BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60190.1
Length=2276
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475300 jgi|Araly1|475300|fgenesh2_kg.2__430__AT1G60190.1 3120 0.0
Ahg935365 jgi|Araly1|935365|scaffold_403353.1 143 6e-33
> Ahg475300 jgi|Araly1|475300|fgenesh2_kg.2__430__AT1G60190.1
Length=2200
Score = 3120 bits (1689), Expect = 0.0
Identities = 2050/2222 (92%), Gaps = 34/2222 (2%)
Strand=Plus/Plus
Query 1 ATGATCCATACACCAACCGGGTCGAGTCGTCGGATTCTGACCTTTCCGGCGGTGAATCCA 60
||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATCCATACACAAACCGGCTCGAATCGTCGGATTCTGACCTTTCCGGCGGTGAATCCA 60
Query 61 TGCGAATCGATCTCTTTAACCACTCTCGTCGACTCACTTTTACAACTCGCCGGCGAGATT 120
|||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TGCGAATCGATCGCCATAACCACTCTCGTCGACTCACTATTACAACTCGCCGGCGAGATT 120
Query 121 CTTAGCTTCAAACCAAAACACTTCTCTACCAACAAAAGAAGTGTTAAAGAAACTCTCCGA 180
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 CTTACCTTCAAACCAAAAGACTTCTCTACCAACAAAAGAAGTGTTAAAGAAACTCTTCGA 180
Query 181 CATGTTCAAACTCTTGTGATCTTCTTTGAAGAGCTCCGGATTCAAATCCGAGTCGGGTCA 240
||| | ||| |||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct 181 CATATCCAATCTCTTGTGATCTTCTTCGAGGAGCTCCGGATTCAAATCCGGGTCGGGTCA 240
Query 241 ATAC-CGGCGGGTCGTTCGGTAATCTTGAGCCTTTCAGAGCTTCACGTCATCTTCCAGAA 299
|| | | ||||||||||| | |||||||||||| |||||||| || ||||||||||||||
Sbjct 241 AT-CTCAGCGGGTCGTTCAGCAATCTTGAGCCTATCAGAGCTCCATGTCATCTTCCAGAA 299
Query 300 ACTCAAGTTCCTACTAGACGACTGTACAAGAGATGGAGCTAAGCTATATATGTTAATGAA 359
|||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 300 ACTCAAGTTCCTTCTAGAAGACTGTACAAGAGAAGGAGCTAAGCTATATATGTTGATGAA 359
Query 360 CTCCGGTCAAGTCTCGGCTCATTTCCGGGATTTGACCCGATCCATATCCACTAGCCTCGA 419
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 360 CTCCGGTCAAGTCTCAGCTCATTTCCGGGCTTTGACCCGATCCATATCCACTAGCCTAGA 419
Query 420 CACGTTTCCAGTCAGG-TCTGTTGACTTACCTGGAGAAGTTAATGAGCTAATCTATCTAG 478
||||||||||||| || ||||||||||||||| ||||||| || ||| ||||||||||||
Sbjct 420 CACGTTTCCAGTC-GGCTCTGTTGACTTACCTAGAGAAGTCAACGAGTTAATCTATCTAG 478
Query 479 TAATGCGTCAGACTCGAAAATCCGAAGCAAGACCCGACCGAGACGACAAACGAGCTATAG 538
|||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 479 TAATGCGTCAGACTCGAAAATCCGAAGCAAGACCTGACCGAGACGACAAGCGGGCTATAG 538
Query 539 ACTCTGTTTATTGGTTCTTTAATCTGTTTGAGAACAGAATTAATCCGAATTCTGATGAAA 598
|||||||||||||||||||||||||||| |||||||||||||| ||||| || |||||||
Sbjct 539 ACTCTGTTTATTGGTTCTTTAATCTGTTCGAGAACAGAATTAACCCGAACTCGGATGAAA 598
Query 599 TACTCCGAGTTCTTGATCACATTGGTGTAAGAAAATGGAGAGATTGTGTCAAAGAGATCG 658
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 599 TACTCCGAGTTCTTGATCACATTGGTGTAAGAAAATGGAGAGATTGCGTCAACGAGATTG 658
Query 659 ATTTTTTACGAGAAGAGATCTCCGTGGGGAAGAAGAGTAACATCGAAATCGAGCTTCTCA 718
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 659 ATTTTATACGAGAAGAGATCTCCACCGGGAAGAAGAGTAACATCGAAATCGAGCTTCTCA 718
Query 719 GCAACTTAATGGGGTTCATATGTTACTGCAGATGTGTTATACTTCGAGGCATTGATGTTG 778
