BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60080.1
Length=1441
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907461 jgi|Araly1|907461|Al_scaffold_0002_542 1408 0.0
> Ahg907461 jgi|Araly1|907461|Al_scaffold_0002_542
Length=909
Score = 1408 bits (762), Expect = 0.0
Identities = 863/912 (95%), Gaps = 6/912 (1%)
Strand=Plus/Plus
Query 158 ATGGGAATACCAGATGCAGCTCAAGACTTGTCGACAGAGATGGAAGTTGATGCTTTTAGA 217
||||| ||| |||| || ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGTTACAAGATTCATCTCAAGATTTGTCGACAGAGATGGAAGTTGATGCTTTTAGA 60
Query 218 AGAATCTTCCCTCTTCGTTTCTTTGAGCGTCATCTCTCTGAATCTCTTCGTCCTGATGGA 277
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 61 AGAATCTTCCCTCTTCGTTTCTTTGAGCGTCATCTCTCTGAATCACTTCGACCTGATGGT 120
Query 278 AGACAACTTGGAAAAGCTAGAGACACCATTGTTAATCTTGGACTTGTTTCAACTGCTGAT 337
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 AGACAACTTGGAAAAGCTAGAGACACCATTGTTAACCTTGGACTTGTTTCAACTGCTGAT 180
Query 338 GGGTCTGCTCTTGCTAAGATTGGTTCCACTACTATGCTTGCTGCTATTAGAATGGAAGTT 397
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 181 GGGTCTGCTCTTGCTAAGATTGGTTCTACGACTATGCTTGCTGCTATTAGAATGGAAGTT 240
Query 398 ATGACTCCTTCTACGGACTCTCCAGACGAAGGATGCATAGCTATTGAGTTCCATATGCCT 457
|||||||||||||| || || ||||||||||||||||||||| |||||||||| ||||||
Sbjct 241 ATGACTCCTTCTACTGATTCACCAGACGAAGGATGCATAGCTCTTGAGTTCCACATGCCT 300
Query 458 CCAATTTGTTCTCCGACTGTTCGTCCTGGAAGACCAGCCGAAGCTGCTCCCGTTATTTCA 517
|| |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 301 CCTATTTGTTCTCCGACTGTTCGTCCTGGTAGACCAGCTGACGCTGCTCCCGTTATTTCA 360
Query 518 AAGCGTTTGTCTGATACTATTTTAAGTTCTGGTATGATTGATCTTAAAGAACTGTGTCTA 577
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGCGTTTGTCTGATACAATTTTAAGTTCTGGTATGATTGATCTTAAAGAACTGTGTCTA 420
Query 578 GTTAGTGGAAAAGCTGCTTGGATGGGTTATCTGGACATATATTGCCTGGATGCTGATGGT 637
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 GTTAGTGGAAAAGCTGCTTGGATGGGTTATCTGGATATATATTGCCTGGATGCTGATGGT 480
Query 638 GCTCTCTTT-GATGCTGCTCTGCTTGCTGCTGTCGCAGCCTTCTCCAATCTGCAAATTCC 696
||||| ||| ||||||||||||||| ||||||| |||||||| || ||||||||||||||
Sbjct 481 GCTCT-TTTCGATGCTGCTCTGCTTTCTGCTGTTGCAGCCTTTTCGAATCTGCAAATTCC 539
Query 697 AATTGTTGCTCTGAATGACAATGGAAGAATAGTTGCCGTCACTGGAGAAAAAGATCAAGA 756
| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 540 AGTTGTTGCTCTGAATGACAATGGAAGAATAGTTGCCATCACTGGAGGAAAAGATCAAGA 599
Query 757 CAATGCTT-TGATCACCGAGAAAGAAGCAGTGAACAAGGAGAAGAGAAAACTTACGCTTA 815
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CAATGCTTCT-ATCACCGAGAAAGAAGCAGTGAACAAGGAGAAGAGAAAACTTACGCTTA 658
Query 816 AGAACATTCCTTTCTCTTTAACTTGCATACTTCACAAGAACT-ACATCTTAGCAGATCCA 874
| ||||| ||||||||||||||||||||||| ||||||| || |||||||||||||||||
Sbjct 659 AAAACATCCCTTTCTCTTTAACTTGCATACTCCACAAGA-CTTACATCTTAGCAGATCCA 717
Query 875 ACAACCGAAGAAGAATCGATCATGGACACTCTTGTGACTGTTGTTTTGGATTCCTCGGAT 934
|||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| |||
Sbjct 718 ACAACCGAAGAAGAATCGATCATGGACACTCTAGTGACTGTCGTTTTAGATTCCTCAGAT 777
Query 935 CAAATGGTTTCTTTCTACAAATCAGGAGGAGCTGCTCTCGCCTATTCATCAGCCATCAAG 994
|||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct 778 CAAATGGTTTCTTTCTACAAATCAGGAGGAACCGCTCTCGCATATTCATCAGCCATCAAG 837
Query 995 AGCTGTGTCGAGTTAGCAAGGAAGAGAGCAAAGGAGCTTAAGCAGATATTGGGAGAGATG 1054
||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||
Sbjct 838 AGCTGTGTCGAGTTAGCAAGGAAGAGAGCGAAGGAGGTTAAGCAGATATTGGGGGAGATG 897
Query 1055 GATATCGACTAA 1066
||||||||||||
Sbjct 898 GATATCGACTAA 909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53897696675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5