BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60960.1
Length=1532
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315258 jgi|Araly1|315258|fgenesh1_pm.C_scaffold_2000291 1901 0.0
Ahg919906 jgi|Araly1|919906|scaffold_101187.1 913 0.0
> Ahg315258 jgi|Araly1|315258|fgenesh1_pm.C_scaffold_2000291
Length=1290
Score = 1901 bits (1029), Expect = 0.0
Identities = 1206/1291 (93%), Gaps = 14/1291 (1%)
Strand=Plus/Plus
Query 155 ATGTTCTTCGTCGATGTTCTTTGGAAACTGGTTCCTCTATACTTGTTCGGATCAGAAACA 214
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTCTTCATCGATGTTCTTTGGAAATTGGTTCCTCTATACTTGTTCGGATCAGAAACA 60
Query 215 AAGTCTCTCTCAGCAACAGAGTCCATTTTGCAGATAGTTCCTGAGGCAATGGCTGCTACT 274
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 GATTCTCTCTCAGCAACAGAGTCCATTTTGCAGATAGTTCCAGAGGCAATGGCTGCTACT 120
Query 275 TCATCTAACGTCCTTTGCAATGCTAGCGAGTCAGATCTTTGTCGTGATGATTCCGCTGCA 334
|||||||| || || |||||||||| ||||||||| ||||| |||||||||||||||||
Sbjct 121 TCATCTAATGTTCTATGCAATGCTAACGAGTCAGACCTTTGCCGTGATGATTCCGCTGCG 180
Query 335 TTTCTACTTAAATTTGTAGCCATTGCTTCGATTCTCTTAGCTGGAGCTGCTGGTGTAACT 394
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 181 TTTCTACTTAAATTTGTAGCCATTGCTTCTATTCTATTAGCTGGAGCTGCAGGTGTAACT 240
Query 395 ATACCACTCATTGGCAGGAACCGTCGTTTCCTTCAAACTGATGGTAATCTCTTTGTGACT 454
|||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||
Sbjct 241 ATACCACTCATTGGCAGGAACCGTCGGTTCCTTCAAACCGATAGTAATCTCTTTGTGACT 300
Query 455 GCTAAAGCTTTTGCAGCTGGTGTGATTCTCGCCACGGGTTTTGTTCATATGTTGGCGGGT 514
|||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 301 GCTAAAGCCTTTGCAGCTGGTGTGATCCTTGCCACGGGTTTTGTTCATATGTTGGCTGGT 360
Query 515 GGCACGGAAGCTTTGAAGAACCCGTGCTTACCGGATTTCCCTTGGTCTAAGTTTCCTTTC 574
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 GGCACGGAAGCTTTGAAGAACCCGTGCTTACCGGATTTCCCTTGGTCTAAGTTTCCGTTC 420
Query 575 CCGGGATTCTTTGCGATGATTGCTGCTTTGATCACTCTGTTTGTGGATTTCATGGGGACT 634
||||| |||||||||||| |||| ||| ||||||||||||||||||| ||| |||||||
Sbjct 421 CCGGGGTTCTTTGCGATGGTTGCAGCTCTGATCACTCTGTTTGTGGAATTCTTGGGGACG 480
Query 635 CAGTACTATGAACGGAAGCAAGAGAGGGAAGCTAGTGAGTCTGTTGAACCGTTTGGCCGT 694
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 CAGTACTATGAACGGAAGCAAGAGAGGGAAGCTAGTGAGTCTGTTGAACCGTCTGGCCGT 540
Query 695 GAACAATCACCGGGTATTGTTGTTCCCATGATTGGAGAAGGAACGAATGATGGGAAAGTG 754
||||||||||||||||||||||||||| || ||| ||||||||||||||||| |||||||
Sbjct 541 GAACAATCACCGGGTATTGTTGTTCCCTTGGTTGCAGAAGGAACGAATGATGAGAAAGTG 600
