BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G60200.1 Length=2896 Score E Sequences producing significant alignments: (Bits) Value Ahg925037 jgi|Araly1|925037|scaffold_200598.1 4204 0.0 > Ahg925037 jgi|Araly1|925037|scaffold_200598.1 Length=2884 Score = 4204 bits (2276), Expect = 0.0 Identities = 2704/2898 (93%), Gaps = 79/2898 (3%) Strand=Plus/Plus Query 42 ACTCCCATGGCCGACGAATCTTCTTCTCCGGCCACGGGGGATCCCAATTCACAGAAACCA 101 ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 18 ACTCCCATGGCCGACGAATCTTCTTCTCCGGCCACGGGGGATCTCAATTCTCAGAAACCA 77 Query 102 GAATCCACTACTCCGATTTCAATTCCCAATCCAAATCCCAATCCTTCACTAACACCACCG 161 ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 78 GAAGCCACTACTCCGATTCCAATTCCCAATCCAAATCCCAATCCTTCACTAACACCACCA 137 Query 162 CCGCCTCAACAACATTCGCAACCACCAGTCGCTCCTCTGGTTCCACCTGGTCCGCCTTAT 221 ||||||||||| ||| ||||||||| ||| ||| ||||| |||| ||||||||||||||| Sbjct 138 CCGCCTCAACACCATACGCAACCACAAGTAGCTGCTCTGATTCCGCCTGGTCCGCCTTAT 197 Query 222 GCTCCTCCGGCTCAGATTCCTAGCTCGCTTCTCCCCACCAATCTCCCGCCGCCACCACCA 281 |||||||| | ||||||||| |||| ||||||||||||||||| ||||||||||||||| Sbjct 198 ACTCCTCCGTCACAGATTCCTGGCTCACTTCTCCCCACCAATCTTCCGCCGCCACCACCA 257 Query 282 TTCCGTCCCGGTATGCAGTTCACTCCCGTTGCGAATTTTCAAAA--C---C-CT--AG-- 331 |||||||||||||||||||||||||||| || |||||||||||| | | || || Sbjct 258 TTCCGTCCCGGTATGCAGTTCACTCCCGCTGGGAATTTTCAAAACCCTAGCTCTGGAGTT 317 Query 332 -CT-CT------G-GAGTTC-CT--C--CTCCAGGATCTATGCCTCAGTATC-A----A- 371 || || | || ||| | | ||||||||||||||||||||||| | | Sbjct 318 CCTCCTCCCGGCGTGAATTCTATGGCGGTTCCAGGATCTATGCCTCAGTATCAACTGCAG 377 Query 372 ---CCG---CAGCCTGGTATGAGACCTTTCCAGCCTATGGCTAATGGTTATCCCGGAATT 425 ||| |||||||||||||| |||| |||||||||||||||||||| |||||||||| Sbjct 378 CCTCCGAACCAGCCTGGTATGAGGCCTTACCAGCCTATGGCTAATGGTTTTCCCGGAATT 437 Query 426 CATGGTGTTGCTCCTCCTGGTGCCATGCCTCCTCATGGGCTTCTCCGGTATCCTTCTCCA 485 ||||||||||||||||| | || | |||||||||||||||||||||||| Sbjct 438 CATGGTGTTGCTCCTCC---T-CC--G---------GGGCTTCTCCGGTATCCTTCTCCA 482 Query 486 TATCCAACAATGGTTCGTCCTGGATTCATTATGCGGCCGCCTGGTACAATCGGTGCTGTT 545 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 483 TATCCAACAATGGTTCGTCCTGGGTTCATTATGCGCCCGCCTGGTACAATCGGTGCTGTT 542 Query 546 CAACTAGCACCACGACC-CCTTATTCCAGGAATGCCTGGTCTCCGTCCTGTAATGCCTCC 604 ||||||||||||||||| | | | || |||||||||||||||||||||||||||||||| Sbjct 543 CAACTAGCACCACGACCTGC-TGTCCCGGGAATGCCTGGTCTCCGTCCTGTAATGCCTCC 601 Query 605 TATGGTTAGACCGGCTTCTCTTCCTTTTGTAACACCTGCAGAAAAGCCCCAGACCACAAT 664 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 602 TATGGTTAGACCAGCTTCTCTTCCTTTTGTAACACCTGCAGAAAAGCCCCAGACCACAAT 661 