BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60970.1
Length=833
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924948 jgi|Araly1|924948|scaffold_200509.1 898 0.0
> Ahg924948 jgi|Araly1|924948|scaffold_200509.1
Length=574
Score = 898 bits (486), Expect = 0.0
Identities = 544/573 (95%), Gaps = 0/573 (0%)
Strand=Plus/Plus
Query 120 AGATTTCTTCTCCTTAAGCCATGGAATTGCCCCCAAAAGTGAAAAACATCTTGCTTTTGG 179
|||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1 AGATTTCTTCACCTTACGCCATGGAATTACCCCCAAAAGTGAAAAACATTTTGCTTTTGG 60
Query 180 ATTCTGAAGGAAAGCGTGTAGCGGTTAAGTATTACTCAGATGACTGGCCAACAAATTCAG 239
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 ATTCTGAAGGAAAGCGTGTAGCGGTTAAGTATTACTCAGATGACTGGCCAACGAATTCAG 120
Query 240 CTCAGGAAGCGTTCGAAAAATCCGTGTTTACAAAGACTCAGAAAACAAATGCTAGGACCG 299
||||||| ||||||||||| ||||| || |||||||||||||| |||||| ||||||
Sbjct 121 AGAAGGAAGCCTTCGAAAAATCGGTGTTCACCAAGACTCAGAAAACTAATGCTTGGACCG 180
Query 300 AAGTGGAAGTGACAGCACTGGAGAACAACATTGTTGTGTACAAATTTGTGCAAGATCTCC 359
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 AAGTGGAAGTGACAGCATTGGAGAACAACATTGTTCTGTACAAATTTGTGCAAGATCTCC 240
Query 360 ATTTCTTTGTTACGGGCGGTGAAGAGGAAAACGAGCTTATCTTAGCCAGTGTGCTTGAGG 419
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 ATTTCTTTGTTACGGGCGGTGAAGAGGAAAACGAGCTTATATTAGCCAGTGTGCTTGAGG 300
Query 420 GACTCTTTGATGCAGTGACCCTTCTCCTTAGAAGCAATGTTGATAAGAGAGAGGCACTAG 479
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 301 GACTCTTCGATGCAGTGACCCTTCTCCTTAGAGGCAATGTTGATAAGAGAGAGGCACTGG 360
Query 480 ACAACCTTGATCTCATCTTTCTAAGCTTTGATGAAATTATCGATGGCGGTATTGTTCTGG 539
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 361 ACAACCTTGATCTCATCTTCCTGTGCTTTGATGAAATTATCGATGGCGGTATTGTTCTGG 420
Query 540 AGACGGATGCAAATGTAATAGCAGGTAAAGCAGGGATCAATAGCACTGACCCTAACGCTC 599
||||||| |||||||| || |||||||||||||||||||||||| |||||||||||||||
Sbjct 421 AGACGGACGCAAATGTGATCGCAGGTAAAGCAGGGATCAATAGCGCTGACCCTAACGCTC 480
Query 600 CTCTATCCGAGCAGACGATAAGTCAAGCACTCGCGACTGCAAGAGAACATTTGACAAGGT 659
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 CTCTATCCGAGCAGACGATAAGTCAGGCACTCGCGACTGCAAGAGAACATTTGACAAGGT 540
Query 660 CACTTATGAAATGATGTGTGTTTTGCTCTTCGG 692
||||||||||||||||||||| |||||||||||
Sbjct 541 CACTTATGAAATGATGTGTGTGTTGCTCTTCGG 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30803316936
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5