BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G60940.1 Length=1655 Score E Sequences producing significant alignments: (Bits) Value Ahg475237 jgi|Araly1|475237|fgenesh2_kg.2__367__AT1G60940.1 1993 0.0 Ahg919903 jgi|Araly1|919903|scaffold_101184.1 1149 0.0 > Ahg475237 jgi|Araly1|475237|fgenesh2_kg.2__367__AT1G60940.1 Length=1585 Score = 1993 bits (1079), Expect = 0.0 Identities = 1374/1504 (91%), Gaps = 69/1504 (5%) Strand=Plus/Plus Query 1 AAGAGCCATCGTGACTTCGAGAGAAGAAGCCAGCAAGGAACGATGGAGATTATTACGGca 60 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1 AAGAGCCATCGTGACTTCGTGAGAAGAAGCCAGCAAGGAACGATGGAGATTATTACGG-- 58 Query 61 tcatcatcatcatcatcatcatTGTAATTCGTAATCATATCTTCTTTTGGAATTTCTTCA 120 |||||||||||||||||||| || | || | || || || ||||||||||| Sbjct 59 -------CATCATCATCATCATTGTAA-TC-T--TC-T-TC-TC--TTAGAATTTCTTCA 102 Query 121 CGGATAAGAAAAAAGGATATCGACAATTTCGCTTTTGCTTTC-AAAA-TCTCATTCTATC 178 |||||||||||||||||||||||||||||||||||||||||| |||| || |||| | || Sbjct 103 CGGATAAGAAAAAAGGATATCGACAATTTCGCTTTTGCTTTCAAAAATTC-CATT-T-TC 159 Query 179 ACTTTG-TGCCTTTTTTAGCCATCGCGAAAAACCTCTGAATCGCATCCCTTGATTTTCTG 237 |||||| | ||||||||| | |||||||||||||||| |||||| |||||| | |||||| Sbjct 160 ACTTTGTTCCCTTTTTTAACAATCGCGAAAAACCTCTAAATCGCTTCCCTTCAATTTCTG 219 Query 238 GGTTTGTGACTTTGTGTA-GTGGA-A-ATTAGGCTTGTTGTTTGAT-TTCG-CTACGAGA 292 ||||| | | ||| | | |||| | || || ||||||| | || | ||| ||| Sbjct 220 GGTTT-TCAATTT-T-CACTTGGAGATTTTGGGGGAATTGTTTG-TGTT-GTTTACAAGA 274 Query 293 AAATGGACAAGTACGAGCTTGTTAAAGACATCGGTGCTGGGAATTTTGGAGTGGCGAGGC 352 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 275 AAATGGACAAGTACGAGCTTGTTAAAGACATCGGTGCTGGGAATTTTGGAGTGGCTAGGC 334 Query 353 TCATGAGAGTCAAAAACTCCAAGGAACTCGTTGCTATGAAGTACATCGAGCGTGGACCTA 412 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| || | Sbjct 335 TCATGAGAGTCAAAAACTCCAAAGAACTCGTTGCTATGAAGTACATCGAGCGTGGCCCAA 394 Query 413 AGATTGATGAGAACGTGGCGAGAGAGATTATTAACCACAGATCACTTCGTCATCCCAATA 472 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 395 AGATTGATGAGAACGTGGCGAGAGAGATTATTAATCATAGATCACTTCGTCATCCCAATA 454 Query 473 TTATCCGGTTTAAGGAGGTGGTTTTGACACCAACGCACATCGCCATTGCTATGGAATATG 532 | |||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 455 TAATCCGGTTTAAGGAGGTGGTTTTGACACCAACACACATCGCCATTGCTATGGAATTTG 514 Query 533 CTGCTGGCGGTGAGCTATTTGAGCGTATATGTAGCGCTGGAAGATTCAGTGAGGATGAGG 592 |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 515 