BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60590.1
Length=1982
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924996 jgi|Araly1|924996|scaffold_200557.1 2540 0.0
Ahg919854 jgi|Araly1|919854|scaffold_101135.1 185 9e-46
> Ahg924996 jgi|Araly1|924996|scaffold_200557.1
Length=1661
Score = 2540 bits (1375), Expect = 0.0
Identities = 1579/1672 (94%), Gaps = 36/1672 (2%)
Strand=Plus/Plus
Query 90 AACAACAAAAAGACATGATAACGAGAGAGAGTTTAACGCTGAGAAGCATCACAATGATGA 149
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 10 AACAACAAAAAGACATGATAACGAGAGAGAGTCTAAGGCTGAGAAGCATCACAATGATGA 69
Query 150 CTTTAGTGACAATCCTGGTCTGGTCTGCAACTCTAGAGACCTGCATTGCCAGAAGAGGAA 209
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 70 TTTTAGTGACAATCCTGGTCTGGTCTACAACTCTAGAGACTTGCATTGCCAGAAGAGGAA 129
Query 210 GACATTGGAGACACCACCATAGGAGCTCCTCCTCTTTGTCTGATTCCTTGTCCAGCAAGA 269
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 130 GACATTGGAGACACCACCATAGCAGTTCCTCCTCTTTGTCTGATTCCTTGTCCAGCAAGA 189
Query 270 AACCAAAAAGCCATGAGAACAACCAC--CACCA--CATGTCCCATAAGT------CAAAA 319
||||||||||||||| |||||||||| || | ||| |||||||||| |||||
Sbjct 190 AACCAAAAAGCCATGTGAACAACCACAACAATAGTCAT-TCCCATAAGTCAAAACCAAAA 248
Query 320 CCAAAACCGAAGATGAAAACTCAGCCGCCAAAATCCAA-CGACGGTTCACCTGTTGTGTC 378
|||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||
Sbjct 249 CCAAAACCGAAGATGAAAACTCAGCCGCCAAAAT-CAAGTGACGGTTCACCTGTCGTGTC 307
Query 379 ACAGccaccacaagttcaacaaccaccaccaccacatgtccaaccaccaccaacaccTCT 438
||||||||||||||||||||||||||||||| | || | |||||||
Sbjct 308 ACAGCCACCACAAGTTCAACAACCACCACCA-C-CA--T--------------CACCTCT 349
Query 439 TCCGCTGCAGCCAGTTGA---GGACTCTCAACAATTCAATGTGCTTGATTTTGGAGCTAA 495
||||||| |||||||||| |||||| ||| ||||||||||||||||||||||||||||
Sbjct 350 TCCGCTGAAGCCAGTTGATGGGGACTCACAAGAATTCAATGTGCTTGATTTTGGAGCTAA 409
Query 496 GGGTGATGGAATGAGTGATGACACTCAGGCGTTTGAAGCTGCATGGGCATCTGCCTGCAA 555
||||||||| ||||||||||||||| |||||||| |||| || |||||||||||||||||
Sbjct 410 GGGTGATGGCATGAGTGATGACACTGAGGCGTTTAAAGCGGCGTGGGCATCTGCCTGCAA 469
Query 556 AGTCGAGGCCTCAACGATGATCATACCGCCTGACTACATCTTCCTCGTTGGCCCGATTTC 615
|||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 470 AGTCGAAGCGTCAACGATGATCATACCGCCGGACTACATCTTCCTCGTCGGCCCGATTTC 529
Query 616 ATTCTCGGGTCCTTATTGTCAAGCAAACATTGTATTCCAACTGGAGGGGATGATTGTAGC 675
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 530 CTTTTCGGGTCCTTATTGTCAAGCAAACATTGTATTCCAACTGGATGGGATGATTGTAGC 589
Query 676 TCCTACCGATACTGAATCGTGGGGAGGAGGGTTAATGTGGTGGATTGAGTTCACGAAGCT 735
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 TCCTACGGATACTGAATCGTGGGGAGGAGGGTTAATGTGGTGGATTGAGTTCACGAAGCT 649
Query 736 TAGCGGAATTACAATACAAGGTAATGGTGTTATTGATGGAAGAGGCACTGTTTGGTGGCA 795
|| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 650 TAAAGGAATTACAATTCAAGGTAAAGGTGTTATTGATGGAAGAGGTACTGTTTGGTGGCA 709
Query 796 ACAAGATTACCTTTCCGATTATCCTATCGACGATGACTTTAAGCTCATTGTCCCGTTGAA 855
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 710 ACAAGATTACCTTTCCGATTATCCTATCGACGATGACTTCAAGCTCATTGTCCCGTTGAA 769
Query 856 CAACTCGGTCCAAGAACGTCCTCCAATGCCGATAAGAAGTGAACTTAATTGGAGAATGCC 915
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 770 CAATTCGGTCCAAGAACGTCCTCCAATGCCGATAAGAAGTGAGCTTAATTGGAGAATGCC 829
Query 916 AAGTATTAAACCAACGGCGCTGAGGTTTTATGGCAGTATCGATGTGACTGTGACGGGTAT 975
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 830 AAGCATTAAACCAACGGCGCTGCGGTTTTATGGCAGTATCGATGTGACTGTGACGGGTAT 889
Query 976 AACTATACAGAACAGTCCTCAATGTCACCTCAAATTTGATAACTGTGTCAAGGTTTTAGT 1035
||| || |||||||||||||||||||||||||| ||||||||||| ||| ||||||||||
