGAGCATCGAAGAAAA 1148 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1077 AAATGCAGGCAATGCTATCCTATACGAATGTGTTCAAACGATAATGAGCATCGAAGAAAA 1136 Query 1149 TGGTGGCCTACGAGTCCTTGCAATCAATATCTTAGGAAAATTCTTGTCCAACCGAGATAA 1208 |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1137 TGGTGGTTTACGAGTCCTTGCAATCAATATCTTGGGAAAATTCTTGTCCAACCGAGATAA 1196 Query 1209 TAACATCAGATACGTAGCATTAAACATGCTGATGAGATCCTTAACTGTTGATTCCCAAGC 1268 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1197 TAACATCAGATACGTAGCATTAAACATGCTGATGAGATCCTTAACTGTTGATTCCCAAGC 1256 Query 1269 GGTTCAAAGACACAGAGCTACAATCCTGGAGTGTGTTAAGGATTCAGATGCTTCAATTCA 1328 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1257 GGTTCAGAGGCACAGAGCTACAATCCTGGAGTGTGTTAAGGATTCAGATGCTTCAATTCA 1316 Query 1329 GAAAAGGGCACTTGAGCTTATTTACCTTCTAGTGAATGAGAATAACGTGAAGCCACTAGC 1388 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1317 GAAAAGGGCACTTGAGCTTATTTACCTTCTGGTGAATGAGAATAACGTGAAGCCACTAGC 1376 Query 1389 AAAGGAGCTTATAGAATATTTGGAAGTAAGCGAACAAGATTTTAAAGGAGATCTTACTGC 1448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1377 AAAGGAGCTTATAGAATATTTGGAAGTAAGCGAACAAGATTTTAAAGGAGATCTTACTGC 1436 Query 1449 AAAGATATGCTCCATAGTTGAAAAGTTTGCTCCAGAGAAAATCTGGTACATTGATCAAAT 1508 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1437 AAAGATATGCTCCATTGTTGAAAAGTTTGCTCCAGAGAAAATCTGGTACATTGATCAAAT 1496 Query 1509 GCTAAAGGTTCTATCTGAGGCTGGAACTTATGTGAAAGAGGATGTATGGCACGCGCTGAT 1568 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1497 GCTAAAGGTTCTATCGGAGGCTGGAACTTATGTGAAAGAGGATGTATGGCACGCACTGAT 1556 Query 1569 TGTTGTAATAACAAATGCCCCTGATCTCCATGGGTACACTGTCAGGGCTTTGTATAGAGC 1628 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1557 TGTTGTAATAACAAATGCCCCTGATCTCCATGGGTACACTGTCAGGGCTTTGTACAGAGC 1616 Query 1629 ATTACATACATCTTTTGAACAGGAAACTCTTGTGCGCGTTGCAATATGGTGCATAGGAGA 1688 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1617 ATTACATACATCTTTTGAACAGGAAACGCTTGTGCGCGTTGCAATATGGTGCATAGGAGA 1676 Query 1689 ATATGCTGATCTGTTGGTTAACAATGCTGGAATGCTTGACTTAGAAGATCCAATAACGGT 1748 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1677 ATATGCTGATCTGTTGGTTAACAATGCTGGAATGCTTGACTTAGAAGATCCAATAACGGT 1736 Query 1749 AACAGAATCAGATGCAGTGGATGTTGTCGAGAATGCTATTAAGCATCATTTATCAGATGT 1808 |||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| Sbjct 1737 AACAGAATCAGATGCAGTGGATGTTGTCGAGACTGCTATTAAGCATCATACATCGGATGT 1796 Query 1809 CACAACTAAGGCAATGGCACTCATTGCTCTGTTAAAGATCTCATCTCGTTTCCCATCCTG 1868 ||| |||||||||||| |||||||||||||||||||||||||||| |||||||| || || Sbjct 1797 CACGACTAAGGCAATGTCACTCATTGCTCTGTTAAAGATCTCATCCCGTTTCCCTTCTTG 1856 Query 1869 TTCAGAGAGAGTTAAAAGTATTATAGGACAGAACAAAGGTAGCTTTGTCTTAGAACTTCA 1928 ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 1857 TTCAGAGAGGGTTAAAAGTATTATAGGGCAGAACAAAGGTAGCTTTGTCTTAGAACTGCA 1916 Query 1929 ACAAAGATCCCTGGAGTTCAGTTCAGTTATTCAAAAGCATCAGAATATAAGATCTTCTCT 1988 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | || Sbjct 1917 ACAAAGATCCCTGGAATTCAGTTCAGTTATTCAAAAGCATCAGAATATAAGATCTGCCCT 1976 Query 1989 GGTTGAAAGAATGCCGGTCCTTGATGAGGCAACATTTAGTGGAAGGAGAGCTGGTTCTTT 2048 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1977 GGTTGAAAGAATGCCGGTCCTTGATGAGGCAACATTTAGTGGAAGGAGAGCTGGTTCTTT 2036 Query 2049 ACCAGCATCTGTGTCAACTTCTGGAAAATCTCCGCTTGGTATTCCAAACGGTGTTGCTAA 2108 ||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 2037 