BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G60470.1 Length=1343 Score E Sequences producing significant alignments: (Bits) Value Ahg475283 jgi|Araly1|475283|fgenesh2_kg.2__413__AT1G60470.1 1986 0.0 Ahg907432 jgi|Araly1|907432|Al_scaffold_0002_513 887 0.0 > Ahg475283 jgi|Araly1|475283|fgenesh2_kg.2__413__AT1G60470.1 Length=1326 Score = 1986 bits (1075), Expect = 0.0 Identities = 1226/1299 (94%), Gaps = 9/1299 (1%) Strand=Plus/Plus Query 47 CAAACTGTTCTTTTACTTCTCAAACACTCAAGAAAACTTTTCAGTTATCTTCT--ATAAC 104 |||| ||||| |||||||||||||||||||||||||||||||| ||||||||| | ||| Sbjct 32 CAAATTGTTCATTTACTTCTCAAACACTCAAGAAAACTTTTCAATTATCTTCTCAAAAAC 91 Query 105 CTACCCCAATACTTTTTCTTTGCTCAAAATGGCCCCTGAGATTTCCGTAAACCCGATGTA 164 | |||||||||||||| |||||| ||||||||||||| ||||| |||||||| | || || Sbjct 92 CCACCCCAATACTTTTACTTTGCACAAAATGGCCCCTCAGATTCCCGTAAACTCAATCTA 151 Query 165 TTTATCCGAAAAGGCGCATCAAGCACCTCCAAGGAGAGCTTATGTGACGTTTTTGGCAGG 224 |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 152 CTTATCCGAAAAGGCGCATCAAGCACCCCCAAAGAGAGCTTATGTGACGTTTTTGGCAGG 211 Query 225 AAATGGAGACTACGTGAAGGGAGTGGTGGGACTAGCAAAGGGTTTGCGTAAGGTCAAAAG 284 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 212 AAATGGAGACTACGTGAAGGGAGTGGTGGGATTAGCAAAGGGTTTGCGTAAGGTCAAAAG 271 Query 285 TGCGTATCCTCTTGTTGTTGCTATGTTACCTGATGTGCCTGAGGAACATAGAGAGATCTT 344 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 272 TGCTTATCCTCTTGTTGTTGCTATGTTACCTGATGTGCCTGAGGAACATAGAGAGATCTT 331 Query 345 GAGGTCTCAAGGCTGTGTCGTGCGTGAGATCGAACCTGTTTATCCTCCAGACAACCAAGT 404 |||||||||||||||| || |||| |||||||| ||||||||||||||||| |||||||| Sbjct 332 GAGGTCTCAAGGCTGTATCCTGCGCGAGATCGAGCCTGTTTATCCTCCAGAAAACCAAGT 391 Query 405 TGAGTTTGCCATGGCTTATTACGTTCTCAACTACTCAAAACTTCGTATTTGGAACTTTGA 464 |||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| Sbjct 392 TGAGTTTGCCATGGCTTACTATGTTCTCAACTACTCAAAGCTTCGTATTTGGAACTTTGA 451 Query 465 AGAGTACAGCAAGATGATATACCTTGACGCAGATATTCAAGTCTTTGACAATATCGATCA 524 ||||||| |||||||||||||||||| |||||||||||||||||||| || |||||| | Sbjct 452 AGAGTACCTCAAGATGATATACCTTGATGCAGATATTCAAGTCTTTGAAAACATCGATGA 511 Query 525 CCTCTTTGATTTGTCTGATGCATATTTCTATGCCGTGATGGACTGTTTCTGTGAGAAAAC 584 ||||| |||||| |||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 512 ACTCTTCGATTTGCCTGATGGGTATTTCCATGCCGTGATGGACTGTTTCTGTGAGAAAAC 571 Query 585 ATGGAGCCACTCGCTGCAGTATTCAATTGGGTATTGTCAACAGTGCCCGGAGAAGGTCAC 644 ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 572 ATGGAGCCACTCGCTGCAGTATTCAATTGGGTACTGTCAACAGTGCCCGGATAAGGTCAC 631 Query 645 GTGGCCAGAAGATATGGAATCTCCACCTCCTCCTCTGTATTTCAACGCCGGTATGTTTGT 704 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 632 GTGGCCAGAAGATATGGAATCTCCACCTCCTCCTCTGTATTTCAACGCCGGTATGTTTGT 691 Query 705 GTTTGAGCCTAGTCCTTTGACTTATGAGAGTCTCCTTCAGACCCTGGAGATCACACCACC 764 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 692 