BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62180.1
Length=1766
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475126 jgi|Araly1|475126|fgenesh2_kg.2__256__AT1G62180.1 2327 0.0
Ahg945948 jgi|Araly1|945948|scaffold_702177.1 706 0.0
> Ahg475126 jgi|Araly1|475126|fgenesh2_kg.2__256__AT1G62180.1
Length=1629
Score = 2327 bits (1260), Expect = 0.0
Identities = 1450/1542 (94%), Gaps = 12/1542 (1%)
Strand=Plus/Plus
Query 124 ttttttGATTAGAAATGGCTTTAGCTGTTA---CTTCTTCTTCAACTGCAATCTCTGGAT 180
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 94 TTTTTTGATTAGAAATGGCTTTAGCTGTTACTTCTTCTTCTTCAACTGCGATCTCTGGAT 153
Query 181 CGAGTTTCTCTCGTTCTGGAGCTTCTTCTGAATCTAAAGCTCTTCAAATATGTTCGATTA 240
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 154 CGAGTTTCTCTCGTTCAGGAGCTTCTTCTGAATCTAAAGCTCTTCAAATCTGTTCGATTA 213
Query 241 GGTTATCTGATCGAACCCATTTGTCTCAGAGACGTTACTCTATGAAACCTTTAAACGCTG 300
||||||| ||||||||||||||||| |||||||||||||||||||||||||||| || ||
Sbjct 214 GGTTATCAGATCGAACCCATTTGTCCCAGAGACGTTACTCTATGAAACCTTTAAGCGTTG 273
Query 301 AGTCACATTCACGAAGCGAATCTTGGGTTACTCGTGCTTCAACTCTAATTGCTCCTGAAG 360
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 274 AGTCACATTCACGAAACGAATCTTGGGTTTCTCGTGCTTCAACTCTAATTGCTCCTGAAG 333
Query 361 TTGAAGAGAAAGGAGGAGAAGTTGAAGACTTTGAGCAACTTGCTAAAAAGCTTGAAGATG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 TTGAAGAGAAAGGAGGAGAAGTTGAAGACTTTGAGCAACTTGCTAAAAAGCTTGAAGATG 393
Query 421 CTTCTCCACTTGAAATCATGGATAAAGCTCTTGAGA-GATTCGGAGACCAAATCGCAATT 479
|||||||||||||||||||||||||||||||||||| | || |||||| |||||||||||
Sbjct 394 CTTCTCCACTTGAAATCATGGATAAAGCTCTTGAGAAGTTT-GGAGACGAAATCGCAATT 452
Query 480 GCTTTTAGTGGAGCTGAAGATGTTGCATTGATTGAATATGCACGTTTAACTGGAAAGCCA 539
||||||||||| |||||||||||||||||||| || || || |||||||||||||||||
Sbjct 453 GCTTTTAGTGGTGCTGAAGATGTTGCATTGATCGAGTACGCTCGTTTAACTGGAAAGCCT 512
Query 540 TTTAGGGTTTTTAGTTTAGATACAGGGAGATTAAACCCTGAAACGTACAGGCTCTTTGAC 599
||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 513 TTTAGGGTTTTTAGTTTAGATACAGGGAGGTTAAACCCGGAAACGTACAGACTCTTTGAT 572
Query 600 GCAGTCGAGAAGCAGTACGGGATTCGAATTGAGTACATGTTTCCTGATGCAGTTGAGGTT 659
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 573 GCTGTCGAGAAGCAGTACGGGATTCGAATCGAGTACATGTTTCCTGATGCAGTTGAGGTT 632
Query 660 CAAGCTTTAGTGAGGAACAAGGGTTTGTTCTCATTCTATGAAGATGGTCATCAAGAGTGT 719
|||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct 633 CAAGCTTTGGTGAGGAACAAGGGTTTGTTCTCTTTCTATGAGGATGGACATCAAGAGTGT 692
Query 720 TGCCGTGTGAGGAAAGTTAGACCTTTGCGTCGTGCTCTTAAGGGTCTTAAAGCTTGGATT 779