Query 755 TTTGGTGAAGAAGACAGTGGTGGGATTCACATTGTTGGCATTCATGCTCATGCTGCTCAT 814
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTTGGAGAAGAAGACAGTGGTGGGATTCACATTGTTGGCATTCATGCTCATGCTGCTCAT 660
Query 815 CATAGACATAGTCATCCTCCTGGTCATGATTCATGTGAAGGACACAGTAAAATCGACATT 874
|||||||||||||| ||||||||||||| ||||||||||||||||||| |||| ||||||
Sbjct 661 CATAGACATAGTCACCCTCCTGGTCATGGTTCATGTGAAGGACACAGTGAAATTGACATT 720
Query 875 GGTCATGCTCATGCTCATGGGCACGGGCATGGACACGGACATGGACACGT--AC--AC-- 928
|| |||||||||| || ||||||||||||||||| ||||||||||||| || ||
Sbjct 721 GGGCATGCTCATGGACACGGGCACGGGCATGGACATGGACATGGACACGGGCACGGACAC 780
Query 929 G-----GGGGTT-TGGATGCTGTTAA-TGGAGCTAGGCATATCGTTGTTTCTCAGGTTCT 981
| |||| | ||||||| | || |||||||||||||||||||||||||||||||||
Sbjct 781 GCACACGGGGGTGTGGATGCCGG-AAGTGGAGCTAGGCATATCGTTGTTTCTCAGGTTCT 839
Query 982 GGAGCTTGGAATTGTGTCACATTCCATAATCATCGGTCTATCCCTTGGAGTATCTCAGTC 1041
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GGAGCTTGGAATCGTGTCACATTCCATAATCATCGGTCTATCCCTTGGAGTATCTCAGTC 899
Query 1042 TCCTTGCACAATCCGGCCTCTAATCGCAGCACTATCCTTCCATCAATTCTTTGAAGGATT 1101
|||||| |||||||||||| |||| ||||||||||||||||| |||||||||||||||||
Sbjct 900 TCCTTGTACAATCCGGCCTTTAATTGCAGCACTATCCTTCCACCAATTCTTTGAAGGATT 959
Query 1102 TGCGCTCGGTGGATGCATCTCCCAAGCGCAATTCAGGAACAAATCAGCGACCATAATGGC 1161
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 960 TGCGCTCGGTGGATGCATCTCCCAAGCGCAATTCAGGAACAAATCAGCAACCATAATGGC 1019
Query 1162 TTGTTTTTTCGCCCTCACAACCCCGATAGGGATCGGGATTGGAACCGCAGTGGCGTCGTC 1221
|||||||||||||||||||| |||||||||||| |||||||||||||||||||| || ||
Sbjct 1020 TTGTTTTTTCGCCCTCACAAGCCCGATAGGGATAGGGATTGGAACCGCAGTGGCATCCTC 1079
Query 1222 TTTCAATTCTCACAGTGTCGGAGCATTGGTCACTGAAGGTATCTTGGACTCGCTCTCAGC 1281
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ATTCAATTCTCACAGCGTCGGAGCATTGGTCACTGAAGGTATCTTGGACTCGCTCTCAGC 1139
Query 1282 CGGAATTCTTGTGTACATGGCTTTAGTGGATCTCATAGCTGCTGATTTCTTGAGTACAAA 1341
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1140 CGGAATTCTTGTTTACATGGCTTTGGTGGATCTCATAGCTGCTGATTTCTTGAGTACAAA 1199
Query 1342 AATGAGGTGTAACTTTAGGCTTCAAATTGTATCTTATGTAATGTTGTTCCTAGGAGCTGG 1401
|||||| || |||||||||||||| || |||||||| ||||||||||||| ||||||||
Sbjct 1200 AATGAGCTGCAACTTTAGGCTTCAGATAGTATCTTACATAATGTTGTTCCTGGGAGCTGG 1259
Query 1402 ACTCATGTCTTCTCTTGCCATTTGGGCTTAA 1432
|||||||||||| ||||||||||||||||||
Sbjct 1260 ACTCATGTCTTCCCTTGCCATTTGGGCTTAA 1290
