BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60800.1
Length=2573
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475252 jgi|Araly1|475252|fgenesh2_kg.2__382__AT1G60800.1 3297 0.0
> Ahg475252 jgi|Araly1|475252|fgenesh2_kg.2__382__AT1G60800.1
Length=2354
Score = 3297 bits (1785), Expect = 0.0
Identities = 2220/2415 (92%), Gaps = 89/2415 (4%)
Strand=Plus/Plus
Query 187 tctctatctctTGTCACAGCTCGTTTAGCATTCATTCTCTTAATCGTTTCTTCATTCAAA 246
||||||||||||||||| |||||||||||| ||||||||||||| | ||||| |||||
Sbjct 1 TCTCTATCTCTTGTCACTGCTCGTTTAGCACTCATTCTCTTAAT-G---CTTCAGTCAAA 56
Query 247 AATTCTCTCTTTCTAAGCTGAGTAACTTGCAAGTCGTCATTTTTCAATTGGGGTCTTCTC 306
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 57 AATTCTCTCTTTCTAAGCTGAGTGTCTTGCAAGTCGTCATTTTTCAATTTGGGTCTTCTT 116
Query 307 CTTTTTACT----TC------CT--TT-GAATTGAAATCACAGAG-AAAGAGAGGTTCCA 352
| ||||||| || | || |||||||||||| | || ||||||| ||||||
Sbjct 117 C-TTTTACTCCAGTCAAGAATTTGATTCGAATTGAAATCAGATAGAAAAGAGACGTTCCA 175
Query 353 TTGCTGGAAAATG-GATTGCTCAAA-T-TAGTTTCTGTGTCTAAATAAAGACAGAGAAGA 409
||||||| ||| | ||||||||||| | | ||| | ||||| ||||||||| || |||
Sbjct 176 TTGCTGG-AAA-GAGATTGCTCAAAGTGT-TTTTTTTTGTCTGAATAAAGAC--AG-AGA 229
Query 410 AGAAAAGTAGACAAAAGCTAAGtttttttttCAGATATGGGAGAGAGAAAAATGAGTTGG 469
|| | || || || |||||| ||||||||||||||||||||||||||||
Sbjct 230 AG---A--AG----AA---AA----TTTTTTAAGATATGGGAGAGAGAAAAATGAGTTGG 273
Query 470 TGGG-TTCTTTGAAACTTGTTTTTGTTCAGACCAAAGTTGATTGCTTTAAGAAGGGATAT 528
|||| ||| ||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct 274 TGGGTTTC-CTGAAACTTG-TTTT-TTCAGACCAAAGATGATTGCTTTAAGAAGGGATAT 330
Query 529 GGAAGGTGTGAGATTTGTGGTGTGGAGATTAGGATTTCTGGTTTTTGTATGGTT-CTTTG 587
|| | || || | |||| |||||||| ||||||||||| |||| ||| | |||
Sbjct 331 GG-A--TG-GA-A-----AGTGT-AAGATTAGGGTTTCTGGTTTTGGTATTGTTGC-TTG 378
Query 588 ATATCTCTTCTGCTACACTTTCTCCTACTGGTGTAAACTATGAAGTGACAGCTTTGGTTG 647
|| ||||| |||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 379 ATGTCTCTACTGCTACACTTTCTCCTACTGGTGTAAACTATGAAGTGACGGCTTTAGTGG 438
Query 648 CTGTGAAGAATGAATTGAATGATCCGTACAAAGTTCTTGAGAATTGGGATGTGAATTCAG 707
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 439 CTGTGAAGAATGAATTGAATGATCCGTACAATGTTCTTGAGAATTGGGATGTGAATTCAG 498
Query 708 TTGATCCTTGTAGCTGGAGAATGGTTTCTTGCACTGATGGCTATGTCTCTTCACTGGAT- 766
|||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| |
Sbjct 499 TTGATCCTTGTAGCTGGAGAATGGTTACTTGCACTGATGGCTATGTCTCTGGATTGG-TA 557
Query 767 CTTCCTAGCCAAAGCTTGTCTGGTACATTGTCTCCTAGAATCGGAAACCTCACCTATTTA 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 558 CTTCCTAGCCAAAGCTTGTCTGGTACATTGTCTCCTAGAATCGGAAACCTCACCTATCTA 617
Query 827 CAATCAGTGGTGTTGCAAAACAATGCAATCACTGGTCCAATTCCGGAAACGATTGGGAGG 886
|||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 618 GAATCTGTGTTGTTGCAAAACAATGCAATCACTGGTCCAATTCCCGAAACGATTGGGAGG 677
Query 887 TTGGAGAAGCTTCAGTCACTTGATCTTTCGAACAATTCATTCACCGGGGAGATACCGGCC 946
