BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61260.1
Length=1409
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924903 jgi|Araly1|924903|scaffold_200464.1 1461 0.0
> Ahg924903 jgi|Araly1|924903|scaffold_200464.1
Length=1106
Score = 1461 bits (791), Expect = 0.0
Identities = 1017/1119 (91%), Gaps = 43/1119 (4%)
Strand=Plus/Plus
Query 64 gaaagcttaaatcggaaaaaaTGGTTTCGTGGATGATGACAACCAAGGCGGTGCTAATCT 123
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 GAAAGCTTAAATCGGAAAAAATGGTTTCGTGGATGATGACAGTCAAGGCGGTGCTAATCT 60
Query 124 CAAGCGGCGTCGCCACCGTGGCTCTGTTACTGAAACTCTCTGTTCCGGTAGCTGTTGATT 183
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 CAAGCGGCGTCGCCACCATGGCTCTGTTACTTAAACTCTCTGTTCCGGTAGCTGTTGATT 120
Query 184 TCTCCGTGTCACGAGCTCCGATCTTGTGGAGCTCCTTGTTGTCATGGCTGAAACCACCGT 243
||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||
Sbjct 121 TCTCCGTGTCACGAGCTCCGATCTTTTGGAGTTCCTTGTTGTCATGGCTAAAACCGCCGT 180
Query 244 ATCTTTACGTTGTTACCAACGGAATTATCATCACTATCGTTGCTTCTTCTAAGTATTACC 303
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 ATCTTTACGTTGTTACCAACGGAATTATCATCACTATCGTCGCTTCTTCTAAGTATTACC 240
Query 304 GAAGTCACCATGACCGTGATGAAGAAGATGAGATCGTCGTGTACGGTGGTGGAGGTTATA 363
|| | |||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 241 GACGCCACCATGACCGTGATGAAGAAGATGAGATCGTTGTATACGGTGGTGGAGGTTATA 300
Query 364 AGATCCAGACGGAGGAGCCGATTGTGAATCAACATCAAGCTTCTCCGAGGATTCTGGAGG 423
||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 AGATCCATACGGAGGATTCGATTGTGAATCAACATCAAGCTTCTCCGCGGATTCTGGAGG 360
Query 424 TTAAGGATTTGGATACTGGTGCGCATTTTGGTTTCGTTGTGGCGAATCTGGAGGCTGAGG 483
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 361 TTAAGGATTTAGATACTGGTGCGCATTTTGGTTTCGTTGTGGCGAATCCGGAGGCGGAGG 420
Query 484 AACTGGAATCAGAGGCGGTTACGGCGGTTGTGTTTGACGATGAGGAGGAGGAGA-AGA-A 541
|| |||||||||||||||||||||||||||||| ||| |||||||||||| ||| | | |
Sbjct 421 AATTGGAATCAGAGGCGGTTACGGCGGTTGTGTATGATGATGAGGAGGAGAAGATA-ACA 479
Query 542 GATTATAGATAGCG-CGGCGACGGCGGAGGATGAAATTGAAGAGGAGCTTAAGAGTGTGA 600
||| | | ||||| ||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 480 GAT-ACGG-TAGCGACGGCG--GA-GGAAGATGAAATTGAAGAGGAGCTTAAGAGTGTGA 534
Query 601 TTATGGTTGAGAATTCAGATCTGGTTGAATCCGATGTCATA-C--CGCCGC---C-GAT- 652
||||||| ||||||||||||||||||||||||||||||||| | |||| | |||
Sbjct 535 TTATGGTGGAGAATTCAGATCTGGTTGAATCCGATGTCATATCTTCGCCAATTTCAGATC 594
Query 653 G-A-TGATC-G------A--ATC---G-G--AGA-A-TCTTCCTCCGATTGAGAAGCCTC 693
| | | ||| | | || | | ||| | |||||||||||||||||||||||
Sbjct 595 GGAATAATCTGCCGCCGATGATGATTGAGTCAGAGAATCTTCCTCCGATTGAGAAGCCTC 654
Query 694 TCGTTACTTCAAGGTTCGGTCACCGGAAATTGATGAAAGCAAGTCAAGAAGGTGGAAGAG 753
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 655 TTGTTACTTCAAGGTTCGGTCACCGGAAACTGATGAAAGCAAGTCAAGAAGGTGGAAGAG 714
Query 754 CTTTGAGAGTGACGAAGCCGAAGAAGAACGAGACGTTGGAGAATACGTGGAAGATGATAA 813
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 715 CTTTGAGAGTGACGAAGCCGAAGAAGAACGAGACATTAGAGAATACGTGGAAGATGATTA 774
Query 814 CGGAAGGGAAATCAACGCCGTTGACTAGACAGTTATACCGGAGATCTGACACGTTTGGAC 873
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 775 TGGAAGGGAAGTCAACGCCGTTGACTAGACAGTTATACCGGAGATCTGATACGTTTGGTC 834
Query 874 GTGGAGATTCCGGGGGAGTTGACGGTGAGGTGAAACCGGTTTATAAGAAGTCGGATACGT 933
|||| |||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 835 GTGGTGATTCCGGCGGAGTTGACGGCGAGGTGAAACCGGTTTACAAGAAATCGGATACGT 894
Query 934 TTAGGGACAGGACTAATTATTATCAGTTGGCGGAGACGGCGAAGGTGAGGAAAGAGCCGT 993
||||||||||||||||||||||||||| | |||||| || ||||||||||||||||||||
Sbjct 895 TTAGGGACAGGACTAATTATTATCAGTCGCCGGAGATGGTGAAGGTGAGGAAAGAGCCGT 954
Query 994 CGCTGAGTCAGGAAGAGTTGAATCGGCGAGTTGAGGCGTTTATAAAGAAGTTTAATGAGG 1053
||||||| ||||| ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 955 CGCTGAGCCAGGACGAGCTGAATCGGCGAGTTGAAGCGTTTATAAAGAAGTTTAATGAGG 1014
Query 1054 AGATGAAGTTGCAGAGAATGGAGTCTCTCAGACAGTACAAAGAGATAACTAGCCGTGGGg 1113
||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 1015 AGATGAAGTTGCAGAGAATGGAGTCGCTGAGACAGTACAAAGATATAACTAGCCGTGGGG 1074
Query 1114 tttagtttactgtttttattttctggttaaaattttttc 1152
|||||||| | ||||| | | | | |||||||||||||
Sbjct 1075 TTTAGTTT--T-TTTTT-TCT-C-G-TTAAAATTTTTTC 1106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52678808835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5