ACCAGCAGCTGTGTCAACTTCTGGAAAATCTCCGCTTAGCATTCCAAACGGTGTTGCTAA 2096 Query 2109 AGCAGC---AGCTCCTCTTGTTGATTTACTCGATCTGGGCTCTGATGATACTCCTGCGCC 2165 ||| || ||||||||| || ||||||||||| || |||||||||||||||||||| || Sbjct 2097 AGCTGCTCCAGCTCCTCTAGTAGATTTACTCGACCTTGGCTCTGATGATACTCCTGCACC 2156 Query 2166 TACCTCCTCCAGTAACAACTTTCTTCAAGATCTTCTTGGTGTTGATTTATCGCAGCCTTC 2225 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2157 TACCTCCTCCAGTAACAACTTTCTTCAAGATCTTCTTGGTGTTGATTTAACGCAGCCTTC 2216 Query 2226 AGCACAACCTGGTGCCATGCAGCCATCGCAAGCTGGTGCGGATATTCTTATGGATCTGTT 2285 ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 2217 AGCACAACCTGGTGCCATGCAGCCATCTAAAGCTGGCGCGGATATTCTTATGGATCTGTT 2276 Query 2286 GTCAATCGGAACTCCTGCCCCTGTGCAAAATGGCTCGGCGAATGGAGACTTATTATCTAT 2345 |||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 2277 GTCAATTGGAACTCCTGCCCCTGTGCAAAATGGCTCGTCGAATGGAGACTTGTTATCTAT 2336 Query 2346 TCAAGATAACAATGCTCCAATAGCGCCTTCTTTGACTTCTCCCACTGCGCCTTCTTCGAT 2405 |||||||||||||||||||||||| | | | | || | | |||||||||||||||| Sbjct 2337 TCAAGATAACAATGCTCCAATAGC-C-TCCAT-GAATACAATTTCTGCGCCTTCTTCGAT 2393 Query 2406 GATGGATTTATTGGATGGATTTGGTCCCACCCCACCAAAGAGCGAGGACAAGAGTGCAGC 2465 ||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||| Sbjct 2394 GATGGATCTATTGGATGGATTTGGTCCCACCCCACCAAAGAGTGAGGACAAGGGTGCAGC 2453 Query 2466 ATATCCGTCCATTGTTGCATTTGAAAGCAGCTCCTTGAAGATTGAGTTCAACTTCACAAA 2525 |||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || Sbjct 2454 ATATCCGTCCATTGTTGCATTTGAGAGTAGCTCCTTGAAGATTGAGTTCAACTTCACTAA 2513 Query 2526 GCAATCAGAAAATCCTCAAACGACAGACATTGTGGCCAATTTCATAAATCTTACTCCTAA 2585 ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 2514 GCAATCAGAAAATCCTCAAACTATAGACATTGTGGCCAATTTCATAAATCTTACTCCTAA 2573 Query 2586 CGTGTACACAGAATTTCTTTTCCAGGCTGCAGTTCCAAAG 2625 |||||||||||| ||||||||||||||||||||||||||| Sbjct 2574 CGTGTACACAGATTTTCTTTTCCAGGCTGCAGTTCCAAAG 2613 Score = 503 bits (272), Expect = 4e-141 Identities = 333/361 (92%), Gaps = 10/361 (3%) Strand=Plus/Plus Query 2734 TTTCTACAACTTCACCTGGATCCCGCTAGCAGCAATTCTCTTCCAGCTAACGGAAACATC 2793 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 2614 TTTCTACAACTTCACCTGGATCCCGCTAGCAGCAACTCTCTTCCAGCCAACGGAAACATC 2673 Query 2794 AAACAAACTATGAGAGTTACAAATAGCCAAAAGGGGAAGAAACCCATTGTGATGCGGATG 2853 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2674 AAACAAACTATGAGAGTTACAAATAGCCAACAGGGGAAGAAACCCATTGTGATGCGGATG 2733 Query 2854 AGGGTAGGTTACAAGATTAATGGCAAAGATGTGTTGGAGGAAGGACAAATCAACAATTTC 2913 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2734 AGGGTAGGTTACAAGATTAATGGCAAAGATGTGTTGGAGGAAGGACAAATCAACAATTTC 2793 Query 2914 CCACGTGGGTTATGAGAACGTTTCAGGTATTCCAAGATTCATATACATATTCCTAATTTA 2973 |||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||| | Sbjct 2794 CCACGTGGTTTATGAGAACTTTTCAGGTATCCCAAGATTCATATACATATTCCTAATTCA 2853 Query 2974 -TATA-ATCACTTCCCATAGACTAAAACAAACTTCTTCATAGAACCTTT-GTATGTGTGA 3030 |||| || | | | ||| || | || ||||||||||||| ||| || ||||||| Sbjct 2854 ATATATATAA-T-CACATCC-CTTAGAC----TTCTTCATAGAACGTTTTGTGTGTGTGA 2906 Query 3031 TTCGTTGGCTTTGTGTGAAATCTGGGTTTAAAGTGAGATAACTTTTTGATGGTCTGAGTT 3090 ||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||| Sbjct 2907 TTCGTTGGCTTTGTGTGAAATCTGGGTTTAAAGAGAGATAACTTTTTGATAGTTTGAGTT 2966 Query 3091 A 3091 | Sbjct 2967 A 2967 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 123344594093 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5