BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G61250.1 Length=1247 Score E Sequences producing significant alignments: (Bits) Value Ahg475195 jgi|Araly1|475195|fgenesh2_kg.2__325__AT1G61250.1 1938 0.0 Ahg471253 jgi|Araly1|471253|fgenesh2_kg.1__1207__AT1G11180.1 885 0.0 > Ahg475195 jgi|Araly1|475195|fgenesh2_kg.2__325__AT1G61250.1 Length=1256 Score = 1938 bits (1049), Expect = 0.0 Identities = 1193/1259 (95%), Gaps = 24/1259 (2%) Strand=Plus/Plus Query 8 CTTGTCTTCAACGTTCGGC-TAATCCTTGGTCCGTGCT-AAGATCTTAGATCGATTTCTA 65 ||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||| Sbjct 3 CTTGTCTTCAACGTTCGGCTTAATCCTTGGTCCGTGTTCAAGATCTTAGATCGATTTCTA 62 Query 66 AAGTCTTCGTCT---TCTTCTTCTTCTGATAACTAGCTTTTTCAATCTTCTGAAGCTTTA 122 |||||||| ||| ||||| ||| |||||||||||||| || ||||||||||||||||| Sbjct 63 AAGTCTTCTTCTCCGTCTTCGTCTGCTGATAACTAGCTTCTTGAATCTTCTGAAGCTTTA 122 Query 123 ATTTTTTCATACCCATGGCTAATCGTTATGATCCAAATCCTTTCGCTGAGGAAGAAGAAG 182 | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123 A-TTTTTCATAGCCATGGCTAATCGTTATGATCCAAATCCTTTCGCTGAGGAAGAAGAAG 181 Query 183 TCAATCCTTTCGCTAATGCTAGAGGAGTTCCACCTGCGTCGAATTCGAGACTTTCGCCTT 242 ||||||||||||||||| ||| ||| ||||| |||||||||||||||||||||||||||| Sbjct 182 TCAATCCTTTCGCTAATCCTAAAGGTGTTCCGCCTGCGTCGAATTCGAGACTTTCGCCTT 241 Query 243 TGCCTCCAGAGCCTGTTGGTTTCGATTATGGTCGAACCGTAGACATTCCTCTTGACAGAG 302 | |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 242 TACCTCCAGAGCCTGTTGGTTTCGATTATGGTCGAACCGTGGACATTCCTCTTGAGAGAC 301 Query 303 CTGGTACACAGGATTTGAAGAAGAAAGAGAAGGAACTCCAAGCCAAAGAAGCTGAGCTAA 362 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 302 CTGGTGGACAGGATTTGAAGAAGAAAGAGAAGGAACTCCAAGCCAAAGAAGCTGAGCTAA 361 Query 363 AACGACGAGAGCAGGACCTCAAACGGAAAGAAGATGCTGCTGCACGAGCTGGAATCGTTA 422 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 362 AACGACGAGAGCAGGAACTCAAACGAAAAGAAGATGCTGCTGCACGAGCTGGAATCGTTA 421 Query 423 TTGAAGTGAAAAACTGGCCGCCTTTCTTCCCACTTATCCACCATGACATCGCAAACGAAA 482 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 422 TCGAAGTGAAAAACTGGCCGCCTTTCTTCCCGCTTATCCACCATGACATCGCAAACGAAA 481 Query 483 TTCCGGTTCATCTCCAAAGACTACAGTATGTTACCTTTGCAACGTATTTGGGGTTGGTTC 542 |||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 482 TTCCAGTTCATCTCCAAAGACTACAGTATGTTACCTTCGCAACGTATTTGGGTTTGGTTC 541 Query 543 TTTGTCTTTTCTGGAATATCATCGCCGTTACTACAGCTTGGATCAAAGGAGAAGGAGTGA 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 542 TTTGTCTTTTCTGGAATATCATCGCCGTTACTACAGCTTGGATCAAAGGAGAAGGAGTGA 601 Query 603 CGATATGGCTTCTTGCCTTAATTTACTTCATAGCGGGTGTTCCAGGAGGCTATGTGTTAT 662 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 602 CGATATGGCTTCTTGCCTTAATTTACTTCATAGCTGGTGTTCCAGGAGGCTATGTGTTAT 661 Query 663 