Query 665 TTACATTGGCAAGATAGCTACCGTGGAAAATGACTTTATGATGTCTATTCTTGAGTTTTG 724 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 662 TTACATTGGCAAGATAGCAACCGTGGAAAATGACTTTATGATGTCTATTCTCGAGTTTTG 721 Query 725 TGGCCATGTCAAAAGCTGTTTACGTGCGGAAGATCCTACCACCAAGAAACCTAAAGGTTT 784 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 722 TGGCCATGTCAAAAGCTGTTTACGTGCGGAAGATCCTACCACCAAGAAACCTAAAGGTTT 781 Query 785 TGGATTCTATGAATTTGAATCAGCTGAAGGGATTCTCCGCGCAATACGCCTGCTGACCCA 844 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| | Sbjct 782 TGGATTCTATGAATTTGAATCAGCTGAAGGGATTCTCCGTGCAATACGCCTACTGACCAA 841 Query 845 ACGTACTATAGATGGACAAGAGCTTTTGGTGAATGTTAATCAAGCAACAAAGGAGTATTT 904 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 842 ACGTACTATAGATGGACAAGAACTTTTGGTGAATGTTAATCAAGCAACAAAGGAGTATTT 901 Query 905 GCTAAAATATGTTGAGAAGAAAATAGAGACTGCAAAGAAAGCCAAGGAAAGTCAAG--G- 961 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 902 GCTAAAATATGTTGAGAAGAAAATAGAGACTGCAAAGAAAGCCAAGGAAAGTCAAGCTGT 961 Query 962 A--A-CCAAAGAGAACCAAGCTGAAGGTCCTGAGAGTGAGCAA-GACAAGCTTGAGAGTG 1017 | | || ||||||||||||||||||||||||| ||||||| | || || |||||||||| Sbjct 962 AGGAACCGAAGAGAACCAAGCTGAAGGTCCTGAAAGTGAGCGACGAAAA-CTTGAGAGTG 1020 Query 1018 CTGATAATGAGACAGGGAAGGATGGAGAATCGAAGATTAAAGAAAACATCGATATTGCGA 1077 |||| |||||||||||||| ||||||||| | |||| |||||||||||| |||||||||| Sbjct 1021 CTGAAAATGAGACAGGGAAAGATGGAGAACCCAAGAGTAAAGAAAACATTGATATTGCGA 1080 Query 1078 ATTCTGCTGTCCTAACTGATGAAGAAAGGGAAGCAGACAGAGAGGCTATGGAAAAGATTG 1137 ||||||| ||| ||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1081 ATTCTGCGGTCATAAATGACGAAGAAAGGGAAGCAGACAGAGAGGCTATGGAAAAGATTG 1140 Query 1138 AAACTGCTATTGAAGAAAGGTTAAAGTCCAACCCTTTGCCTCCTCCACC---ACCACCAC 1194 ||| ||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| Sbjct 1141 AAAGTGCTATTGAAGAAAGGTTAAAGTCCAACCCTCTGCCTCCACCACCCCCACCACCAC 1200 Query 1195 CTGCTGATGGTTCAGGCATGGAATTTGCTTTCAAATCTAAGGATGGTGACTCCAACACTG 1254 |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||| Sbjct 1201 CTGCTGATCGTTCAGGCATGGAACTTGCTTTCACATCTAAGGATGGTGACTCCAACACTG 1260 Query 1255 ACGTAGCTAGGAGTGATGCCGCAGCAAATGATGTTGAGACTTCTGGAGAACACAATAGGC 1314 || ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 1261 ACATAGCTAGGAGTGATGCCGCAGCAAATGATGTTGAGACTTCTAGAGAACAGAATAGGC 1320 Query 1315 CTGACACAAGCTCACCTGATTGGAGTAAGAGAAATGACCGAAGAAGCAGAGAAAGAGGTG 1374 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1321 CTGACACAAGCTCTCCTGATTGGAGTAAGAGAAATGACCGAAGAAGCAGAGAAAGAGGTG 1380 Query 1375 AGAAGGAGCAAGAAATGGATAGA-TACGAGAGGGAGGCTGAAAGAGAACGGTCAAGGAAA 1433 | |||||||||||||| |||||| | |||||||||||||||| |||||||| |||||||| Sbjct 