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 TTGGAGAAGCTTCAGACACTTGATCTTTCGAACAATTCATTCACCGGGGAGATACCGGCC 737
Query 947 TCACTTGGAGAACTCAAGAACTTGAATTACTTGCGGTTAAACAATAACAGTCTTATAGGA 1006
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 738 TCACTTGGAGAACTCAAGAACTTGAATTACTTGCGGTTAAACAATAACAGTCTTTTAGGA 797
Query 1007 ACTTGCCCTGAGTCTCTATCCAAGATTGAGGGACTCACTCTAGTCGACATTTCGTATAAC 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 ACTTGCCCTGAGTCTCTATCCAAGATTGAGGGACTCACTCTAGTCGACATTTCGTATAAC 857
Query 1067 AATCTTAGTGGTTCGCTGCCAAAAGTTTCTGCCAGAACTTTCAAGGTAATTGGTAATGCG 1126
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 AATCTTAGCGGTTCACTGCCAAAAGTTTCTGCCAGAACTTTCAAGGTAATTGGTAATGCA 917
Query 1127 TTAATCTGTGGCCCAAAAGCTGTTTCAAACTGTTCTGCTGT-T--CCCGAGCCTCTCACG 1183
|| ||||||||||||||||||||||||||||| |||||||| | |||||||| ||||||
Sbjct 918 TTGATCTGTGGCCCAAAAGCTGTTTCAAACTGCTCTGCTGTCTTTCCCGAGCCGCTCACG 977
Query 1184 CTTCCACAAGATGGTCCA---GATGAATCAGGAACTCGTACCAATGGCCATCACGTTGCT 1240
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 978 CTTCCACAAGATGGTCCACCAGATGAATCAGGAACTCGTACCAATGGCCATCACGTAGCT 1037
Query 1241 CTTGCATTTGCCGCAAGCTTCAGTGCAGCATTTTTTGTTTTCTTTACAAGCGGAATGTTT 1300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 CTTGCATTCGCCGCAAGCTTCAGTGCAGCATTTTTTGTTTTCTTTACAAGCGGAATGTTT 1097
Query 1301 CTTTGGTGGAGATATCGCCGTAACAAGCAAATATTTTTTGACGTTAATGAACAATATGAT 1360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 CTTTGGTGGAGATATCGGCGTAACAAGCAAATATTTTTTGACGTTAATGAACAATATGAT 1157
Query 1361 CCAGAAGTGAGTTTAGGGCACTTGAAGAGGTATACATTCAAAGAGCTTAGATCTGCCACC 1420
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1158 CCAGAAGTGAGTTTAGGGCACTTGAAGAGGTATACTTTCAAAGAGCTTAGATCTGCGACC 1217
Query 1421 AATCATTTCAACTCGAAGAACATTCTCGGAAGAGGCGGATACGGGATTGTGTACAAAGGA 1480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 AATCATTTCAACTCGAAAAACATTCTCGGAAGAGGCGGATACGGGATTGTGTACAAAGGA 1277
Query 1481 CACTTAAACGATGGAACTTTGGTGGCTGTCAAACGTCTCAAGGACTGTAACATTGCGGGT 1540
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 CACTTAAGCGATGGAACTTTGGTGGCTGTCAAACGTCTCAAGGACTGTAACATTGCGGGC 1337
Query 1541 GGAGAAGTCCAGTTTCAGACAGAAGTAGAGACTATAAGTTTGGCTCTTCATCGCAATCTC 1600
|| |||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 GGTGAAGTCCAATTCCAAACAGAAGTAGAGACTATAAGTTTGGCTCTTCATCGCAATCTC 1397
Query 1601 CTCCGGCTCCGCGGTTTCTGTAGTAGCAACCAGGAGAGAATTTTAGTCTACCCTTACATG 1660
||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1398 CTCAGGCTCCGTGGTTTCTGTAGTAGCAACCAGGAGAGAATCTTAGTCTACCCTTACATG 1457
Query 1661 CCAAATGGGAGTGTCGCATCACGCTTAAAAGATAATATCCGTGGAGAGCCAGCATTAGAC 1720
||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1458 CCAAATGGGAGCGTCGCATCACGCTTGAAAGATAATATCCGGGGAGAGCCAGCATTAGAC 1517
Query 1721 TGGTCGAGAAGGAAGAAGATAGCGGTTGGGACAGCGAGAGGACTAGTTTACCTACACGAG 1780
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1518 TGGTCGAGAAGGAAGAAGATAGCGGTTGGGACAGCTAGAGGACTAGTGTACCTACACGAG 1577
