BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G60950.1

Length=833
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg924950 jgi|Araly1|924950|scaffold_200511.1                        822    0.0  


> Ahg924950 jgi|Araly1|924950|scaffold_200511.1
Length=511

 Score =  822 bits (445),  Expect = 0.0
 Identities = 484/503 (96%), Gaps = 1/503 (0%)
 Strand=Plus/Plus

Query  131  CTCAAAAATCTCAACTTTATCTCCCaaaacacaaaacaaaaaaaaaTGGCTTCCACTGCT  190
            |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct  1    CTCAAAAATCTCAACTTTATCTCCCAAAACACAAAAC-CAAAAAAATGGCTTCCACTGCT  59

Query  191  CTCTCAAGCGCCATCGTCGGAACTTCATTCATCCGTCGTTCCCCAGCTCCAATCAGTCTC  250
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  60   CTCTCAAGCGCCATCGTCGGAACTTCATTCATCCGTCGTTCCCCAGCTCCCATCAGTCTC  119

Query  251  CGTTCCCTTCCATCAGCCAACACACAATCCCTCTTCGGTCTCAAATCAGGCACCGCTCGT  310
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  120  CGTTCCCTTCCATCAGCCAACACACAATCCCTATTCGGTCTCAAATCAGGCACCGCTCGT  179

Query  311  GGTGGACGTGTCACAGCCATGGCTACATACAAGGTCAAGTTCATCACACCAGAAGGTGAG  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  GGTGGACGTGTCACAGCCATGGCTACATACAAGGTCAAGTTCATCACACCAGAAGGTGAG  239

Query  371  CTAGAGGTTGAGTGTGACGACGACGTCTACGTTCTTGATGCTGCTGAGGAAGCTGGAATC  430
            | |||| |||||||||| |||||||| ||||||||||| || || |||||||||||||||
Sbjct  240  CAAGAGATTGAGTGTGAAGACGACGTTTACGTTCTTGACGCGGCCGAGGAAGCTGGAATC  299

Query  431  GATTTGCCTTACTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCT  490
            |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct  300  GATTTGCCATACTCTTGTCGTGCTGGTTCTTGTTCAAGCTGTGCTGGTAAAGTTGTGTCT  359

Query  491  GGATCTGTTGATCAGTCTGACCAGAGTTTCCTTGATGATGAACAGATTGGTGAAGGGTTT  550
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  360  GGATCTGTTGATCAGTCTGACCAAAGTTTCCTTGATGATGAACAGATTGGTGAAGGGTTT  419

Query  551  GTTCTCACTTGTGCTGCTTACCCTACCTCTGATGTTACCATTGAAACCCACAAAGAAGAA  610
            |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct  420  GTTCTCACTTGTGCTGCTTATCCTACTTCTGATGTTACCATTGAAACTCACAAAGAAGAA  479

Query  611  GACATTGTTTAAGCCTCACCTAC  633
            |||||||||||||| ||||||||
Sbjct  480  GACATTGTTTAAGCTTCACCTAC  502



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30803316936


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5