> Ahg919906 jgi|Araly1|919906|scaffold_101187.1
Length=1293
Score = 913 bits (494), Expect = 0.0
Identities = 1053/1309 (80%), Gaps = 94/1309 (7%)
Strand=Plus/Plus
Query 155 ATGTTCTTCGTCGATGTTCTTTGGAAACTGGTTCCTCTATACTTGTTCGGATCAGAAACA 214
||| || ||||||||||||||||||||||| |||||||||||| ||| |||||||||| |
Sbjct 25 ATGATCATCGTCGATGTTCTTTGGAAACTGTTTCCTCTATACTCGTTTGGATCAGAAAGA 84
Query 215 AAGTCTCTCTCAGCAACAGAGTCCATTTTGCAGATAGTTCCTGAGGCAATGGCTGCTACT 274
| | ||||| | |||||||||||||||||||| |||| ||| |||||||| || ||
Sbjct 85 GA-T-TCTCT---C-TCAGAGTCCATTTTGCAGATAATTCCCGAGACAATGGCTTCTTCT 138
Query 275 -TCATCTAACGTCCTTTGCAATGCTAGCGAGTCAGATCTTTGTCGTGATGATTCCGCTGC 333
|| |||| |||| || |||| | || ||||| || ||| | || ||||| |||||
Sbjct 139 ACCA-CTAAAATCCTCTGTGATGCCGGTGATTCAGACCTCTGTAGAGACGATTCAGCTGC 197
Query 334 ATTTCTACTTAAATTTGTAGCCATTGCTTCGATTCT-CTTAGCTGGAGCTGCTGGTGTAA 392
|||||| || ||||||||||||||||| || ||||| | ||||||||||||||||||||
Sbjct 198 ATTTCTGCTCAAATTTGTAGCCATTGCCTCCATTCTAC-TAGCTGGAGCTGCTGGTGTAG 256
Query 393 CTATACCACTCATTGGCAGGAACCGTC-GTTTCCTTCAAACTGATGGTAATCTCTTTGTG 451
| ||||| ||||||||||||||||||| |||| ||||||||||| || |||||||||||
Sbjct 257 CCATACCTCTCATTGGCAGGAACCGTCGGTTT-CTTCAAACTGAGGGAAATCTCTTTGT- 314
Query 452 A-CTGCTAAAGCTTTTGCAGCTGGTGTGATTCTCGCCACGGGTTTTGTTCATATG-TTGG 509
| |||||||||| |||||||||||||| || |||||||| || ||||| |||||| || |
Sbjct 315 AGCTGCTAAAGCCTTTGCAGCTGGTGTCATACTCGCCACTGGATTTGTCCATATGCTT-G 373
Query 510 CGGGTGGCACGGAAGCTTTGAAG-AACCCGTGCTTACCGGATT-TCCCTTGGTCTAAGTT 567
| || |||||||||||| || || || ||||| |||||||||| | || |||||||||||
Sbjct 374 CAGGCGGCACGGAAGCTCTG-AGTAATCCGTGTTTACCGGATTAT-CCGTGGTCTAAGTT 431
Query 568 T-CCTTTCCCGGGATTCTTTGCGATGATTGCTGCTTTGA-TCACTCTGTTTGTGGATTTC 625
| |||||||| || |||||||| ||| | |||||||| | | |||||| |||||||||||
Sbjct 432 TCCCTTTCCC-GGTTTCTTTGCTATGGTGGCTGCTTT-AGTTACTCTGCTTGTGGATTTC 489
Query 626 ATGGGGACTCAGTACTATGA-ACGGAAGCAAGAGAGGGA--AG-CT---AGTGA----G- 673
|||||||||||||||||||| | |||||||||||||| | || || ||||| |
Sbjct 490 ATGGGGACTCAGTACTATGAGA-GGAAGCAAGAGAGGAATCAGGCTGCTAGTGAAACCGC 548
Query 674 TCT-GTTGAACCGTTTGGCCGTGAACAATCACCGGGTATTGTTGTTCCCATGATTGGAGA 732
| | ||||| || | || |||||| | || | | ||||||||| || |||| ||
Sbjct 549 TGTTGTTGAGCC-T--GGTCGTGAAGAG--ACTGC-T---GTTGTTCCCGTGGTTGGGGA 599
Query 733 A-G-G--AACGAATGATGGGAAAGTGTTTGGTGAAGAAGACAGTGGTGGGATTCACATTG 788
| | | ||||| | || ||||| ||||||||||||||| ||||||||||||||||||
Sbjct 600 AAGTGTCAACGA-TAAT---AAAGTATTTGGTGAAGAAGACGGTGGTGGGATTCACATTG 655