||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| |
Sbjct 719 GCAACTTAATGGGATTCATATGTTACTGTAGATGTGTGATACTTCGAGGCATTGATGTAG 778
Query 779 ATGATGAAGAGAAAGACAAGGAAGAAGATGATTTGATGATGGTTCGAAGTTTAAACGTTG 838
||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||||
Sbjct 779 ATGATGAAGAGAAAGACAAAGAAGAAGACGACATGATGATGATTCGAAGTTTAAACGTTG 838
Query 839 ATGATCTTCGTTGTCCGATTTCTCTAGAGATCATGAGTGATCCAGTGGTTTTAGAATCAG 898
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 839 ATGATCTTCGTTGTCCGATTTCTCTAGAGATCATGAGTGATCCAGTGGTTTTAGAAACAG 898
Query 899 GACACACTTATGATCGGAGCTCTATCACAAAGTGGTTCGCTTCCGGTAACATTACGTGCC 958
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 899 GACACACGTATGATCGGAGCTCTATCACAAAGTGGTTCGCTTCCGGTAACATCACGTGCC 958
Query 959 CTAAAACCGGTAAAACTTTGGTTAGTACTGTGTTGGTGGATAACTTCTCTGTCAAGCAAG 1018
|||| |||||||||||| |||| |||||| ||||||||||||||||||||||||||||||
Sbjct 959 CTAAGACCGGTAAAACTCTGGTAAGTACTATGTTGGTGGATAACTTCTCTGTCAAGCAAG 1018
Query 1019 TGATTCAAAGCTACTCCAAGCAAAACGGTGTAGTTATGGGTCAAAAGGGGAAGAAGAAGG 1078
||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1019 TGATTCAAAGCTACTGCAAGCAAAACTGTGTAGTTTTGGGTCAAAAGGGGAAGAAGAAGA 1078
Query 1079 TGGAT-GTGGCGGAGAGTTTAGCGGCGGAAGAAGCTGGAAAACTAACGGCGGAGTTTCTC 1137
| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1079 CG-ATTGTGGCGGAGAGTTTAGCGGCGGAAGAAGCCGGAAAACTAACCGCGGAGTTTCTC 1137
Query 1138 GCCGGAGAATTGATCAAGGGAGACGAAGAAGAGATGGTTAAAGCATTAGTGGAGATTCGA 1197
||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1138 GCCGGGGAATTGATCAACGGAGGTGAAGAAGAGATGGTTAAAGCATTAGTGGAGATTCGA 1197
Query 1198 ATTCTCACCAAGACGAGTACTTTTTACAGATCGTGTTTAGTGGAAGCTGGAGTTGTTGAA 1257
||||||||||| ||||||| ||||| |||||| ||||| ||||||||||| |||||||||
Sbjct 1198 ATTCTCACCAAAACGAGTAGTTTTTTCAGATCTTGTTTGGTGGAAGCTGGTGTTGTTGAA 1257
Query 1258 TCGTTGATGAAGATTCTTCGTTCGGATGATCCGAGGATCCAAGAGAAC-GCCATGGCTGG 1316
||||||||||||||||| || ||||| |||| |||| | ||||| ||| |||||||||||
Sbjct 1258 TCGTTGATGAAGATTCTGCGATCGGAAGATCAGAGGGTTCAAGA-AACCGCCATGGCTGG 1316
Query 1317 GATTATGAATTTATCGAAAGATATCGCCGGAAAAACTCGAATCGTCGGAGAAGACGGTGG 1376
||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||
Sbjct 1317 GATTATGAATTTATCGAAAGATATCACCGGGAAAACTCGAATCGCCGGAGAAGACGGTGG 1376
Query 1377 TGGATTAAGGCTAATCGTTGAGGTTTTAAACGATGGTGCGAGAAGAGAGAGCAGACAATA 1436
||||||||||||||||||||| ||||||||||| || || ||||||||||| ||||||||
Sbjct 1377 TGGATTAAGGCTAATCGTTGATGTTTTAAACGAAGGAGCTAGAAGAGAGAGTAGACAATA 1436
Query 1437 CGCAGCAGCTGCTCTGTTTTATCTATCTTCTC-TCGGAGATTACAGCAGATTGATCGGAG 1495
||||||||||||||||||||||| ||||| | |||||||||| || |||||||||||||
Sbjct 1437 TGCAGCAGCTGCTCTGTTTTATCTCTCTTC-CGTCGGAGATTATAGTAGATTGATCGGAG 1495
Query 1496 AAATCTCTGATGCGATTCCGGGATTGGTGAGAATCGTTAAAAGTTGCGATTACGGTGATT 1555
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 AAATCTCCGATTCGATTCCGGGATTGGTGAGAATCGTTAAAAGTTGCGATTACGGTGATT 1555
Query 1556 CAGCGAAACGCAACGCGTTAATCGCGATTCGGAGTTTGTTAATGAACCAACCTGATAATC 1615