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 TGCCGTGTGAGGAAAGTAAGACCTTTGCGTCGTGCTCTTAAGGGTCTTAAAGCTTGGATT 752
Query 780 ACAGGACAGAGGAAAGACCAATCTCCGGGTACGAGATCTGAGATCCCTATTGTTCAGGTT 839
||||||||||||||||| ||||||||||| |||||||| ||||| || ||||||||||||
Sbjct 753 ACAGGACAGAGGAAAGATCAATCTCCGGGGACGAGATCCGAGATTCCGATTGTTCAGGTT 812
Query 840 GATCCAGTGTTTGAAGGGTTAGATGGCGGTGTTGGAAGTCTTGTGAAGTGGAATCCTTTG 899
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 813 GATCCTGTGTTTGAAGGGTTAGATGGTGGTGTTGGAAGTCTTGTGAAGTGGAATCCTTTG 872
Query 900 GCTAATGTTGAAGGA-GCTGATGTGTGGAACTTTCTGAGAACTATGGATGTTCCGGTGAA 958
||||||||||||||| | |||||| ||||||||| |||| || |||||||| ||||||||
Sbjct 873 GCTAATGTTGAAGGAAG-TGATGTTTGGAACTTTTTGAGGACAATGGATGTCCCGGTGAA 931
Query 959 TGCATTGCACGCACAAGGGTATGTGTCAATCGGGTGTGAGCCGTGTACTAGGCCGGTGCT 1018
|||||| ||||| || ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 932 TGCATTACACGCGCAGGGGTATGTGTCAATCGGTTGTGAGCCATGTACTAGGCCGGTGCT 991
Query 1019 TCCAGGCCAACATGAGAGAGAAGGAAGGTGGTGGTGGGAAGATGCTAAAGCTAAAGAATG 1078
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 TCCAGGTCAGCACGAGAGAGAAGGAAGGTGGTGGTGGGAAGATGCTAAAGCTAAAGAATG 1051
Query 1079 TGGTCTACACAAAGGGAACATCAAGGAGGAAGATGGTGCTGCAGACTCAAAGCCTGCTGC 1138
|||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 1052 TGGTCTGCACAAAGGGAACATCAAGGAGGAAGATGGTGCTGCGGATTCAAAGCCTGCGGC 1111
Query 1139 TGTGCAAGAGATATTTGAAAGCAACAATGTGGTTGCATTGAGCAAAGGAGGGGTTGAGAA 1198
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1112 TGTGCAAGAGATATTCGAAAGCAACAATGTGGTTGCATTGAGCAGAGGAGGGGTTGAGAA 1171
Query 1199 TCTTTTGAAGCTAGAGAACCGTAAAGAGGCGTGGTTGGTCGTACTTTACGCTCCTTGGTG 1258
|||| ||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 1172 TCTTATGAAGCTAGAGAATCGCAAAGAGGCGTGGTTGGTTGTACTTTACGCTCCTTGGTG 1231
Query 1259 CCCTTTCTGCCAGGCGATGGAAGCATCGTACATCGAATTGGCTGAGAAACTTGCGGGAAA 1318
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1232 CCCTTTCTGCCAGGCGATGGAAGCATCATACATCGAATTGGCTGAGAAACTTGCGGGAAA 1291
Query 1319 AGGAGTTAAAGTGGCGAAATTCCGAGCTGACGGTGAGCAGAAGGAGTTTGCTAAGCAAGA 1378
||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1292 AGGAGTTAAAGTGGCTAAATTTCGGGCTGACGGTGAGCAGAAGGAGTTTGCTAAGCAAGA 1351
Query 1379 GCTTCAGTTAGGGAGCTTCCCGACGATACTTCTCTTTCCGAAAAGAGCTCCACGGGCTAT 1438
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1352 ACTTCAGTTAGGGAGCTTCCCGACGATACTTCTCTTTCCGAAAAGCGCTCCACGAGCTAT 1411
Query 1439 TAAGTACCCTTCAGAGCATAGAGATGTTGATTCACTCATGTCGTTTGTGAATCTTCTTCG 1498
||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||
