BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61740.1
Length=1726
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475155 jgi|Araly1|475155|fgenesh2_kg.2__285__AT1G61740.1 2639 0.0
> Ahg475155 jgi|Araly1|475155|fgenesh2_kg.2__285__AT1G61740.1
Length=1662
Score = 2639 bits (1429), Expect = 0.0
Identities = 1587/1663 (95%), Gaps = 11/1663 (1%)
Strand=Plus/Plus
Query 35 aaaacccccaaacaaaaaaaTGAGAAACAATTTCGTCCCTATA---AT-T-C-TC-T--C 85
|||||||| ||||| |||||||||||||||||||||||||||| | | | || | |
Sbjct 1 AAAACCCCAAAACATAAAAATGAGAAACAATTTCGTCCCTATAGTTTTCTCCTTCATCAC 60
Query 86 CTTCATCATCTTCTTGACTCCATCAATCGCAGAACAAGAACCTTCAATTCTTTCTCCCGT 145
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 CTTCATCATCTTCTTAACTCCATCAATCGCAGAACAAGAACCTTCACTTCTTTCTCCCGT 120
Query 146 CGATCAACTCCTCAACAAAACAAGCTCATACCTCGATTTTTCAACAAAATTCAACCAACC 205
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGATCATTTCCTAAACAAAACAAGCTCATACCTCGATTTTTCAACAAAATTCAACCAACC 180
Query 206 AAGAATCGAACTAACAACATCAACGATCATCGCCGGCTTACTCTCTTTCCTAGCTTCATC 265
|| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 AAAAATCGAATTAACAACATCAACGATCATCGCCGGCTTACTATCTTTCCTAGCTTCATC 240
Query 266 AATCTCAAGCGCCGGTGGAATCGGCGGTGGAGGTTTATATGTTCCGATAATGACAATCGT 325
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 241 AATCTCAAGCGCCGGTGGAATCGGCGGTGGAGGTTTATACGTTCCGATAATGACAATTGT 300
Query 326 GGCCGGTCTCGATCTAAAGACAGCTTCAAGCTTCTCAGCTTTTATGGTTACTGGTGGATC 385
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGCTGGTCTCGATCTAAAAACAGCTTCAAGCTTCTCAGCTTTTATGGTTACTGGTGGATC 360
Query 386 TATAGCTAACGTGGGATGCAATCTATTCGTTAGAAACCCTAAATCTGGTGGCAAAACCCT 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TATAGCTAACGTGGGATGCAATCTATTCGTTAGAAACCCTAAATCTGGTGGCAAAACCCT 420
Query 446 AATCGACTTCGATTTAGCTCTTTTATTGGAACCATGTATGCTTCTTGGAGTTAGTATTGG 505
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AATCGATTTCGATTTAGCTCTTTTATTGGAACCATGTATGCTTCTTGGAGTTAGTATTGG 480
Query 506 TGTGATCTGTAATCTTGTTTTTCCGAACTGGTTGATTACGAGTCTCTTCGCTGTGTTTCT 565
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 TGTGATCTGTAACCTTGTTTTTCCGAACTGGTTGATTACGTCTCTCTTCGCTGTGTTTCT 540
Query 566 TGCGTGGTCGACGTTGAAGACTTTTGGAAATGGACTTTATTATTGGAGATTGGAATCGGa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 541 TGCGTGGTCGACGTTGAAGACTTTTGGAAATGGACTTTATTATTGGAGATTGGAATCAGA 600
Query 626 gatggtgaagattagagaatcgaat-agaattgaagaagatgatgaagaagataagattg 684
||||||||||||||||||||||||| | ||||| |||||| |||||||||||||||||||
Sbjct 601 GATGGTGAAGATTAGAGAATCGAATCA-AATTGGAGAAGACGATGAAGAAGATAAGATTG 659
Query 685 agaGTCTAAAGTTGCCTCTCTTGGAGGATTATCAGAGACCAAAGAGGTTTCCATGGATTA 744
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 660 AGAGTCTGAAGTTGCCTCTCTTGGAGGATTATGAGAGACCAAAGAGGTTTCCATGGATTA 719
Query 745 AGCTTGGAGTTTTGGTCATTATTTGGCTTTCTTACTTCGCAGTTTATCTTCTTCGAGGAA 804
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 720 AGCTTGGAGTTTTGGTGATTATTTGGCTTTCTTACTTCGCAGTTTATCTTCTTCGTGGAA 779
