BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61660.1
Length=1594
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475161 jgi|Araly1|475161|fgenesh2_kg.2__291__AT1G61660.1 2344 0.0
> Ahg475161 jgi|Araly1|475161|fgenesh2_kg.2__291__AT1G61660.1
Length=1575
Score = 2344 bits (1269), Expect = 0.0
Identities = 1483/1580 (94%), Gaps = 39/1580 (2%)
Strand=Plus/Plus
Query 49 ATATATAAAAACTTTAACCTTCGTATAGCAACGATCTAGTAGAAAGC---T-TATACTAA 104
||||||| ||||||| ||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1 ATATATATAAACTTTGACCTTCGTATAGCAACGATCTAGTAGAAAGCATATATATACTAA 60
Query 105 AACTTTCTGATTCTCT-TAATATGGCGGAGGAGTTTAAAGCTACGGCAT-CGATTTGTGG 162
|||||||||||||||| | |||||||||| |||||| ||| ||||| | ||||||||||
Sbjct 61 AACTTTCTGATTCTCTCT-ATATGGCGGATGAGTTTCGAGCGACGGC-TGCGATTTGTGG 118
Query 163 TGGCGGAGGTGGCGCGTGGTGGAACTCGCCAAGGAGCGTTATGTCTCCTTCGGATCATTT 222
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 119 TGGCGGAGGTGGCGCGTGGTGGAACTCACCAAGGAGCGTTATGTCTCCTTCGGATCATTT 178
Query 223 CTTGTCACCATGCTTCGGAGCGGCTATCACTTCCAATGATTTTAGCTCGCAAGAGAATCA 282
||||||||| || |||||||| |||| |||||| ||||||||| ||||||||||||| |
Sbjct 179 CTTGTCACCTTGTTTCGGAGCTTCTATTACTTCCGATGATTTTACCTCGCAAGAGAATAA 238
Query 283 TCTCAAATCTAGGATGACTTGTACGG---------ACAACAACAACATCGTTTTCGGGCA 333
||||||| ||||| ||||| |||||| |||||||||||||||||||||||||
Sbjct 239 TCTCAAAGCTAGGGTGACTAGTACGGACAACAACAACAACAACAACATCGTTTTCGGGCA 298
Query 334 GCGAGAGGCGGATTCTGACAGTGGAGGAAGTACCGTGACGATGGACTCGACGTTGCAGAT 393
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 299 GCGAGAGGCGGATTCTGACAGTGGAGGAAGTACCGTGACGATGGATTCGACGTTGCAGAT 358
Query 394 GATGGGTCTAGGGTTTTCCTCAAATTGTTCTTCAGATTGGAACCAAACCATTTTACAAGA 453
|||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||
Sbjct 359 GATGGGTCTAGGGTTTTCTTCAAATTCTTCTTCAGATTGGAGCCAAACCATTTTACAAGA 418
Query 454 AGACTTAAACTCAAGCTTCATAAGGAGCTCACAAGATCAAGATCATGGCCAAGGATTCTT 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AGACTTAAACTCAAGCTTCATAAGGAGCTCACAAGATCAAGATCATGGCCAAGGATTCTT 478
Query 514 ATCCACAACTACTTCACCTTATATACTTAATCCAGCTTGTTCTTCATCTCCATCAACTTC 573
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 479 ATCCACAACTACTTCACCTTATATACTTAATCCAGCGTGTTCTTCATCTCCATCAACTTC 538
Query 574 TTCGTCCTCAAGCTTGATACGAACCTTTTACGATCCCGAACCAAGTCCATACAACTTTGT 633
||| ||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 539 TTCTTCCTCGAGCTTGTTACGAACCTTTTACGAACCCGAACCAAGTCCATACAACTTTGT 598
Query 634 CTCCACCACAAGTGGTTCAATCAACGATCCTCAACTTTCTTGGGCTAATAAGACAAATCC 693
||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 599 CTCTACCACAAGTTGTTCAATCAACGATCATCAACTTTCTTGGGCTAATAAGACAAATCC 658
Query 694 TCATCATCAAG-TAGCTTATGGACTAATTAACAGCTTCTCTAACAACGCAAACTCTCGAC 752
||||||||||| | |||||||| ||| ||||| ||||||||||||||||||||||||||
Sbjct 659 TCATCATCAAGCTT-CTTATGGATTAACTAACAACTTCTCTAACAACGCAAACTCTCGAC 717
Query 753 CCTTTTGGAATTCTTCATCAACCACTAACTTAAACAACACGACGCCGAGCAATTTTGTAA 812