1381 AAAAGGAGCAAGAAATTGATAGACT-CGAGAGGGAGGCTGAACGAGAACGGACAAGGAAA 1439 Query 1434 GAGAGAGAGCAAAGGAGGAAACTTGAGGATGCAGAGCGTGCTTACCAGACTCGTCTTCGA 1493 ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1440 GAGAGGGAGCTAAGGAGGAAACTTGAGGATGCAGAGCGTGCTTACCAGACTCGTCTTCGA 1499 Query 1494 CAATGggaacgaagagaaagagaaaaggagaaggaacgacagtacgagaaggagaaagag 1553 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1500 CAATGGGAACGCAGTGAAAGAGAAAAGGAGAAGGAACGACAGTACGAGAAGGAGAAAGAG 1559 Query 1554 aaagagaaagagcgcaagaggaaaaaggaaatccgctatgaggaagaagaggaagaagaC 1613 ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1560 AAAGATAAAGAGCGTAAGAGGAAAAAGGAAATCCGCTATGAAGAAGAAGAGGAAGAAGAC 1619 Query 1614 GATGATGATTCAAGAAGAAGATGGCATAGGGCTGCATTAGATGAGAGAAGAAGACGACAA 1673 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1620 GATGATGATTCAAGAAGAAGATGGCATAGGGCTGCATTAGATGAGAGAAGAAGACGACGA 1679 Query 1674 CTAAGAGAAAAGGAGGATGACTTAGCTGATAGATTGAAAGAAGAGGAAGAGGTTGCTGAG 1733 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1680 CTAAGAGAAAAGGAGGATGACTTAGCTGATAGATTGAAAGAAGAAGAAGAGGTTGCTGAG 1739 Query 1734 GCGAAGAGGAGTGCCGAGGAGCAAAATTTGCAGCAACAGCAATTAGATGCCTTAAGAATC 1793 |||||||| | ||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 1740 GCGAAGAGAAATGCCGAGGAGCAAAAGTTGCAGCAACAGCAATTAGATGCCTTAAGGATC 1799 Query 1794 CTATCGGGACAGGCAGCTATTGGAAGCGAAACGGTTCAGACATCACCTATTGAAAATGAT 1853 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1800 CTATCTGGACAGGCAGCTATTGGAAGTGAAACGGTTCAGACATCACCTATTGAAAATGAT 1859 Query 1854 CACAAGGCAACTCTCCAAACTGTCGGTGAATCTGCCAATGAGCACCATGCAGCAGATTTT 1913 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1860 CATAAGGCAACTCTCCAAACTGTCGGTGAATCTGCCAATGAGCACCATGCAGCAGATTTT 1919 Query 1914 GAAGAAAATGGTTCTGGTAATGAATCGATGGCTATCGATAATAATAGTGGATCAGAGGCA 1973 ||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 1920 GAACAAAATGGTTCTGGTAATGAATCCATGGCTATTGATAATAATAGTGGATCAGAGGCA 1979 Query 1974 CATGCTCCCTCAAAGAAATTAGGATTTGGGCTTGTGGGATCCGGAAAGCGAACTTCTGTG 2033 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1980 CATGCTCCCTCAAAGAAATTAGGGTTTGGGCTTGTGGGATCCGGAAAGCGAACATCTGTG 2039 Query 2034 CCTTCTGTTTTCTATGAGGAGGATGAAGATGAAGCACGTAAGGCTAAAAAGATGAAACCT 2093 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 2040 CCTTCTGTTTTCTATGAGGAGGATGAAGACGAAGCGCGTAAGGCTAAAAAGATGAAACCT 2099 Query 2094 TTGGTTCCTATAGATTACTCAACCGAGGAACAAGAGGCTGTGGCCCATGGTGGCTCAGGG 2153 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 2100 TTGGTTCCTATAGATTACTCAACCGAGGAACAGGAGGCCGTGGCCCATGGTGGCTCAGGG 2159 Query 2154 AATACACCACCTCATTTGGCTTTAGCCGCTGAATTTGCAAAACGAATTTCGAGTACCAAT 