Query 805 ACAAATATGGCGAGGGAATCATATCGATCGAGCCATGTGGAAACGCCTACTGGCTCATTT 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 780 ACAAATATGGCGAGGGAATCATATCGATCGAGCCATGTGGAAACGCCTACTGGCTAATTT 839
Query 865 CATCGTCTCAAATACCACTAACTCTCTTCTTCACTCTCTGGATCTGCTTCAGTGACAATG 924
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 840 CATCGTCTCAAATACCACTCACTCTCTTCTTCACTCTATGGATCTGCTTCAGTGACAATG 899
Query 925 TTCAAAGCCAACAACAATCAGATTACCATGTCTCAGTAAAGGATGTAGAAGATTTGAGAT 984
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TTCAAAGCCAACAACCATCAGATTACCATGTCTCAGTAAAGGATGTAGAAGATTTGAGAT 959
Query 985 CAAATGATGGAGCAAGATCAAACAAGTGTATGTTCCCTGTAATGGCTCTATTAGCTGGAG 1044
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 960 CAAATGATGGAGCAAGATCAAACAAGTGTATGTTTCCTGTAATGGCTCTTTTAGCTGGAG 1019
Query 1045 TTTTGGGTGGTGTTTTTGGTATTGGAGGTGGAATGCTCATTAGTCCTCTTCTTCTCCAAG 1104
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1020 TTTTGGGTGGTGTTTTTGGTATTGGAGGTGGAATGCTCATTAGTCCTCTTCTCCTCCAAG 1079
Query 1105 TTGGTATCGCTCCCGAGGTAACTGCAGCGACATGTTCTTTCATGGTTCTTTTTTCATCAA 1164
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1080 TCGGTATCGCTCCCGAGGTAACTGCAGCGACATGTTCTTTCATGGTTCTGTTTTCATCAA 1139
Query 1165 CGATGTCTGCGATTCAATACTTATTACTAGGCATGGAACATACCGGAACCGCAAGTATAT 1224
| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1140 CAATGTCTGCGATTCAGTACTTGTTACTAGGCATGGAACATACTGGAACCGCAAGTATAT 1199
Query 1225 TTGCGGTTATATGTTTTGTGGCATCACTCGTGGGACTAAAGGTGGTTCAAAAGGTAATAA 1284
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TCGCGGTTATATGTTTTGTGGCATCACTCGTGGGACTAAAGGTGGTTCAAAAGGTAATAA 1259
Query 1285 CCGAGTATGGAAGGGCTTCGATCATTGTGTTCTCGGTTGGTATCGTCATGGCATTGAGTA 1344
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1260 CTGAGTATGGAAGGGCTTCGATCATCGTGTTCTCGGTTGGTATCGTCATGGCATTGAGCA 1319
Query 1345 TTGTGTTGATGACAAGCTATGGAGCTCTTGATGTTTGGAATGATTATGTCTCTGGTCGTT 1404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TTGTGTTGATGACAAGCTATGGAGCTCTTGATGTTTGGAATGATTATGTCTCTGGTCGTT 1379
Query 1405 ACATGGGTTTCAAGTTACCTTGTTGAGACCAAGTTTCATAATACATGTGTATATCATATC 1464
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1380 ACATGGGTTTCAAGTTACCTTGTTGAGACCAAGTTTCATAAAAGATGTGTATATCATATC 1439
Query 1465 ACCATGTTGTTGCTCTTTCATCCATTTGGTCATTTAGAGTTAACAAGCTTTCTATTTCTT 1524
| |||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1440 ATCATGTTGTTGCTTTTTCATCCATTTGGTCATTTAGAGTTAATAAGCTTTCTGTTTCTT 1499
Query 1525 TCTTTTGTATGATTTTTAAATCACTATTCAGAATGCACATCTCGTGCATTCGAATATATG 1584
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TATTTTGTATGATTTTTAAATCACTATTCAGAATGCACATCTCGTGCATTCGAATATATG 1559
Query 1585 GTCAAATAAAAGTTATGTTCTGGACCTAAATTCAGATTTCAATATCCAATTCTATGCATT 1644
||||||||||| ||||||| ||||| |||| |||| ||| |||||| |||||||||||||
Sbjct 1560 GTCAAATAAAATTTATGTTGTGGACATAAACTCAGTTTTTAATATCAAATTCTATGCATT 1619
Query 1645 TGTTTGTGTAGTTTTATTGTCATAGTGTTGTCCACAATTGCCG 1687
| ||||||||| ||||| ||| || || ||| |||||| ||||
Sbjct 1620 TTTTTGTGTAGATTTATCGTCTTAATGCTGTACACAATCGCCG 1662
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64753416500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5