GGTATCGACCACTCTACCGTGCCTTCAGAACTGATAGTGCATTGAGCTTTGGATGGTTTT 722 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 662 GGTATCGGCCACTCTACCGTGCCTTCAGAACTGATAGTGCATTGAGCTTTGGATGGTTTT 721 Query 723 TCTTGTTCTATATGCTCCACATTGCTTTCTGCGTCTTTGCTGCAGTTGCTCCACCTGTCG 782 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 722 TCTTGTTCTATATGCTCCACATTGCTTTCTGCGTCTTTGCTGCAGTTGCTCCACCTGTCG 781 Query 783 TCTTCAAAGGAAAATCTCTTGCTGGGATCTTACCTGCAATAGATGTCTTAAGTGGTCAAG 842 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 782 TCTTCAAAGGAAAATCTCTTGCTGGGATCTTACCTGCAATAGATGTCTTAAGCGGTCAAG 841 Query 843 CAATTGTTGGGATATTCTACTTCATTGGGTTTGCATTTTTCTGCCTCGAATCAGTGGTTA 902 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 842 CAATTGTTGGGATATTCTACTTCATTGGGTTTGCGTTTTTCTGCCTCGAATCAGTGGTTA 901 Query 903 GCATCTGGGTTATTCAGCAAGTGTATATGTACTTCCGAGGCAGCGGGAAACAAGATCAAA 962 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 902 GCATCTGGGTTATTCAGCAAGTGTATATGTACTTCCGAGGCAGCGGGAAACAAGATCAAA 961 Query 963 TGAGACGGGAAGCAGCGAGAGGAGCCTTGAGAGCCGCTGTTTGAGAG-TTCTCCTTGTAA 1021 ||||||||||||| || |||||||||||||||||||||||||||||| || || |||||| Sbjct 962 TGAGACGGGAAGCGGCAAGAGGAGCCTTGAGAGCCGCTGTTTGAGAGGTT-TCGTTGTAA 1020 Query 1022 CATTCTGGTTTGTGTATGCA--CT-----GTTTCTTT-TTT---CAGATTTTCTTGAAGt 1070 |||||||||||||||||||| || |||||||| ||| | ||||||||| |||| Sbjct 1021 CATTCTGGTTTGTGTATGCAATCTTTACTGTTTCTTTCTTTTTTCTGATTTTCTT-AAGT 1079 Query 1071 ctctctctctctctctctctc--tctctGCTCTATAAACaaaaaaaaaaaGATTTAATTT 1128 ||||||||||||||||||||| |||||||||||||| || |||||||| ||| ||||| Sbjct 1080 CTCTCTCTCTCTCTCTCTCTCCCTCTCTGCTCTATAAGCACAAAAAAAATTATTCAATTT 1139 Query 1129 TTCCTTTGTACCTTTATGTCATGTAAATTTGTTTGTTCAAAAATCAGAGTTCAGATTCAT 1188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 TTCCTTTGTACCTTTATGTCATGTAAATTTGTTTGTTCAAAAATCAGAGTTCAGATTCAT 1199 Query 1189 ACGTATTTTGAAATCATTCATGAAtttttactttttttATAAGAACTCATCTTACATCC 1247 |||||||| |||| |||||| |||| ||| |||||| ||||||||||||||||||||| Sbjct 1200 ACGTATTTCGAAACCATTCAA-AATTGTTAGTTTTTT-ATAAGAACTCATCTTACATCC 1256 > Ahg471253 jgi|Araly1|471253|fgenesh2_kg.1__1207__AT1G11180.1 Length=941 Score = 885 bits (479), Expect = 0.0 Identities = 753/880 (86%), Gaps = 39/880 (4%) Strand=Plus/Plus Query 135 CCATGGCTAATCGTTATGATCCAAATCCTTTCG-CTGAGGAAGAAGAAGTCAATCCTTTC 193 |||||||| |||||| |||| || || |||| | || |||| |||||||||||||| Sbjct 32 CCATGGCTGGTCGTTACGATCGTAACCCATTCGAC-GAACAAGATGAAGTCAATCCTTTT 90 Query 194 GCTAATGCTAGAGGA--GTTCCAC-CTGCGTCGAATTCGAGACTT-TCGCCTTTGCCTCC 249 ||||| || | ||| ||||| | |||| |||||||| ||| || |||||||||||||| Sbjct 91 GCTAACCCT-G-GGAGTGTTCC-CGCTGCTTCGAATTCCAGA-TTATCGCCTTTGCCTCC 146 Query 250 AGAGCCTGTTGGTTTCGATTATGGTCGAACCGTAGACATTCCTCTTGACAGA-----G-C 303 || |||| |||||| | ||| | | || |||||||||||||||||| | | Sbjct 147 CGAACCTGCTGGTTTTGGTTA---T-G----GT-GACATTCCTCTTGACAGACCTGGGTC 197 Query 304 TGGTACACAGGATTTGAAGAAGAAA-GAGAAGGAACTCCAAGCCAAAGAAGCTGAGCTAA 362 |||||||||||||||||| || ||| |||||||| || |||||||||||||||||||||| Sbjct 198 TGGTACACAGGATTTGAA-AAAAAAGGAGAAGGAGCTTCAAGCCAAAGAAGCTGAGCTAA 256 Query 363 AACGACGAGAGCAGGACCTCAAACGGAAAGAAGATGCTGCTGCACGAGCTGGAATCGTTA 422 |||| |||||||||| |||||||||||||| ||||||||||||||||| ||||| |||| Sbjct 257 GACGAAGAGAGCAGGATCTCAAACGGAAAGAGGATGCTGCTGCACGAGCCGGAATTGTTA 316 Query 423 TTGAAGTGAAAAACTGGCCGCCTTTCTTCCCACTTATCCACCATGACATCGCAAACGAAA 482 | || | |||||||||||| || |||||||||||||||||||||||||| ||||| |||| Sbjct 317 TCGAGGCGAAAAACTGGCCACCCTTCTTCCCACTTATCCACCATGACATTGCAAATGAAA 376 Query 483 TTCCGGTTCATCTCCAAAGACTACAGTATGTTACCTTTGCAACGTATTTGGGGTTGGTTC 542 |||| |||| |||||||| ||||||||| || | |||||||| |||||||||||||||| Sbjct 377 TTCCTGTTCGGCTCCAAAGGCTACAGTATATTGCATTTGCAACATATTTGGGGTTGGTTC 436 Query 543 TTTG-TCTTTTCTGGAATATCATCGCCGTTACTACAGCTTGGATCAAAGGAGAAGGAGTG 601 ||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 437 -TTGCACTTTTCTGGAATATCATCGCTGTTACTACTGCTTGGATCAAAGGAGAAGGAGTA 495 Query 602 ACGATATGGCTTCTTGCC-TTAATTTACTTCATAGCGGGTGTTCCAGGAGGCTATGTGTT 660 || || |||||||| ||| || |||||||||||| ||||||| ||||||||||||||||| Sbjct 496 ACAATTTGGCTTCTCGCCATT-ATTTACTTCATATCGGGTGTCCCAGGAGGCTATGTGTT 554 Query 661 ATGGTATCGACCACTCTACCGTGCCTTCAGAACTGATAGTGCATTGAGCTTTGGATGGTT 720 ||||||||| || ||||||||||||||||||| |||||||||||| | |||||||||||| Sbjct 555 ATGGTATCGGCCTCTCTACCGTGCCTTCAGAAGTGATAGTGCATTCAACTTTGGATGGTT 614 Query 721 TTTCTTGTTCTATATGCTCCACATTGC-TTTCTGCGTCTTTGCTGCAGTTGCTCCACCTG 779 |||||||||||| |||||||||| | | ||||||||||||||||||||||||||||||| Sbjct 615 TTTCTTGTTCTACATGCTCCACA-TACTTTTCTGCGTCTTTGCTGCAGTTGCTCCACCTA 673 Query 780 TCGTCTTCAAAGGAAAATCTCTTGCTGGG-ATCTTACCTGCAATAGATGTCTTAAGTGGT 838 | ||||||||||||||||| ||||| ||| || ||||||||||||||||| || || | | Sbjct 674 TTGTCTTCAAAGGAAAATCACTTGC-GGGCATATTACCTGCAATAGATGTGTTGAGCGCT 732 Query 839 CAAGCAATTGTT-GGGATATTCTACTTCATTGGGTTTGCATTTTTCTGCCTCGAATCAGT 897 || ||| ||| | ||||| ||||||||||| ||||||| || |||||||| |||||||| Sbjct 733 CAGGCA-TTGGTCGGGATCTTCTACTTCATCGGGTTTGGGTTATTCTGCCTTGAATCAGT 791 Query 898 GGTTAGCATCTGGGTTATTCAGCAAGTGTATATGTACTTCCGAGGCAGCGGGAAA-CAAG 956 ||| ||||||||||||||||||||||| || |||||||||||||| ||||||||| | | Sbjct 792 GGTCAGCATCTGGGTTATTCAGCAAGTATACATGTACTTCCGAGGAAGCGGGAAAGCG-G 850 Query 957 ATCAAATGAGACGGGAAGCAGCGAGAGGAGCCTTGAGAGC 996 || | ||||||| ||| || || ||||||||| ||||||| Sbjct 851 ATGAGATGAGACAGGATGCTGCAAGAGGAGCCATGAGAGC 890 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46586204574 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5