BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G60550.1 Length=1308 Score E Sequences producing significant alignments: (Bits) Value Ahg475277 jgi|Araly1|475277|fgenesh2_kg.2__407__AT1G60550.1 1868 0.0 > Ahg475277 jgi|Araly1|475277|fgenesh2_kg.2__407__AT1G60550.1 Length=1222 Score = 1868 bits (1011), Expect = 0.0 Identities = 1149/1215 (95%), Gaps = 11/1215 (1%) Strand=Plus/Plus Query 34 TTTTTTCAATTGAAAAATGTATTATCACCACCATTGTCAAAGCCCATGCTCTAGAATCTT 93 ||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 1 TTTTTTCAATTAAAAAATGTATTATCATCACCATTGTCAAAGTCCATGCTCTAGAATCTT 60 Query 94 TGGTAGTCTTCATCATCTTTCTCTATCTCTCGTC-ATCCTATCCAATGGCGGATTCCAAT 152 |||| || || ||||||||||||| ||||||||| | |||||||||||||||||||||| Sbjct 61 TGGTCGTTTTTATCATCTTTCTCTGTCTCTCGTCGA-CCTATCCAATGGCGGATTCCAAG 119 Query 153 GAGCTTGGCTCGGCGAGCCGACGACTCTCCGTCGTCACCAATCATCTCATCCCTATCGGA 212 |||||||||||||||||||| ||| |||||||||||||||| |||||||||||||| ||| Sbjct 120 GAGCTTGGCTCGGCGAGCCGGCGAATCTCCGTCGTCACCAACCATCTCATCCCTATTGGA 179 Query 213 TTCAGTCCAGCTCGTGCTGACTCAGTGGAACTCTGTAGTGCTTCGTCGATGGATGATAGA 272 |||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 180 TTCAATCCAACTCGTGTTGACTCAGTGGAACTCTGTAGTGCTTCGTCGATGGATGATAGT 239 Query 273 TTCCATAAGGTTCACGGTGAAGTTCCGACCCACGAAGTCGTTTGGaaaaaaaCTGATTTC 332 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 240 TTCCATAAGGTTCACGGTGAAGTTCCGACCCACGAAGTCGTTTGGAAAAAAGCTGAGTTC 299 Query 333 TTTGGTGAAGGAGATAACAAGGAGTTTGTTGATATTATTTATGAGAAAGCCCTTGATGAA 392 |||| ||| |||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 300 TTTGTTGACGGAGATAATAAGGAGTTTGTTGACATTATTTATGAGAAAGCCCTTGATGAA 359 Query 393 GGCATTGCAAAGATTACTATAAACCGGCCAGAGAGAAGAAATGCGTTCCGGCCTCAGACT 452 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 360 GGCATTGCAAAGATTACTATAAATCGGCCAGAGAGAAGAAATGCGTTCCGGCCTCAGACT 419 Query 453 GTGAAGGAGCTTATGCGTGCGTTTAATGATGCTAGAGATGATAGCTCTGTAGGAGTCATC 512 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 420 GTGAAGGAGCTTATGCGTGCGTTTAATGATGCTAGAGATGACAGCTCTGTAGGAGTCATC 479 Query 513 ATACTCACCGGCAAGGGAACAAAAGCATTTTGCAGTGGTGGTGATCAGGCTTTGAGAACA 572 |||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 480 ATACTCACTGGCAAGGGAACAAAAGCATTTTGCAGTGGTGGTGATCAGGCGTTAAGAACA 539 Query 573 CAAGACGGGTATGCTGATCCCAATGACGTTGGCCGCCTTAATGTTCTTGATCTTCAGGTT 632 |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| || Sbjct 540 CAAGACGGTTATGCTGATCCCAATGATGTTGGCCGCCTTAATGTTCTTGATCTTCAGATT 599 Query 633 CAAATCCGCAGATTGCCAAAGCCAGTTATTGCAATGGTAGCTGGTTATGCTGTTGGAGGA 692 ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| Sbjct 600 CAAATCCGCAGATTGCCAAAGCCAGTTATCGCGATGGTTGCTGGTTATGCTGTTGGAGGG 659 Query 693 GGACACATTTTGCACATGGTCTGCGATCTAACAATTGCAGCTGATAATGCGATTTTTGGT 752 ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 660 GGACATATCTTGCACATGGTCTGCGATCTAACAATTGCAGCTGATAATGCTATTTTTGGT 719 Query 753 CAAACGGGTCCTAAGGTTGGAAGTTTTGATGCTGGTTATGGAAGTTCCATCATGTCTCGT 812 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 CAAACGGGTCCTAAGGTTGGAAGTTTTGATGCTGGTTATGGAAGTTCCATCATGTCTCGT 779 Query 813 CTGGTTGGTCCTAAAAAGGCACGAGAAATGTGGTTTATGACGAGGTTCTACACAGCTTCT 872 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 CTGGTTGGTCCAAAAAAGGCACGAGAAATGTGGTTTATGACGAGGTTCTACACAGCTTCT 839 Query 873 GAAGCAGAGAAAATGGGACTTATCAATACAGTTGTACCGCTAGAGGAT-TTGGAGAAAGA 931 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 840 GAAGCAGAGAAAATGGGACTTATCAATACAGTTGTACCGCTAGAG-ATGTTGGAGAAAGA 898 Query 932 AACTGTGAAATGGTGCAGAGAAATCTTACGGAACAGTCCAACTGCAATCCGAGTACTTAA 991 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 899 AACTGTGAAATGGTGCAGAGAAATCTTACGGAACAGTCCAACTGCAATCCGAGTGCTTAA 958 Query 992 GGCAGCACTTAATGCAGTTGATGATGGCCATGCCGGCCTTCAGGGACTCGGTGGTGATGC 1051 ||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||| ||||| Sbjct 959 GGCAGCACTCAATGCTGTTGACGATGGCCATGCCGGACTTCAGGGACTCGGTGGCGATGC 1018 Query 1052 GACACTCTTATTCTATGGAACCGAAGAAGCTACTGAAGGGAGAACTGCTTATATGCACCG 1111 |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| || Sbjct 1019 GACACTCTTATTCTATGGAACCGAAGAAGCTATTGAAGGAAGAACTGCTTATATGCAACG 1078 Query 1112 CCGACCACCGGACTTCTCTAAATTTCACCGGCGACCTTAAACACATTTCTAGCTCTGTTC 1171 |||||||||||||||||||||||||| ||||||||||||||| || ||||||||| |||| Sbjct 1079 CCGACCACCGGACTTCTCTAAATTTCCCCGGCGACCTTAAACTCACTTCTAGCTCAGTTC 1138 Query 1172 AGGTGTTTTCATTAGAGCATTTGTTC-TCATTCCAATCCAAGTCTCttttttt-tttctt 1229 ||||| |||||||| ||||||||| | ||||||||||||||||| ||||||| ||| || Sbjct 1139 AGGTGGTTTCATTACAGCATTTGT-CATCATTCCAATCCAAGTC-CTTTTTTCATTTGTT 1196 Query 1230 tt-tttt-ttt-cca 1241 || |||| ||| ||| Sbjct 1197 TTGTTTTGTTTACCA 1211 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48911702511 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5