GTTTGAGCCTAGTCCTTTGACTTATGAGAGTCTCCTTCAGACCCTGGAGATCACACCACC 751 Query 765 TTCACCGTTTGCAGAACAAGATTTTCTCAATATGTTCTTTGAGAAAGTGTACAAACCGAT 824 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 752 TTCACCGTTTGCAGAACAAGATTTTCTCAATATGTTCTTTGAGAGAGTGTACAAACCGAT 811 Query 825 CCCTTTGGTATACAATCTGGTTTTGGCTATGCTTTGGCGTCACCCGGAGAACGTGGAGCT 884 |||| | || |||||||||||| |||||||||||||||||||||| |||||||||||||| Sbjct 812 CCCTCTAGTTTACAATCTGGTTCTGGCTATGCTTTGGCGTCACCCAGAGAACGTGGAGCT 871 Query 885 GGAGAAAGTCAAAGTTGTTCACTACTGTGCAGCTGGATCCAAGCCATGGAGATACACAGG 944 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 872 GGAGAAAGTCAAAGTTGTTCACTACTGTGCAGCTGGATCCAAGCCATGGAGGTATACAGG 931 Query 945 AGAAGAAGCTAACATGGACAGAGAAGACATCAAGATGTTAGTTGATAAATGGTGGGATGT 1004 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 932 AGAAGAAGCTAACATGGACAGAGAAGACATCAAGATGTTAGTTGATAAATGGTGGGATGT 991 Query 1005 CTATAATGATGAATCTCTCGATTTCAAATCGAAAATCCCTGCAGATGCGGAAGAAACCGT 1064 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 992 CTATAATGATGAATCTCTCGATTTCAAATCGATAATCCCTGCAGATGCGGAAGAAACCGT 1051 Query 1065 TACAAAATCAAGCATCCTAGCTTCCGTTCTTGAACCAGAAATGACCTACTTTCCTGCTCC 1124 ||||||||| |||||||||||||| || || ||||||||||| |||||||| || || || Sbjct 1052 TACAAAATCGAGCATCCTAGCTTCGGTACTCGAACCAGAAATTACCTACTTCCCAGCACC 1111 Query 1125 TTCTGCTGCTTGAGATATCTTGCAGGGAAGT-CACAAGACTTGGTGTGTTCCTCTATCTG 1183 ||| |||||||||||| |||| ||||||||| |||||||||||||||||||||||||||| Sbjct 1112 TTCCGCTGCTTGAGATGTCTTACAGGGAAGTGCACAAGACTTGGTGTGTTCCTCTATCTG 1171 Query 1184 TTTTCTTTTGATATATGTATACATAGTTTGAAATAGTATTAACCAGAAAATAGAAACCTT 1243 |||||||||||| ||| ||||||||||||||||||||| || |||||| |||||||||| Sbjct 1172 TTTTCTTTTGATCTAT--ATACATAGTTTGAAATAGTAT-AAGCAGAAA-TAGAAACCTT 1227 Query 1244 GGTGAGTT-TTTTCTCGACCCGAGAGGTTTTCAAATAGTATTGCTAAAGTGTGTAAG-TG 1301 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1228 GGTGAGTCCTTTTCTCGACCCGAGAGGTTTTCAAATAGTATTGCTAAAGTGTGTAAGGTG 1287 Query 1302 TTAAAGTACTAAGGAAATGAAGTGTTTGTATTGCTATAT 1340 ||||| ||||||||||||||||| ||||||||||||||| Sbjct 1288 TTAAATTACTAAGGAAATGAAGTATTTGTATTGCTATAT 1326 Score = 58.4 bits (31), Expect = 1e-07 Identities = 31/31 (100%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1 ACTCACAAGCCAAAGACCAAAGTAACTAAAA 31 ||||||||||||||||||||||||||||||| Sbjct 1 ACTCACAAGCCAAAGACCAAAGTAACTAAAA 31 > Ahg907432 jgi|Araly1|907432|Al_scaffold_0002_513 Length=993 Score = 887 bits (480), Expect = 0.0 Identities = 766/903 (85%), Gaps = 24/903 (3%) Strand=Plus/Plus Query 198 GAGAGCTTATGTGACGTTTTTGGCAGGAAATGGAGACTACGTGAAGGGAGTGGTGGGACT 257 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 57 GAGAGCATACGTGACGTTTTTGGCAGGAAATGGAGACTACGTGAAGGGAGTGGTGGGATT 116 Query 258 AGCAAAGGGTTTGCGTAAGGTCAAAAGTGCGTATCCTCTTGTTGTTGCTATGTTACCTGA 317 ||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||| Sbjct 117 AGCAAAGGGTTTGCGGAAAGTCAAAAGTGCGTATCCTCTTGTTGTTGCTACGTTACCTGA 176 Query 318 