BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60870.1
Length=1111
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924960 jgi|Araly1|924960|scaffold_200521.1 856 0.0
> Ahg924960 jgi|Araly1|924960|scaffold_200521.1
Length=561
Score = 856 bits (463), Expect = 0.0
Identities = 528/559 (94%), Gaps = 6/559 (1%)
Strand=Plus/Plus
Query 142 CATTATTGTCATCCACTTGTTGCAAAGTTCCACATTACAAGAATCATTCGATTCTCTTCT 201
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1 CATTATTGTCATCCACTTGTTCCAAAATTCCACATTACAAGAATCATTCGATTCTCTTCT 60
Query 202 ATCATCATCTTCTTCTTCTCCATCAAAATTCAC-CAAAACATGGAAGCTCTAATTCACCA 260
|||||||||||| |||||||| |||||||| | ||||||||||||||||||||||||
Sbjct 61 ATCATCATCTTC--GATCTCCATC-AAATTCACACCAAACATGGAAGCTCTAATTCACCA 117
Query 261 CTTCACTCTCCTCTCCGATCAAGCTCTTGTCGACAAAACATTCGACCCTTCAAGAATCGA 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CTTCACTCTCCTCTCCGATCAAGCTCTTGTCGACAAAACATTCGACCCTTCAAGAATCGA 177
Query 321 GGACCTCATGCGTCTCTTTGAAGTCGATTCATACAAAGCTTGGGCAGCTCTCGAATCCGA 380
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 178 AGACCTCATGCGTCTCTTCGAAGTCGATTCCTACAAAGCTTGGGCAGCTCTCGAATCTGA 237
Query 381 ACAGCAACAAGAACTCGAAGAAGCTGAAGAATCTCTCCGTGAAGCTGAACTTGAACTTGA 440
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||
Sbjct 238 GCAGCAACAAGAACTCGAAGAAGCTGAAGAAACTCTCCGTGAAGCTGAACTCGAACTCGA 297
Query 441 TCgggatatggagtgggggatggaggagtataggcggacgttggaggagatggagaggat 500
|||||||||||| ||||| ||||||||||| |||| |||||||||||||||||||||||
Sbjct 298 TCGGGATATGGAATGGGGAATGGAGGAGTACCGGCGAACGTTGGAGGAGATGGAGAGGAT 357
Query 501 ggaggcggcggagCTGAAAGAGCTTGAGGAGAAAGCGGAGACTGCTCGGAGAACGGGGAA 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 358 GGAGGCGGCGGAGCTGAAAGAGCTTGAGGAGAAAGCGGAGACTGCTCGGAGAACGGGAAA 417
Query 561 TTTAATGGAGAAAGCGGCGACAGTTGCCGCGAAACGACATATTGCGGCGGCGATGGGATC 620
||||||||||||||| |||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct 418 TTTAATGGAGAAAGCCGCGACAATTGCCGCGAAACGGCATATTGCAGCGGCGATGGGATC 477
Query 621 AGCCGCCGCGTCTATGAGATCAGCTTGGAAGACTGCAGCTGGAAATAAGGTTCATCCATC 680
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 478 AGCCGCTGCGTCTATGAGATCAGCTTGGAAGACTGCAGCTGGGAATAAGGTTCATCCATC 537
Query 681 Ttgatcgatga-tgatgat 698
||||||||||| | |||||
Sbjct 538 TTGATCGATGAAT-ATGAT 555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41401487862
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5