Query 789 TTGGCATTCATGCTCATGCTGCTCATCATAGACATAGTCATCCTCCTGGTCATGATTCAT 848
||||||||||||||||||||||||| ||||| || ||||| | || | | | | |||
Sbjct 656 TTGGCATTCATGCTCATGCTGCTCACCATAGGCACAGTCA-C-TC-TAAT-A-GC--CAT 708
Query 849 GTGAAGGACACAGTAAAATCGACATTGGTCATGCTCATGCTCATGGGCACGGGCATGGAC 908
| | | || || | | ||||| | ||||| ||| ||| ||||| |||||||
Sbjct 709 G-GTA---CAT-GTGA--TGGACAT-GCTCATGGACAT--TCA----CACGGACATGGAC 754
Query 909 ACGGACATGGACACGTACACGGGGGTTTGGATGCTGTTAATGGAGCTAGGCATATCGTTG 968
| ||||||| | |||||| || |||| || ||||||||||||||| | ||||
Sbjct 755 ATGGACATGT----G--CACGGGAATTCAGATGTTGAAAATGGAGCTAGGCATGTTGTTG 808
Query 969 TTTCTCAGGT-TCTGGAGCTTGGAATTGTGTCACATTCCATAATCATCGGTCTATCCCTT 1027
|||||||| | | |||||||||| |||||||| || || || ||||||||| |||||||
Sbjct 809 TTTCTCAGATAT-TGGAGCTTGGGATTGTGTCGCACTCAATCATCATCGGTTTATCCCTC 867
Query 1028 GGAGTATCTCAGTCTCCTTGCACAATCCGGCCTCTAATCGCAGCACTATCCTTCCATCAA 1087
|||||||| |||||||| ||||| ||| ||||||| || ||||| || || || || ||
Sbjct 868 GGAGTATCGCAGTCTCCATGCACGATCAGGCCTCTCATTGCAGCTCTGTCATTTCACCAG 927
Query 1088 TTCTTTGAAGGATTTGCGCTCGGTGGATGCATCTCCCAAGCGCAATTCAGGAACAAATCA 1147
||||||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct 928 TTCTTTGAAGGATTTGCGCTCGGAGGCTGCATCTCTCAGGCACAGTTCAGGAACAAATCA 987
Query 1148 GCGACCATAATGGCTTGTTTTTTCGCCCTCACAACCCCGATAGGGATCGGGATTGGAACC 1207
|| |||||||||||||| || ||||| || || || |||||||||||||| ||||||||
Sbjct 988 GCAACCATAATGGCTTGCTTCTTCGCGCTAACCACACCGATAGGGATCGGAATTGGAACA 1047
Query 1208 GCAGTGGCGTCGTCTTTCAATTCTCACAGTG-TCGGAGCATTGGTCACTGAAGGTAT-CT 1265
|||||||| ||||||||||| || || || | ||||| |||||||| || || || ||
Sbjct 1048 GCAGTGGCCTCGTCTTTCAACTCGCATAGCCCT-GGAGCTTTGGTCACCGAGGGGATACT 1106
Query 1266 TGGACTCGCTCTCAGCCGGAATTCTTGTGTACATGGCTTTAGTGGATCTCATAGCTGCTG 1325
||||||||| ||||| || || || |||||||||||| | ||||| ||||| || ||||
Sbjct 1107 -GGACTCGCTGTCAGCTGGGATACTGGTGTACATGGCTCTGGTGGACCTCATCGCAGCTG 1165
Query 1326 ATTT-CTTGAGTACAAAA-ATGAGGTGTAACTTT-AGGCTTCAAATTGTATCTTATGTAA 1382
|||| || ||||| | | ||||| ||||| | | ||||||||| |||| |||||| |||
Sbjct 1166 ATTTTCT-GAGTA-AGAGGATGAGTTGTAA-TGTGAGGCTTCAAGTTGTGTCTTATATAA 1222
Query 1383 TGTTGTTCCTAGGAGCTGGACTCATGTCTTCTCTTGCCATTTGGGCTTA 1431
|||||||||| ||||||||||| |||||| |||| ||| ||||||||||
Sbjct 1223 TGTTGTTCCTTGGAGCTGGACTTATGTCTGCTCTCGCCGTTTGGGCTTA 1271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57363908970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5