CTGCTGGCGGTGAGTTATTTGAGCGTATATGTAGTGCTGGAAGATTCAGTGAGGATGAGG 574 Query 593 CAAGATACTTTTTCCAGCAGCTTATCTCAGGAGTCAGCTATTGTCATGCTATGCAAATAT 652 ||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||| Sbjct 575 CAAGATACTTTTTCCAGCAGCTTATATCTGGAGTCAGCTATTGCCATGCTATGCAAATAT 634 Query 653 GCCACAGAGATCTGAAGCTTGAAAATACCCTCTTAGATGGAAGTCCTGCTCCACGCCTGA 712 |||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 635 GCCATAGAGATCTGAAGCTCGAAAATACCCTCTTGGATGGAAGTCCTGCTCCACGCCTGA 694 Query 713 AGATCTGTGATTTTGGTTATTCCAAGTCCTCACTGTTGCACTCTATGCCCAAATCAACTG 772 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 695 AAATCTGTGATTTTGGTTATTCCAAGTCCTCACTGTTGCACTCTATGCCCAAATCAACTG 754 Query 773 TTGGAACTCCAGCATATATTGCACCTGAGGTTCTTTCTCGCGGAGAGTATGATGGCAAGA 832 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 755 TTGGAACTCCAGCATATATTGCACCTGAGGTTCTTTCTCGCGGAGAGTATGATGGCAAGA 814 Query 833 TGGCTGATGTATGGTCTTGTGGTGTGACTCTTTATGTCATGCTGGTGGGAGCATACCCAT 892 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 815 TGGCTGATGTATGGTCTTGTGGTGTGACTCTTTATGTCATGCTGGTGGGAGCATACCCAT 874 Query 893 TTGAAGACCAAGAGGATCCCAAAAACTTCaaaaaaaCAATACAAAGAATAATGGCTGTCA 952 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 875 TTGAAGACCAAGAGGATCCTAAAAACTTCAAAAAAACAATACAAAGAATAATGGCTGTCA 934 Query 953 AGTACAAGATCCCGGACTATGTCCATATCTCACAAGATTGCAAACATCTCCTCTCCCGTA 1012 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 935 AGTACAAGATCCCGGACTATGTCCATATCTCACAAGATTGCAAACATCTCCTCTCCCGTA 994 Query 1013 TATTTGTCACCAACTCGAATAAGAGGATTACGATAGGTGACATCAAGAAACATCCATGGT 1072 |||||||| ||||||||||||||||||||| ||||| ||| ||||||||||||||||||| Sbjct 995 TATTTGTCGCCAACTCGAATAAGAGGATTAAGATAGCTGAGATCAAGAAACATCCATGGT 1054 Query 1073 TCCTAAAGAACCTGCCAAGGGAACTTACAGAAATAGCTCAAGCTGCATACTTCAGGAAAG 1132 ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| Sbjct 1055 TCCTAAAGAACCTGCCAAGGGAACTTACAGAAACAGCTCAAGCTGTATACTTCAGTAAAG 1114 Query 1133 AGAACCCGACATTCTCACTCCAAAGCGTCGAAGAGATAATGAAGATTGTGGAAGAGGCAA 1192 |||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| Sbjct 1115 AGAACCCGACATTCTCGCTCCAAAGTGTCGAAGAGATCATGAAGATTGTGGAAGAGGCAA 1174 Query 1193 AAACTCCAGCTCGTGTTTCTCGGTCGATTGGAGCATTTGGGTGGGGAGGaggagaagatg 1252 |||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||| Sbjct 1175 AAACTCCAGCTCCTGTTTCTCGATCGATTGGAGCATTTGGGTGGGGAGGAGAAGAAGATG 1234 Query 1253 ccgagggcaaggaggaagatgcagaggaagaagttgaggaagtagaagaagaagaagacg 1312 ||||||||| ||||||||| | | ||||||||||||||||||| Sbjct 1235 