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1556 CAGCGAAACGCAACGCGTTGATCGCGATTCGGAGTTTGTTAATTAACCAACCTGATAATC 1615
Query 1616 ACTGGCG-GATCCTCGCCGCCGGAATTGTTCCTGTTCTTCTAGATTTAGTGAAATCGGAG 1674
||||||| | |||| ||||||||| ||||||| |||||||| ||||||||||||||||||
Sbjct 1616 ACTGGCGTG-TCCTGGCCGCCGGAGTTGTTCCCGTTCTTCTCGATTTAGTGAAATCGGAG 1674
Query 1675 GAGATTAGCGACGGAGTTACGGCGGACTCGATGGCGATTTTAGCGAAAATGGCTGAGTAT 1734
||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 1675 GAGATCAGCGACGGAGTTACGGCTGATTCGATGGCGATTTTAGCGAAAATGGCGGAGTAT 1734
Query 1735 CCCGACGGGATGATATCAGTGCTCCGTCGTGGGGGATTAAAACTCGCGGTGAAGATATTG 1794
|| ||||||||||| ||||||||||||||||| |||||||| || ||||||||||| |||
Sbjct 1735 CCAGACGGGATGATTTCAGTGCTCCGTCGTGGAGGATTAAAGCTTGCGGTGAAGATTTTG 1794
Query 1795 GGTTCGTCGGAGGTTTCGCCGGCGACGAAACAGCATTGTGTTGCTCTGCTTTTGAATCTG 1854
|||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1795 GGTTCGTCGGAGGTTTCGTCGGCGACGAAGCAGCACTGTGTTGCTCTGCTTTTGAATCTG 1854
Query 1855 TGTCATAACGGCGGAAGTGACGTCGTTGGGTCTCTGGCTAAGAATCCGTCTATCATGGGG 1914
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1855 TGTCATAACGGCGGAAGTGACGTCGTTGGGTCTCTCGCTAAGAATCCGTCTATTATGGGG 1914
Query 1915 TCGCTTTACACGGCGTCAAGTAACGGAGAGTTGGGAGGTGGGAAAAAGGCAAGTGCTCTA 1974
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1915 TCGCTTTACACGGCGTCAAGTAACGGAGAGTTTGGAGGTGGGAAAAAGGCAAGTGCGCTT 1974
Query 1975 ATTAAAATGATCCACGAGTTTCAGGAGAGGAAAACCGGTCCGGGTGAACCGGTTCTAGAA 2034
|| ||| |||||||||| ||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1975 ATCAAATTGATCCACGAATTTCAGGAGAGGAAAACCGGTCCGGTTGAACCGGTTATAGAA 2034
Query 2035 AGAGAACGGTTTGTCCACGCCTGGTGAT-GATTTG-ATGATACACAATAACTCTTTGAGC 2092
|||||||||||| ||||||||||||||| ||| | | |||||| |||||||||||||
Sbjct 2035 AGAGAACGGTTTATCCACGCCTGGTGATTGATACACACGCTACACAGTAACTCTTTGAGC 2094
Query 2093 tttttttttATCAAAGAGTTAATATAACTTCATTTTTTATAGGTTAAGGTTGAAATACTA 2152
||||||| | | | | || | |||||||||||||||||||||| || |||||||
Sbjct 2095 TTTTTTT--A--A-----T-A-TA-A-CTTCATTTTTTATAGGTTAAGGATGTAATACTA 2141
Query 2153 TATTTTAC--A-ATACTTGTGTATATTTTAGTTCTGGGATTTTT-AATAACCCAAAGAGC 2208
||||||| | |||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 2142 -ATTTTACTTATATACTTGT--ATATTTTAGTTCTGGGATTTTTTAATAACCCAAAGAGC 2198
Query 2209 TA 2210
||
Sbjct 2199 TA 2200
> Ahg935365 jgi|Araly1|935365|scaffold_403353.1
Length=356
Score = 143 bits (77), Expect = 6e-33
Identities = 98/108 (91%), Gaps = 2/108 (2%)
Strand=Plus/Plus
Query 77 TAACCACTCTCGTCGACTCACTTTTACAACTCGCCGGCGAGATTCTTAGCTTCAAACCAA 136
||| |||||||||||||||||| ||||||||||||| |||||||| || ||||||||||
Sbjct 205 TAATCACTCTCGTCGACTCACTAATACAACTCGCCGGAGAGATTCTCAGTTTCAAACCAA 264
Query 137 AACACTTC-TCTACCAACAAAAGAAGTGTTAAAGAAACTCTCCGACAT 183
|| ||||| || |||||| |||||||||||||||||||||||||||||
Sbjct 265 AAGACTTCTTC-ACCAACCAAAGAAGTGTTAAAGAAACTCTCCGACAT 311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85703051250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5