||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 718 CCTTTTGGAGTTCTTCATCAACCACTAACTTAAACAACACGACGCCAAACAATTTTGTAA 777
Query 813 CCACTCCGCAGATAATATCTACTCGTTTGGAGGACAAAACCAAGAATCTGAAGACAAGAG 872
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 778 CCACTCCGCAGATAATATCTACTCGTTTAGAGGACAAAACCAAGAATCTGAAGACAAGAG 837
Query 873 CTCAGAGTGAGTCTTTGAAGAG-AGCAAAGGATAATGAATCTGCGGCGAAGAAACCGAGA 931
|||||||||||||||||||||| | ||||||||| ||||||||||||||| |||||||||
Sbjct 838 CTCAGAGTGAGTCTTTGAAGAGGA-CAAAGGATAGTGAATCTGCGGCGAAAAAACCGAGA 896
Query 932 GTCACCACGCCTTCACCGTTGCCAACTTTCAAGGTGAGAAAAGAGAATCTAAGGGACCAG 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GTCACCACGCCTTCACCGTTGCCAACTTTCAAGGTGAGAAAAGAGAATCTAAGGGACCAG 956
Query 992 ATAACTTCATTACAACAACTAGTTTCACCTTTCGGAAAGACAGATACTGCATCTGTTCTC 1051
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 ATTACTTCATTACAACAACTAGTTTCACCTTTCGGAAAGACAGATACTGCATCTGTTCTC 1016
Query 1052 CAAGAAGCTATAGAGTACATCAAGTTCCTTCACGACCAAGTCACTGTTCTAAGCACTCCA 1111
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1017 CAAGAAGCTATAGAGTACATCAAGTTCCTTCATGACCAAGTCACTGTTCTAAGCACTCCA 1076
Query 1112 TACATGAAACAAGGTGCCTCGAACCAACAACAACAGCA---GATATCTGGTAAATCGAAG 1168
|| ||||||||||||||||||| |||||||||||| || |||||||||||| ||||||
Sbjct 1077 TATATGAAACAAGGTGCCTCGAGCCAACAACAACAACAACAGATATCTGGTAAGTCGAAG 1136
Query 1169 AGTCAAGATGAAAATGAGAATCACGAACTAAGAGGACATGGTCTATGTCTCGTCCCAATA 1228
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AATCAAGATGGAAATGAGAATCACGAACTAAGAGGACATGGTCTATGTCTCGTCCCAATA 1196
Query 1229 TCAAGCACGTTTCCGGTGGCTAACGAAACAACAGCCGATTTTTGGACACCAACGTTTGGG 1288
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1197 TCAAGCACGTTTCCGGTGGCTAACGAAACAACAGCCGATTTTTGGACGCCAACGTTTGGG 1256
Query 1289 GGCAACAATTTCAGGT-G---ATTAAAGAGAGAGGGTTGTGGTTGTCAAGACGGATGGGA 1344
|||||||||||||||| | |||||||||||||| || |||||||||||||||||||||
Sbjct 1257 GGCAACAATTTCAGGTAGGTGATTAAAGAGAGAGGATTATGGTTGTCAAGACGGATGGGA 1316
Query 1345 ACATATGCTAAATTCAGCTTGGAGACTCTAAAGCATAACAATAATTTTTAATGTATTTTC 1404
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1317 ACATATGCTAAATTCAGCTTGGAGACTCTAAAGCATAACAATAATTTTTA-TGTATTTTC 1375
Query 1405 TTCTTCTTT------CAATATTTTAAGGG-GGGTTT-ATTGCTGAATTTAGCATATATGG 1456
||||||||| |||||||||||||| |||||| |||||||||||||||| ||||||
Sbjct 1376 TTCTTCTTTTTATTTCAATATTTTAAGGGAGGGTTTTATTGCTGAATTTAGCAGATATGG 1435
Query 1457 GTTGTTTTTATGTTGAATAACCTTTTGTTCCTGTCATTGTTCTTGAatatatatatata- 1515
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 GTTGTTTTTATGTAGAATAACCTTTTGTTCCTGTCATTGTTCTTGAATATATATATATAT 1495
Query 1516 -CATATTTTTGTCGTTGGTAACATCTTTGTTAATCACTTATTAAAGTTAGAGAACATAAT 1574
|||||||||| ||||||| |||||||||||| ||||||||||||||| ||||||||||
Sbjct 1496 ACATATTTTTGCCGTTGGTGCCATCTTTGTTAACCACTTATTAAAGTTAAAGAACATAAT 1555
Query 1575 AATTGGTGGTTTGTCATATG 1594
||||||||||||||||||||
Sbjct 1556 AATTGGTGGTTTGTCATATG 1575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59725504160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5