Sbjct 1412 TAAGTACCCTTCAGAGCATAGAGATGTTGATTCGCTTATGACGTTTGTGAATCTTCTTCG 1471
Query 1499 GTGAGTTATGAGATAGAAAATAAAAAGAGGGTGATGAAGAATGAAAGAGAATTGAGATGA 1558
||||||||||||| |||||| |||| | ||| ||||||||||||||||||||||||||
Sbjct 1472 ATGAGTTATGAGATCGAAAATCAAAATATTGTGGTGAAGAATGAAAGAGAATTGAGATGA 1531
Query 1559 AGGAGTGATTTCATCTTGGTTATAAT-ATTGTGGACGTCAGAGAATAAACAAGAGTTATT 1617
|||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |
Sbjct 1532 AGGAGTAATTTCATCTTGGTTATAAAGATTGTGGACCTCAGAGAATAAACAAGAGTT-T- 1589
Query 1618 ACTCTTCTACATGACTTTGTATATTTGTATTGTAGGGGtttt 1659
|||||||| |||| |||||||||||||||||||||| ||||
Sbjct 1590 -CTCTTCTATATGATTTTGTATATTTGTATTGTAGGG-TTTT 1629
> Ahg945948 jgi|Araly1|945948|scaffold_702177.1
Length=1417
Score = 706 bits (382), Expect = 0.0
Identities = 924/1173 (79%), Gaps = 88/1173 (8%)
Strand=Plus/Plus
Query 378 GAAGTTGAAGACTTTGAGCAACTTGCTAAAAAGCTTGA-AG-ATGCTTCTCCACTTGAAA 435
|||||||||||||||||| |||| || ||| || || | || |||||||||| ||||| |
Sbjct 261 GAAGTTGAAGACTTTGAGGAACTAGC-AAAGAGATT-AGAGAATGCTTCTCCTCTTGAGA 318
Query 436 TCATGGATAAAGCTCTTGAG-AGATTCGGAGACCAAATCGCAATTGCTTTTAGTGGAGCT 494
|||||||||||||||||||| || || ||| | | || |||||||| ||||||||||||
Sbjct 319 TCATGGATAAAGCTCTTGAGAAGTTTGGGA-ATGACATTGCAATTGCCTTTAGTGGAGCT 377
Query 495 GAAGATGTTGCAT-TGATTGAATATGCACGTTTAACTGGAAAG-CCATT-TAGGGTTTTT 551
||||||||||| | ||||||| ||||| | ||||||||| ||| || || |||||||||
Sbjct 378 GAAGATGTTGC-TCTGATTGAGTATGCTCATTTAACTGG-AAGACC-TTATAGGGTTTTC 434
Query 552 AGTTTAGATACAGGGAGATTAAACCCTGAAACGTACAGGCTCTTTGACGCAGTCGAGAAG 611
||||| |||||||||||||| || || ||||| ||||| ||||| || | || |||||
Sbjct 435 AGTTTGGATACAGGGAGATTGAATCCAGAAACATACAGACTCTTCGATACCGTGGAGAAA 494
Query 612 CAGTACGGGATTCGAATTGAGTACATGTTTCCTGATGCAGTTGAGGTTCAAGCTTTAGTG 671
|| ||||| ||||| |||||||| |||||||||||||| |||||||||||||| || ||
Sbjct 495 CATTACGGTATTCGGATTGAGTATATGTTTCCTGATGCTGTTGAGGTTCAAGCCTTGGTT 554
Query 672 AGGAACAAGGGTTTGTTCTCATTCTATGAAGATGGTCATCAAGAGTGTTGCCGTGTGAGG 731
|||||||||||||||||||| ||||||||||||||||| || ||||| |||||| | | |
Sbjct 555 AGGAACAAGGGTTTGTTCTCTTTCTATGAAGATGGTCACCAGGAGTGCTGCCGTATTA-G 613
Query 732 AAA-GTTAGACCTTTGCGTCGTGCTCTT-AAGGGTCTTA-AAGCTTGGATTACAGGACAG 788
||| || ||||||||| | |||||| || ||||| |||| |||||||| || || |||
Sbjct 614 AAAGGTGAGACCTTTGAGGCGTGCT-TTGAAGGG-CTTACGTGCTTGGATCACTGGTCAG 671
Query 789 AGGAAAGACCAATCTCC-GGGTACGAGATCTGAGATCCCTATTGTTCAGGTTGATCCAGT 847
|||||||| ||||| || ||| || ||||| ||||| || |||||||||||||||||||
Sbjct 672 AGGAAAGATCAATCGCCTGGG-ACAAGATCGGAGATTCCGGTTGTTCAGGTTGATCCAGT 730
Query 848 GTTTGAAGGGTTAGATGGCGGTGTTGGAAGTCTTG-TGAAGTGGAATCCT-TTGGCTAAT 905
