BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G60950.1 Length=833 Score E Sequences producing significant alignments: (Bits) Value Ahg924950 jgi|Araly1|924950|scaffold_200511.1 822 0.0 > Ahg924950 jgi|Araly1|924950|scaffold_200511.1 Length=511 Score = 822 bits (445), Expect = 0.0 Identities = 484/503 (96%), Gaps = 1/503 (0%) Strand=Plus/Plus Query 131 CTCAAAAATCTCAACTTTATCTCCCaaaacacaaaacaaaaaaaaaTGGCTTCCACTGCT 190 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1 CTCAAAAATCTCAACTTTATCTCCCAAAACACAAAAC-CAAAAAAATGGCTTCCACTGCT 59 Query 191 CTCTCAAGCGCCATCGTCGGAACTTCATTCATCCGTCGTTCCCCAGCTCCAATCAGTCTC 250 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 60 CTCTCAAGCGCCATCGTCGGAACTTCATTCATCCGTCGTTCCCCAGCTCCCATCAGTCTC 119 Query 251 CGTTCCCTTCCATCAGCCAACACACAATCCCTCTTCGGTCTCAAATCAGGCACCGCTCGT 310 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 120 CGTTCCCTTCCATCAGCCAACACACAATCCCTATTCGGTCTCAAATCAGGCACCGCTCGT 179 Query 311 GGTGGACGTGTCACAGCCATGGCTACATACAAGGTCAAGTTCATCACACCAGAAGGTGAG 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 GGTGGACGTGTCACAGCCATGGCTACATACAAGGTCAAGTTCATCACACCAGAAGGTGAG 239 Query 371 CTAGAGGTTGAGTGTGACGACGACGTCTACGTTCTTGATGCTGCTGAGGAAGCTGGAATC 430 | |||| |||||||||| |||||||| ||||||||||| || || ||||||||||||||| Sbjct 240 CAAGAGATTGAGTGTGAAGACGACGTTTACGTTCTTGACGCGGCCGAGGAAGCTGGAATC 299 Query 431 GATTTGCCTTACTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCT 490 |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 300 GATTTGCCATACTCTTGTCGTGCTGGTTCTTGTTCAAGCTGTGCTGGTAAAGTTGTGTCT 359 Query 491 GGATCTGTTGATCAGTCTGACCAGAGTTTCCTTGATGATGAACAGATTGGTGAAGGGTTT 550 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 360 GGATCTGTTGATCAGTCTGACCAAAGTTTCCTTGATGATGAACAGATTGGTGAAGGGTTT 419 Query 551 GTTCTCACTTGTGCTGCTTACCCTACCTCTGATGTTACCATTGAAACCCACAAAGAAGAA 610 |||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||| Sbjct 420 GTTCTCACTTGTGCTGCTTATCCTACTTCTGATGTTACCATTGAAACTCACAAAGAAGAA 479 Query 611 GACATTGTTTAAGCCTCACCTAC 633 |||||||||||||| |||||||| Sbjct 480 GACATTGTTTAAGCTTCACCTAC 502 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30803316936 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5