Sbjct 890 AACCATTCAGAACAGTCCTCAATGTCACCTCAAGTTTGATAACTGCGTCCAGGTTTTAGT 949
Query 1036 TCATGACGTGAATGTGTCTTCTCCCGGAGACAGTCCAAACACAGATGGGATTCATCTT-C 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 950 TCATGACGTGAATGTGTCTTCTCCCGGAGACAGTCCAAACACAGATGGGATTCAT-TTGC 1008
Query 1095 AGAACACCAGAGATGTCATGATTCACACCACCACACTAGCTTGCGGAGACGATTGTATTT 1154
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1009 AGAACACCAAAGATGTCATGATTCACACCACCACATTAGCTTGCGGAGACGATTGTATTT 1068
Query 1155 CGATTCAAACCGGTTGCTCCAATGTGTATGTTCACAATGTGAATTGTGGACCAGGGCATG 1214
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1069 CGATTCAAACGGGTTGCTCCAATGTGTATGTTCACAATGTGAATTGTGGACCAGGACATG 1128
Query 1215 GAATCAGCATTGGTAGCCTTGGTAAAGACAGTACCAAAGCCTGTGTCTCCAACATAACAG 1274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 GAATCAGCATTGGTAGCCTTGGTAAAGACAGTACCAAAGCCTGTGTCTCCAACATAACAG 1188
Query 1275 TCCGAGATGTCGTTATGCACAACACAATGACCGGTGTCCGGATCAAGACTTGGCAGGGAG 1334
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 TCCGAGATGTAGTTATGCACAACACAATGACCGGTGTCCGGATCAAGACTTGGCAGGGAG 1248
Query 1335 GTATAGGGTCAGTGAAAGGAATACTTTTCTCAAATATTCAACTCACAGAGGTTCAGCTAC 1394
||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1249 GTATAGGATCAGTGAAAGGAATACTTTTCTCAAACATTCAACTCAAAGAGGTTCAGCTAC 1308
Query 1395 CGATAGTGATCGATCAATTCTACTGTGATCACAGCAAATGCATGAACCATACTTCAGCAG 1454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 CGATAGTGATCGATCAATTCTACTGTGATCACAGCAAATGCATGAACCATACTTCAGCAG 1368
Query 1455 TGTCCGTAGAAGGAGTCACATATGAGAAGATACGAGGCACTTACACCGTGAAGCCTGTGC 1514
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1369 TGTCCGTAGAAGGAGTCACATATGAGAAGATACGCGGAACTTACACCGTGAAGCCTGTGC 1428
Query 1515 ATTTTGCTTGCAGTGACAGTTTCCCTTGCATAGACGTGCAATTATCAGGCATAGAGCTAA 1574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1429 ATTTTGCTTGCAGTGACAGTTTCCCTTGCATAGACGTGCAATTATCAGGCATAGAGCTAA 1488
Query 1575 AACCAGTGCAACTACAATACCACATGTACGATCCATTTTGTTGGAAAACATTTGGAGAGC 1634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 AACCAGTGCAACTACAATACCACATGTACGATCCATTTTGTTGGAAAACATTTGGAGAGC 1548
Query 1635 TCAATTCCGCAACCGTTCCACCGATTGATTGCTTACAGATCGGAAAGCCAGCGCGAAATG 1694
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1549 TCAATTCGGCAACCGTTCCACCGATTGATTGCTTACAGATCGGAAAGCCAGCCCGAAATG 1608
Query 1695 GAGTCCATTCAGATCATGATATATGTTTATGACCTACAGGGGAATGCAAAAT 1746
|||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1609 GAGTCCATTCAGATCATGATATATGTTTATAACCTACAGGGGAATGTAAAAT 1660
> Ahg919854 jgi|Araly1|919854|scaffold_101135.1
Length=469
Score = 185 bits (100), Expect = 9e-46
Identities = 181/218 (83%), Gaps = 14/218 (6%)
Strand=Plus/Plus
Query 91 ACAACAAAAAGACATGATAACGAG-AGAGAGTTTAACG-CTGAGAAGCATCACAATGATG 148
|||||||||| | ||||||| ||| ||| ||| ||| | |||||||||||||| ||||||
Sbjct 12 ACAACAAAAA-A-ATGATAATGAGAAGA-AGTCTAA-GTCTGAGAAGCATCACGATGATG 67
Query 149 ACT-TTAGTGACAATCCTGGTCTGGTCTGCAACTCTAGAGACCTGCATTGCCAGAAGAGG 207
| | ||| || | | |||||||||| | |||||||||||||||||||||||||||||
Sbjct 68 A-TATTAATGGCTGTTTTGGTCTGGTCAGTGACTCTAGAGACCTGCATTGCCAGAAGAGG 126
Query 208 AAGACATTGGAGACACCA-CCATAGGAGCTCCTCCT--CTTTGTCTGATTCCTTGTCCAG 264
||||||||||||||| | ||| | ||||| || | ||| ||||||||||||||| ||
Sbjct 127 AAGACATTGGAGACAT-AGCCACCGAAGCTCTTC-TGACTT-GTCTGATTCCTTGTCAAG 183
Query 265 CAAGAAACCAAAAAGCCATGAGAACAACCACCACCACA 302
|||||||||||| ||||||| ||| | ||||||||||
Sbjct 184 CAAGAAACCAAAGAGCCATGGGAATAGTCACCACCACA 221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74504519220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5