CCGAGGGCATGGAGGAAGA-G--G---------TTGAGGAAGTAGAAGAAGA-------- 1274 Query 1313 aagaagaTGAGTATGATAAGACGGTGAAGCAAGTGCATGCTAGCATGGGAGAAGTCCGAG 1372 ||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1275 -------TGAGTATGATAAGACAGTGAAGCAAGTGCATGCTAGCATGGGAGAAGTCCGAG 1327 Query 1373 TCAGTTaaaa-a-aa-a-a-GATTGATTTTCTTTTCACGAAAGTATTCTAAAACCaaaaa 1427 |||||||||| | || | | ||||| |||| |||||| |||||| ||||||||||||||| Sbjct 1328 TCAGTTAAAACACAATATAAGATTGGTTTTGTTTTCAAGAAAGTTTTCTAAAACCAAAAA 1387 Query 1428 aaaaagaaaaaaaaG-TTTTCGTTGGTCTGTCGAATTTGTCTCTTGCTCTGTGTTGAGTT 1486 |||| |||| ||||| |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1388 AAAA-GAAAGAAAAGGTTTTCGTTGGTCTGTCGAATTTGTCTCTTGCTCTCTGTTGAGTT 1446 Query 1487 CTTA 1490 ||| Sbjct 1447 -TTA 1449 > Ahg919903 jgi|Araly1|919903|scaffold_101184.1 Length=1137 Score = 1149 bits (622), Expect = 0.0 Identities = 942/1094 (86%), Gaps = 31/1094 (3%) Strand=Plus/Plus Query 294 AATGGACAAGTACGAGCTTGTTAAAGACATCGGTGCTGGGAATTTTGGAGTGGCGAGGCT 353 |||||||||||||||||| || |||||||| |||||||||||||| |||||||| ||||| Sbjct 22 AATGGACAAGTACGAGCTGGTGAAAGACATAGGTGCTGGGAATTTCGGAGTGGCCAGGCT 81 Query 354 CATG-AGAGTCAAAAACTCCAAGGAACTCGTTGCTATGAAGTACATCGAGCGTGGACCTA 412 |||| || ||||||||||| |||||||| ||||| |||||||||||||||||||| |||| Sbjct 82 CATGAAG-GTCAAAAACTCTAAGGAACTTGTTGCCATGAAGTACATCGAGCGTGGTCCTA 140 Query 413 AGATTGATGAGAACGTGGCGAGAGAGATTATTAACCACAGATCACTTCGTCATCCCAATA 472 ||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 141 AGATTGATGAGAACGTGGCAAGAGAGATCATTAATCACAGATCACTTCGCCATCCGAATA 200 Query 473 TTATCCGGTTTAAGGAGGTGGTTTTGACACCAACGCACATC--GCCATTGCTATGGAATA 530 | ||||||||||||||||| || ||||| ||||| | |||| ||||||||||||||||| Sbjct 201 TAATCCGGTTTAAGGAGGTTGTGTTGACTCCAAC-C-CATCTTGCCATTGCTATGGAATA 258 Query 531 TGCTGCTGGCGGTGAGCTATTTGAGCGTATATGTAGCGCTGGAAGATTCAGTGAGGATGA 590 ||||||||| ||||| ||||| |||||||| || || ||||||||||| ||||| ||||| Sbjct 259 TGCTGCTGGTGGTGAACTATTCGAGCGTATCTGCAGTGCTGGAAGATTTAGTGAAGATGA 318 Query 591 GGCAAGATACTTTTTCCAGCAGCTTATCTCAGGAGTCAGCTATTGTCATGCTATGCAAAT 650 ||| |||||||| ||||| || ||||| ||||| || || ||||| |||||||||||||| Sbjct 319 GGCGAGATACTTCTTCCAACAACTTATATCAGGTGTTAGTTATTGCCATGCTATGCAAAT 378 Query 651 ATGCCACAGAGATCTGAAGCTTGAAAATACCCTCTTAGATGGAAGTCCTGCTCCACGCCT 710 ||||||||||||||||||||| || ||||| ||| | |||||||||||||||||||| || Sbjct 379 ATGCCACAGAGATCTGAAGCTCGAGAATACGCTCCTGGATGGAAGTCCTGCTCCACGTCT 438 Query 711 GAAGATCTGTGATTTTGGTTATTCCAAGTCCTCACTGTTGCACTCTATGCCCAAATCAAC 770 ||| ||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||| Sbjct 439 GAAAATCTGTGATTTTGGTTATTCCAAGTCCTCTCTGCTGCACTCTAGGCCCAAATCAAC 498 Query 771 TGTTGGAACTCCAGCATATATTGCACCTGAGGTTCTTTCTCGCG-GAGAGTATGATGGCA 829 |||||||||||||| ||||||||||||||||| |||||||| | |||| |||||||||| Sbjct 499 AGTTGGAACTCCAGCGTATATTGCACCTGAGGTCCTTTCTCG-GAGAGAATATGATGGCA 557 Query 830 AGATGGCTGATGTATGGTCTTGTGGTGTGACTCTTTATGTCATGCTGGTGGGAGCATACC 889 ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| Sbjct 558 AGATGGCTGATGTATGGTCCTGTGGTGTGACTCTTTATGTCATGCTGGTTGGAGCGTACC 617 Query 890 CATTTGAAGACCAAGAGGATCCCAAAAACTTCaaaaaaaCAATACAAAGAATAATGGCTG 949 ||||||||||||| || || ||||||||||||| ||||||||||||| ||||||||||| Sbjct 618 CATTTGAAGACCAGGAAGACCCCAAAAACTTCAGGAAAACAATACAAAAAATAATGGCTG 677 Query 950 TCAAGTACAAGATCCCGGACTATGTCCATATCTCACAAGATTGCAAACATCTCCTCTCCC 1009 || ||||||||||||||||||| ||||| |||||||| ||||| ||||||||||| |||| Sbjct 678 TCCAGTACAAGATCCCGGACTACGTCCACATCTCACAGGATTGTAAACATCTCCTTTCCC 737 Query 1010 GTATATTTGTCACCAACTCGAAT-AAGAGGATTACGATAGGTGACATCAAGAAACATCCA 1068 ||||||||||| |||| || | | |||||||| || || | || ||||||||||| ||| Sbjct 738 GTATATTTGTCGCCAATTC-ACTCAAGAGGATAACCATTGCAGAAATCAAGAAACACCCA 796 Query 1069 TGGTTCCTAAAGAACCTGCCAAGGGAACTTACAGAAATAGCTCAAGCTGCATACTTCAGG 1128 |||||||| ||||| ||||||| ||||| ||||| | ||||||||||||||| |||| | Sbjct 797 TGGTTCCTGAAGAATTTGCCAAGAGAACTCACAGAGACAGCTCAAGCTGCATATTTCAAG 856 Query 1129 AAAGAGAACCCGACATTCTCACTCCAAAGC-GTCGAAGAGATAATGAAGATTGTGGAAGA 1187 ||||||||||| || ||||| ||||| | | || |||||||| |||||||| |||| || Sbjct 857 AAAGAGAACCCAACCTTCTCCCTCCAGA-CTGTTGAAGAGATCATGAAGATAGTGGCTGA 915 Query 1188 GGCAAAAACTCCAGC-TCGTGTTTCTCGGTCGATTGGAGCATTTGGGTGGGGAGGagga- 1245 || ||||| || || || |||||| ||||| || |||| ||||| ||||||||| | Sbjct 916 CGCCAAAACACC-GCCTCCTGTTTCCCGGTCCATCGGAGGTTTTGGCTGGGGAGGAA-AT 973 Query 1246 gaagatgccgagggcaaggaggaagatgcaga-g--g---a--ag-aagttgagga--ag 1294 | ||||| ||||| ||||||||||||||||| | | | || ||| ||||| || Sbjct 974 GGAGATGTAGAGGGAAAGGAGGAAGATGCAGAAGACGTGGAGGAGGAAGAGGAGGAGGAG 1033 Query 1295 -tagaagaagaagaagacgaagaagaTGAGTATGATAAGACGGTGAAGCAAGTGCATGCT 1353 | |||||||| |||||||| || ||||| || |||||||| || ||| |||| || || Sbjct 1034 GTGGAAGAAGAGGAAGACGATGAGGATGAATACGATAAGACTGTAAAGGAAGTACACGCA 1093 Query 1354 AGCATGGGAGAAGT 1367 || ||| |||||| Sbjct 1094 AG--TGG-AGAAGT 1104 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62049009105 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5