Query 1781 CAATGTGACCCGAAGATTATACACCGCGATGTGAAAGCAGCTAACATTCTGTTAGATGAG 1840
||||||||||| ||||| |||||||||||||||||||||||||||||| | || ||||||
Sbjct 1578 CAATGTGACCCAAAGATCATACACCGCGATGTGAAAGCAGCTAACATTTTATTGGATGAG 1637
Query 1841 GACTTCGAAGCAGTTGTTGGTGATTTTGGGTTAGCTAAGCTTCTAGACCATAGAGACTCT 1900
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1638 GACTTTGAGGCAGTTGTTGGTGATTTCGGGTTAGCTAAGCTTCTAGACCATAGAGACTCT 1697
Query 1901 CATGTCACAACTGCAGTCCGTGGAACTGTTGGCCACATTGCACCTGAGTACTTATCCACG 1960
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1698 CACGTCACAACTGCAGTCCGTGGAACCGTTGGCCACATTGCACCTGAGTACTTATCCACG 1757
Query 1961 GGTCAGTCCTCAGAGAAGACTGATGTCTTTGGCTTTGGCATACTTCTCCTTGAGCTCATT 2020
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1758 GGTCAGTCCTCTGAGAAGACTGATGTCTTTGGCTTTGGTATACTTCTCCTTGAGCTCATC 1817
Query 2021 ACTGGTCAGAAAGCTCTTGATTTTGGCAGATCCGCACACCAGAAAGGTGTAATGCTTGAC 2080
|||||||||||||| |||||||||||| ||||||| ||||| ||||| || |||||||||
Sbjct 1818 ACTGGTCAGAAAGCACTTGATTTTGGCCGATCCGCTCACCAAAAAGGCGTCATGCTTGAC 1877
Query 2081 TGGGTGAAGAAGCTGCACCAAGAAGGGAAACTAAAGCAGTTAATAGACAAAGATCTAAAT 2140
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1878 TGGGTGAAGAAGCTGCATCAAGAAGGGAAACTAAAGCAGTTGATAGACAAAGATCTAAAT 1937
Query 2141 GACAAGTTCGATAGAGTAGAACTCGAAGAAATCGTTCAAGTTGCGCTACTCTGCACTCAA 2200
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1938 GACAAGTTCGATAGAGTAGAACTCGAAGAAATCGTTCAAGTTGCGCTTCTCTGCACTCAA 1997
Query 2201 TTCAATCCATCTCATCGACCGAAAATGTCAGAAGTTATGAAGATGCTTGAAGGTGACGGT 2260
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1998 TTCAATCCATCTCATCGACCCAAAATGTCAGAAGTTATGAAAATGCTTGAAGGTGACGGC 2057
Query 2261 TTGGCTGAGAGATGGGAAGCGACGCAGAACGGTACTG-GTGAGCATCAGCCACCGCCATT 2319
||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||
Sbjct 2058 TTGGCTGAGAGATGGGAAGCGACGCAGAACGGTACTGCG-GAGAATCAGCCACCGCCATT 2116
Query 2320 GCCACCGGGGATGGTGAGTTCTTCGCCGCGTGTGAGGTATTACTCGGATTATATTCAGGA 2379
||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||
Sbjct 2117 GCCACCGGGGATGGTGAGTTCATCGCCGCGTGTAAGGTATTACTCCGATTATATCCAGGA 2176
Query 2380 ATCGTCTCTTGTAGTAGAAGCCATTGAGCTCTCGGGTCCTCGATGATTATGACTCACTgt 2439
||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||| |
Sbjct 2177 ATCGTCTCTTGTAGTAGAAGCCATTGAGCTCTCGGGTCCACGATGATTGTGATTCACT-T 2235
Query 2440 ttttaaaaaatttcttttcttgggtttgttttttatttgtcgttttATAATGTTGATATA 2499
|| ||||| ||| ||||||||||| |||||| ||||||||||||||||||
Sbjct 2236 TT-----------CTTTTATTGTGTTTGTTTTTTGTTTGTCTTTTTATAATGTTGATATA 2284
Query 2500 GATGTGAAGTTGAGTGTGTAATTTTT-ATGTAAAGAAAAAATATGAAATGCAAAAGAAAA 2558
||||||||||||||||| ||||||| ||||||| |||| | | |||||| ||||||||
Sbjct 2285 GATGTGAAGTTGAGTGT--AATTTTTTATGTAAA-AAAATAC-T-AAATGCGAAAGAAAA 2339
Query 2559 TGTTGATTAGCCTGC 2573
|||||||||||||||
Sbjct 2340 TGTTGATTAGCCTGC 2354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97015854015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5