BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61520.1
Length=1198
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475174 jgi|Araly1|475174|fgenesh2_kg.2__304__AT1G61520.1 1810 0.0
Ahg937125 jgi|Araly1|937125|scaffold_501316.1 226 3e-58
Ahg932941 jgi|Araly1|932941|scaffold_400929.1 226 3e-58
Ahg914834 jgi|Araly1|914834|Al_scaffold_0001_5088 172 4e-42
> Ahg475174 jgi|Araly1|475174|fgenesh2_kg.2__304__AT1G61520.1
Length=1136
Score = 1810 bits (980), Expect = 0.0
Identities = 1094/1147 (95%), Gaps = 16/1147 (1%)
Strand=Plus/Plus
Query 1 AAAACCAGTTGGGCTATTTGAAAGCCACAAGTACTTGGAACCTTTGTTTCTTCTACCCTA 60
||||||||||| ||||||||||| ||||||||| |||| |||||||||||||||||||||
Sbjct 1 AAAACCAGTTGTGCTATTTGAAAACCACAAGTA-TTGG-ACCTTTGTTTCTTCTACCCTA 58
Query 61 ACATAGC-CCTTGCAAACCATAACCAAACCATCATCATCATCATCTCTTGGTGACAGAAG 119
||||||| || |||| |||||||| ||| || |||||||| ||||||||||||||||||
Sbjct 59 ACATAGCTCC-TGCAGACCATAACTAAA-CA--ATCATCATAATCTCTTGGTGACAGAAG 114
Query 120 AAAAGAGTTGAGGAACAGAGAAAATGGCAGCACAAGCACTTGTGTCTTCTTCACTTACCT 179
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 AGAAGAGTTGAGGAACAGAGAAAATGGCAGCACAAGCACTTGTGTCTTCTTCACTTACCT 174
Query 180 CCTCTGTTCAGACAGCTAGACAGATATTTGGCTCAAAACCAGTTGCGTCTGCCTCACAGA 239
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 175 CCTCTGTTCAGACAGCTAGACAGATATTTGGCTCAAAACCAGTTGCTTCTGCGTCACAGA 234
Query 240 AGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGCAAGGAGCCAACA 299
||||||||||||||||||||| ||| | |||||||||||||||||||||||||| ||||
Sbjct 235 GGAAGAGTTCCTTTGTTGTTAAGGCTACAGCAACTCCACCTGTCAAGCAAGGAGCAAACA 294
Query 300 GACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGCTTACCTGGTG 359
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 GACCATTGTGGTTTGCATCATCGCAGAGTCTCTCTTACTTGGATGGCAGCTTACCTGGTG 354
Query 360 ACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGGTACTGGAGGATTCATTGAGC 419
|||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 355 ACTATGGATTTGACCCACTTGGTCTTTCAGACCCAGAAGGTACTGGAGGGTTCATTGAGC 414
Query 420 CAAGATGGCTAGCATACGGAGAGATCATCAACGGACGGTTCGCCATGTTGGGTGCAGCTG 479
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 415 CGAGATGGCTAGCATACGGAGAGATCTTCAACGGACGGTTCGCCATGTTGGGTGCAGTTG 474
Query 480 GAGCTATTGCTCCTGAGATTTTAGGAAAGGCTGGTCTGATTCCAGCAGAGACTGCTCTTC 539
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 475 GAGCTATTGCTCCTGAGATTCTAGGAAAGGCTGGTCTGATTCCACCAGAGACTGCTCTTC 534
Query 540 CTTGGTTCCAAACCGGTGTGATTCCACCAGCAGGGACATACACTTACTGGGCAGACAATT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CTTGGTTCCAAACCGGTGTGATTCCACCAGCAGGGACATACACTTACTGGGCAGACAATT 594
Query 600 ACACACTCTTTGTTCTCGAGATGGCTCTGATGGGATTCGCTGAGCACCGGAGGTTACAGG 659
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 595 ACACACTCTTTGTTTTCGAGATGGCTCTGATGGGATTCGCTGAGCATCGGAGGTTACAGG 654
Query 660 ACTGGTACAACCCAGGATCTATGGGAAAACAGTACTTCTTGGGGTTAGAGAAGGGTTTGG 719
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 655 ACTGGTACAACCCAGGATCTATGGGAAAGCAGTACTTCTTGGGGTTAGAAAAGGGTTTGG 714
Query 720 CCGGTTCAGGTAACCCGGCTTACCCCGGTGGACCTTTCTTCAACCCTCTTGGGTTTGGGA 779
| ||||||||| |||| |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 715 CTGGTTCAGGTGACCCAGCTTACCCTGGTGGACCTTTCTTCAACCCTCTAGGGTTTGGGA 774
Query 780 AAGATGAGAAGTCACT-GAAGGAGTTGAAACTCAAGGAGGTCAAGAACGGTAGACTGGCT 838
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 AAGATGAGAAGTC-CTTGAAGGAGTTGAAACTCAAGGAGGTCAAGAACGGTAGACTGGCT 833