TGTGCCTGAGGAACATAGAGAGATCTTGAGGTCTCAAGGCTGTGTCGTGCGTGAGATCGA 377 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 177 TGTGCCTGAGGAACATAGAGAGATCTTGAGGTCTCAAGGCTGCGTTGTGCGTGAGATCGA 236 Query 378 ACCTGTTTATCCTCCAGACAACCAAGTTG-AGTTTGCCATGGCTTATTACGTTCTCAACT 436 |||||| |||||||||| | ||||| || | | || | ||||||||||||| | |||| Sbjct 237 GCCTGTTCATCCTCCAGATAGCCAAGATGCA-TACGCAAGGGCTTATTACGTTATTAACT 295 Query 437 ACTCAAAACTTCGTATTTGGAACTTTGAAGAGTACAGCAAGATGATATACCTT-GACGCA 495 |||| ||||| || |||||||||||||||||||||| ||||||| | ||| || || | | Sbjct 296 ACTCCAAACTGCGAATTTGGAACTTTGAAGAGTACAACAAGATGGTTTAC-TTAGATGGA 354 Query 496 GATATTCAAGTCTTTGACAATATCGATCACCTCTTTGATTTGTCTGATG-CATATTT-CT 553 ||||||||||||||||||||||||||| ||||||| |||||| |||| | ||| | | Sbjct 355 GATATTCAAGTCTTTGACAATATCGATGACCTCTTCGATTTGGAAGATGGC-TATGTAC- 412 Query 554 ATGCCGTGATGGACT-GTTTCTGTGAGAAAACATGGAGC--CACTCGCTGCAGTATTCAA 610 ||| |||| || | | ||||||||||||||| |||||| ||||| || | || || | Sbjct 413 ATGGCGTGTTG-AGTTGTTTCTGTGAGAAAATATGGAGTTACACTC-CT-CTCTACTCGA 469 Query 611 TTGGGTATTGTCAACAGTGCCCGGAGAAGGTCACGTGGCCAGAAGATATGGAATCTCCAC 670 | || ||||||||| | || || |||||||||| |||||| | || ||| ||||| | | Sbjct 470 TCGGTTATTGTCAATATTGTCCAGAGAAGGTCATGTGGCCGGCCGAAATGAAATCTGCTC 529 Query 671 CTCCTCCTCTGTATTTCAACGCCGGTATGTTTGTGTTTGAGCCTAGTCCTTTGACTTATG 730 |||||||| || ||||| || ||||||||||| |||||||||| ||||||||| |||| Sbjct 530 GTCCTCCTCCATACTTCAATGCTGGTATGTTTGTCTTTGAGCCTAATCCTTTGACGTATG 589 Query 731 AGAGTCTCCTTCAGACCCTGGAGATCACACCACCTTCACCGTTTGCAGAACAAGATTTTC 790 ||||||||||||| ||||| |||||||||| |||||||||||||| || |||||||||| Sbjct 590 AGAGTCTCCTTCATACCCTCCAGATCACACCGCCTTCACCGTTTGCGGAGCAAGATTTTC 649 Query 791 TCAATATGTTCTTTGAGAAAGTGTACAAACCGATCCCTTTGGTATACAATCTGGTT-TTG 849 |||||||||||||||||||||| | |||||| || || ||| ||||| ||| || || Sbjct 650 TCAATATGTTCTTTGAGAAAGTTTTTAAACCGGTCTCTCCGGTTTACAACCTGATTCTTT 709 Query 850 GCTATGCTTTGGCGTCACCC-GGAGAACGTGGAGCT-GGAGAAAGTCAAAGTTGTTCACT 907 || |||||||||| || || || ||| || || || ||||| ||||||||||||||| | Sbjct 710 -CTGTGCTTTGGCGCCATCCTGG-GAATGTTGA-CTTGGAGAGAGTCAAAGTTGTTCATT 766 Query 908 ACTGTGCAGCTGGATCCAAGCCATGGAGATACACAGGAGAAGAAGCTAACATGGACAGAG 967 ||||| || ||||||||||||||||||| ||||||||||||||| ||||||||||||| | Sbjct 767 ACTGTCCACCTGGATCCAAGCCATGGAGGTACACAGGAGAAGAACCTAACATGGACAGGG 826 Query 968 AAGACATCAAGATGTTAGTT-GATAAATGGTGGGATGTCTATAATGATGAATCTCTCGAT 1026 ||||| |||| |||||| || | |||||||||||| ||||||| || || ||||| ||| Sbjct 827 AAGACGTCAAAATGTTAATTAGG-AAATGGTGGGATATCTATAACGACGAGTCTCTTGAT 885 Query 1027 TTCAAATCGAAAATCCCTGCAGATGCGGAAGAAACCGTTACAAAATCAAGCATCC-TAGC 1085 |||||| |||||| |||||||||| ||||| |||| || | ||||||| || | |||| Sbjct 886 TTCAAACCGAAAAACCCTGCAGATTTGGAAGCAACCCTTTCGAAATCAA-CAACTATAGC 944 Query 1086 TTC 1088 ||| Sbjct 945 TTC 947 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50246004606 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5