||||||||| |||||||| || ||||| ||| ||| ||||||||||||| ||| | |||
Sbjct 731 GTTTGAAGGATTAGATGGTGGAGTTGGTAGT-TTGGTGAAGTGGAATCCGGTTG-CGAAT 788
Query 906 GTTGAAGG-AGCTGATGTGTGGAACTTTCT-GAGAACTATGGATGTTCCGGTGAAT--GC 961
|||||||| | |||||| ||||| ||||| ||| |||||||||||||| || || ||
Sbjct 789 GTTGAAGGGAA-TGATGTTTGGAA-TTTCTTGAGGACTATGGATGTTCCTGTCAACACGC 846
Query 962 ATTGCACGCA-CAAGGGTATGTGTCAATCGGGTGTGAGCCGTGTACTAG-GCCGGTGCTT 1019
|| || || | || ||||| |||||||| |||||||| ||||| || || | | ||
Sbjct 847 -TT-CATGCTGCT-GGTTATGTTTCAATCGGATGTGAGCCATGTACGAGAGCAGTT--TT 901
Query 1020 -CCAGGCCAACATGAGAGAGAAGGAAGGTGGTGGTGGGAAGATGCTAAAGCTAAAGAATG 1078
|| || || |||||||||||||| || |||||||||||||||||||| |||||||| ||
Sbjct 902 GCCGGGTCAGCATGAGAGAGAAGGGAGATGGTGGTGGGAAGATGCTAAGGCTAAAGAGTG 961
Query 1079 TGGTCTACACAAAGGGAACATCAAGGAGGA-AG-A-TGGTG-CTGCAGACT-CAAA-G-C 1131
||| || ||||||||||| ||||||||| | | | ||| | ||| ||| | || | |
Sbjct 962 TGGACTTCACAAAGGGAATATCAAGGAGAATACCAATGGAAAC-GCA-ACTGCTAATGTC 1019
Query 1132 --CTG--C-TGCT-G-TG-CAAGAGATATTTG-AA-AGCAACAATGTGGTTGCA-TTGAG 1180
| | | | | | || | | ||||||| || ||| | ||||| || | | |||||
Sbjct 1020 AACGGGACATCCACGGTGGC--G-GATATTTTCAACAGCGAGAATGTTGT-GAACTTGAG 1075
Query 1181 CAAAGG-AGGGG-TTGAGAATCTTT-TGAAGCTAGAGAACCGTAAAGAGGCGTGGTTGGT 1237
|| || | ||| |||||||| || ||||| |||||||||| |||||||| ||| | ||
Sbjct 1076 CA--GGCAAGGGATTGAGAAT-TTGATGAAGTTAGAGAACCGGAAAGAGGCTTGGATCGT 1132
Query 1238 CGTACTTTACGCTCCTTGGTGCCC-TTTCTGCCAGGCGATGGAAGCATCGTAC-ATCGAA 1295
|| ||||| || || |||||||| ||| || ||||| |||||||| || | || |||
Sbjct 1133 TGTGCTTTATGCACCGTGGTGCCCGTTT-TGTCAGGCAATGGAAGCTTCATTTGAT-GAA 1190
Query 1296 TTGGCTGAGAAACTTG-CGGGAAAAGGAGTTAAAGTGGCGAAATTCCGAGCTGACGGTGA 1354
||||| || || || | ||| ||| || || || || || || || ||||||| |||||
Sbjct 1191 TTGGCAGATAAGCTCGGCGG-AAATGGCGTGAAGGTTGCTAAGTTTAGAGCTGATGGTGA 1249
Query 1355 GCAGAAGGAGTTTGCTAAGCAAG-AGCTT-CAG-TTAGGGAGCTTCCCGACGATACTTCT 1411
|||||||| ||||| || ||| || || ||| || || ||||| || || |||||| |
Sbjct 1250 CCAGAAGGACTTTGCCAAA-AAGGAG-TTGCAGCTT-GGAAGCTTTCCAACAATACTTGT 1306
Query 1412 CTTTCCGAAAAGAGCTCCACGGG-CTATT-AAGTACCCTTCAGAGCATAGAGATGTTGAT 1469
|| || ||| || ||| || | | | | ||||| || |||||| | ||||||||||||
Sbjct 1307 GTTCCC-AAA-GAACTCTTCGAGACCAATCAAGTATCCATCAGAGAAAAGAGATGTTGAT 1364
Query 1470 TCACTC-ATGTCGTTTGT-GAATCTTCTTCGGT 1500
|| || | || ||| | ||||||| ||||||
Sbjct 1365 TC-CTTGACATC-TTTCTTGAATCTTGTTCGGT 1395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66277026300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5