2213 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 2160 AATACACCACCTCATTTGGCTTTAGCCGCTGAATTTGCTAAACGAATTTCGAGTACTAAT 2219 Query 2214 CCCAAGGAAGAGACGATAGAAACCGAAAAACAAAGGAGCAGACGTTCTCATGATAAGGCA 2273 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 2220 CCCAAGGAAGAGACAATAGAAACCGAAAAACAAAGGAGCAGACGTTCTCATGATAAGTCA 2279 Query 2274 AGCCACCgggacagggaaagggaaagggaaagggacagggacagggaTAGAGTCAGGGAC 2333 ||||||||||||||||||||||||||||| ||||||||| | | |||||||| Sbjct 2280 AGCCACCGGGACAGGGAAAGGGAAAGGGA------CAGGGACAG--A--G--TCAGGGAC 2327 Query 2334 CGAGGTGACGGGCATAGTGGTCCCACCAAAGACGCCAAAGAGTCTGGAAAAGCAAAGATA 2393 |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 2328 CGAGGTGATGGGCATAGTGGTCCAACCAAAGACGCTAAAGAGTCTGGAAAAGCAAAGATA 2387 Query 2394 ATTGATACTAAGTTTCTGGATGCGAAACAATTGATAGATACAATCCCAAAGACAAAGGAA 2453 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2388 CCTGATACCAAGTTTCTGGATGCGAAACAATTGATAGATACAATCCCAAAGACAAAGGAA 2447 Query 2454 GATTTATTTTCTTACGAGATAAACTGGGCTATGTATGACAAGCACCAAGTGCACGAAAGA 2513 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2448 GACTTATTTTCGTACGAGATAAACTGGGCTATGTATGACAAGCACCAAGTGCACGAAAGA 2507 Query 2514 ATGAGACCATGGATCTCAAAGAAAATTATGGAGTTTCTCGGAGAAGAGGAAGCCACTCTG 2573 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2508 ATGAGACCATGGATCTCAAAGAAAATTATGGAGTTTCTCGGAGAAGAGGAAGCCACGCTG 2567 Query 2574 GTAGATTTCATCGTGTCAAACACTCAACAACACGTGCAGGCGTCTCAGATGCTTGAGCTG 2633 |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct 2568 GTAGATTTCATCGTGTCAAACACTCAACAACACGTGAAGGCGTCTCAGATGCTCGAGCTG 2627 Query 2634 TTGCAATCAATTCTAGACGAAGAAGCTGAGATGTTTGTGCTGAAGATGTGGAGAATGCTC 2693 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2628 TTGCAATCAATTCTAGACGAAGAGGCTGAGATGTTTGTGCTGAAGATGTGGAGAATGCTC 2687 Query 2694 ATCTTTGAGATCAAGCGGGTTGAAGCTGGAGTCCCGGTAAAATCCAAAGCCTGAAACTTT 2753 |||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 2688 ATCTTTGAAATCAAGCGAGTCGAAGCTGGAGTCCCGGTAAAATCCAAAGCCTGAAACTTT 2747 Query 2754 TCTTTAAAGATCTTTATCTTCCTTTGTTGCTTAGTATCCCAAtttttttCCAAGTCTTCT 2813 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2748 TCTTTAAAGATTTTTATCTTCCTTTGTTGCTTAGTATCCCAATTTTTTTC-AAGTCTTCT 2806 Query 2814 TGTCTTTGGATTAAAAAAGAATCGCCATGTTTAAATGCAAAAGAAGATATTGAAACAAGA 2873 ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2807 TGTCTTTGGATTATAAAAGAATCGCCATGTTTAAATGCAAAAGAAGAGATTGAAACAAGA 2866 Query 2874 AAATACAAAATATACATT 2891 ||||||||| |||||||| Sbjct 2867 AAATACAAATTATACATT 2884 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 109319003150 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5