Query 839 ATGCTCGCCATCCTCGGTTACTTTATCCAAGGACTAGTGACCGGTGTGGGACCTTATC-A 897
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
Sbjct 834 ATGCTCGCCATCCTCGGTTACTTTATCCAGGGACTAGTGACCGGTGTGGGACCTT-TCCA 892
Query 898 GAACCTGCTTGATCACTTGGCTGATCCCGTCAACAACAACGTCTTGACCAGCCTCAAGTT 957
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 893 GAACCTGCTTGATCACTTGGCTGATCCCATCAACAACAACGTCTTGACCAGCCTCAAGTT 952
Query 958 CCACTGAGGTGATCATCATC-TCATGTGTTTTTATGTCTCTTGTATCGTACAA-TATTTC 1015
|||||||||||||||||||| | ||||||||| |||||||||||||||||||| | ||||
Sbjct 953 CCACTGAGGTGATCATCATCCT-ATGTGTTTT-ATGTCTCTTGTATCGTACAAATCTTTC 1010
Query 1016 CATCTTTCGCTACCATTGGCTTCTTCGTATTGTAACACCCTGTGTAAACATATTCGTGTT 1075
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1011 TATCTTTCGCTACCATTGGCTTCTTCGTATTGTAACAGCCTGTGTAAACATATTCGTGTT 1070
Query 1076 TTGTAAGAAATGACAATGTCAATGGCCAAACGAAAAAACTTTTAGGATTAACAGTTGGCA 1135
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1071 TTGTAAGAAATGACAATGTCAATGGCCAAACGAAAAA-CTTTTAGGATTAACAGTTGGTA 1129
Query 1136 TTTGCAA 1142
|||||||
Sbjct 1130 TTTGCAA 1136
> Ahg937125 jgi|Araly1|937125|scaffold_501316.1
Length=915
Score = 226 bits (122), Expect = 3e-58
Identities = 145/155 (94%), Gaps = 5/155 (3%)
Strand=Plus/Plus
Query 967 TGATCAT-CATCTCATGTGTTTTTATGTCTC-TTGTATCGTACAATATTTCCATCT-TTC 1023
||||||| ||||||||||| ||||||||||| ||||||| || ||| |||| |||| ||
Sbjct 763 TGATCATCCATCTCATGTG-TTTTATGTCTCTTTGTATCCTAAAATCTTTCTATCTCTT- 820
Query 1024 GCTACCATTGGCTTCTTCGTATTGTAACACCCTGTGTAAACATATTCGTGTTTTGTAAGA 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 GCTACCATTGGCTTCTTCGTATTGTAACACCCTGTGTAAACATATTCGTGTTTTGTAAGA 880
Query 1084 AATGACAATGTCAATGGCCAAACGAAAAAACTTTT 1118
|||||||||||||||||||||| ||||||||||||
Sbjct 881 AATGACAATGTCAATGGCCAAAAGAAAAAACTTTT 915
> Ahg932941 jgi|Araly1|932941|scaffold_400929.1
Length=914
Score = 226 bits (122), Expect = 3e-58
Identities = 145/155 (94%), Gaps = 5/155 (3%)
Strand=Plus/Plus
Query 967 TGATCAT-CATCTCATGTGTTTTTATGTCTC-TTGTATCGTACAATATTTCCATCT-TTC 1023
||||||| ||||||||||| ||||||||||| ||||||| || ||| |||| |||| ||
Sbjct 762 TGATCATCCATCTCATGTG-TTTTATGTCTCTTTGTATCCTAAAATCTTTCTATCTCTT- 819
Query 1024 GCTACCATTGGCTTCTTCGTATTGTAACACCCTGTGTAAACATATTCGTGTTTTGTAAGA 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 GCTACCATTGGCTTCTTCGTATTGTAACACCCTGTGTAAACATATTCGTGTTTTGTAAGA 879
Query 1084 AATGACAATGTCAATGGCCAAACGAAAAAACTTTT 1118
|||||||||||||||||||||| ||||||||||||
Sbjct 880 AATGACAATGTCAATGGCCAAAAGAAAAAACTTTT 914
> Ahg914834 jgi|Araly1|914834|Al_scaffold_0001_5088
Length=303
Score = 172 bits (93), Expect = 4e-42
Identities = 103/108 (95%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 348 GCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGGTACTGGAG 407
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 146 GCTTACCTGGTGACTATGGATTTGACCCACTTGGTCTTTCAGACCCAGAAGGTACTGGAG 205
Query 408 GATTCATTGAGCCAAGATGGCTAGCATACGGAGAGATCATCAACGGAC 455
| ||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 206 GGTTCATTGAGCCGAGATGGCTAGCATACGGAGAGATCTTCAACGGAC 253
Score = 82.4 bits (44), Expect = 7e-15
Identities = 48/50 (96%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 915 TGGCTGATCCCGTCAACAACAACGTCTTGACCAGCCTCAAGTTCCACTGA 964
|||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 254 TGGCGGATCCCATCAACAACAACGTCTTGACCAGCCTCAAGTTCCACTGA 303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44718181641
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5