BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G62300.1 Length=1990 Score E Sequences producing significant alignments: (Bits) Value Ahg475116 jgi|Araly1|475116|fgenesh2_kg.2__246__AT1G62300.1 2817 0.0 Ahg329411 jgi|Araly1|329411|fgenesh1_pm.C_scaffold_7001638 379 4e-104 Ahg327396 jgi|Araly1|327396|fgenesh1_pm.C_scaffold_6002616 279 4e-74 > Ahg475116 jgi|Araly1|475116|fgenesh2_kg.2__246__AT1G62300.1 Length=1958 Score = 2817 bits (1525), Expect = 0.0 Identities = 1808/1939 (93%), Gaps = 41/1939 (2%) Strand=Plus/Plus Query 1 ACAGACTCTTTCTTAA--TCTCTCTCTCTTTCAACCAAACCCCTAAACaaaaaaaaaaTA 58 |||||||||||||||| ||||||||||||| ||||||| ||| ||| || || || || Sbjct 1 ACAGACTCTTTCTTAATCTCTCTCTCTCTTTAAACCAAA-CCC-AAA-AACAATAATAT- 56 Query 59 CAttttctga--tctctctaaaaatc-tt--tctcc-ttcgttaatctcgtgatc-tc-t 110 |||||||||| |||||||||||||| || ||||| |||||||||||||||||| || | Sbjct 57 CATTTTCTGATCTCTCTCTAAAAATCTTTAATCTCCTTTCGTTAATCTCGTGATCTTCTT 116 Query 111 -ttc-t-tt-ttctATATATGGACAGAGGATGGTCTGGTCTCACTCTTGATTCATCTTCT 166 ||| | || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 117 CTTCTTCTTCTTCTATATATGGACAGAGGATGGTCTGGTCTCACTCTTGATTCATCTTCT 176 Query 167 CTTGATCTTTTAAACCCTAATCGTATTTCTCATAAGAATCACCGACGTTTCTCAAATCCT 226 || |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| Sbjct 177 CTCGATCTTTTAAACCCTAATCGTATTACTCATAACAATCACCGACGTTTCTCAAATCCT 236 Query 227 TTGGCGATGTCTAGAATTGACGAAGAAGATGATCAGAAGACGAGAATATCAACCAACGGT 286 ||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct 237 TTGACGATGTCTAGAATTGACGAAGATGATGATCAGAAGACGAAAATATCAACCAACGGT 296 Query 287 AGTGAATTTAGGTTTCCGGTGAGTCTCTCAGGTATTCGTGATCGTGAAGATGAAGATTTT 346 ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| Sbjct 297 AGTGAATTTAGGTTTCCCGTGAGTCTCTCCGGTATTCGTGATCGTGAAGATGATGATTTT 356 Query 347 TCATCTGGCGTTGCTGGAGATAATGACCGTGAAGTTCCCGGCGAAGTGGATTTCTTCTCC 406 ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 357 TCATCTGGCGTCGCCGGAGATAATGACCGTGAAGTTCCCGGCGAGGTGGATTTCTTCTCC 416 Query 407 GACAAGAAATCTAGGGTTTGTCGTGAAGACGACGAAGGATTTCGTGTGAAGAAGGAAGAA 466 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 417 GACAAGAAATCTAGGGTTTGTCGTGAAGACGACGACGGATTTCGTGTTAAGAAGGAAGAA 476 Query 467 CAAGATGATCGAACGGACGTAAATACCGGTTTGAATCTTCGAACAACTGGTAATACAAAG 526 ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| Sbjct 477 CAAGATGATCGAACGGATGTAAACACCGGTTTGAATCTTCGAACAACGGGTAATACAAAG 536 Query 527 AGTGATGAGTCAATGATCGATGATGGAGAATCTTCCGAAATGGAAGATAAGCGTGCGAAA 586 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 537 AGTGATGAGTCAATGATCGACGATGGAGAATCTTCTGAAATGGAAGATAAGCGTGCGAAA 596 Query 587 AATGAGTTGGTGAAATTACAAGATGAGTTGAAGAAAATGACAATGGATAATCAAAAGCTT 646 ||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 597 AATGAGTTGGTTAAGTTACAAGATGAGTTGAAGAAAATGACAATGGACAATCAAAAGCTT 656 Query 647 AGAGAATTGCTTACACAAGTTAGCAACAGTTACACTTCACTTCAGATGCATCTTGTTTCA 706 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 657 AGAGAATTGCTTACACAAGTGAGCAACAGTTACACTTCACTTCAGATGCATCTTGTTTCA 716 Query 707 CTAATGCAGCAACAGCAACAACAGAACAATAAGGTAATAGAAGCTGCTGAGAAGCCTGAG 766 |||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||| Sbjct 717 CTAATGCAGCAACAACAACAACAGAATAATAAGGTAATAGAGGCTGCTGAGAAACCTGAG 776 Query 767 GAGACGATAGTACCAAGGCAATTTATTGATTTAGGCCCTACGAGAGCAGTAGGTGAGGCC 826 |||||||||||||| |||||||||||||||||||||||||| |||||||| || |||||| Sbjct 777 GAGACGATAGTACCGAGGCAATTTATTGATTTAGGCCCTACAAGAGCAGTGGGCGAGGCC 836 Query 827 GAGGATGTGTCAAATTCTTCATCCGAAGATAGAACTCGTTCGGGGGGTTCTTCTGCAGCC 886 |||||||| || ||||||||||||||||||||||||||||| || ||||||||||| ||| Sbjct 837 GAGGATGTATCGAATTCTTCATCCGAAGATAGAACTCGTTCAGGCGGTTCTTCTGCGGCC 896 Query 887 GAGAGGCGTAGTAACGGGAAGAGACTTGGGCGTGAAGAAAGCCCCGAAACTGAGTCCAAC 946 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 897 GAGAGGCGTAGTAACGGGAAGAGACTTGGGCGTGAAGAAAGTCCCGAAACCGAGTCCAAC 956 Query 947 AAAATTCAGAAGGTGAATTCTACTACCCCGACGACATTTGATCAAACCGCTGAAGCTACG 1006 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 957 AAAATTCAGAAGGTGAATTCTACTACCCCGACGACATTTGATCAATCCGCTGAAGCTACG 1016 Query 1007 ATGAGGAAAGCCCGTGTCTCCGTTCGTGCCCGATCGGAAGCTCCGATGATAAGCGATGGA 1066 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 1017 ATGAGGAAAGCCCGTGTCTCGGTTCGTGCCCGATCGGAAGCTCCCATGATAAGCGATGGA 1076 Query 1067 TGTCAATGGAGAAAATATGGCCAGAAGATGGCCAAAGGGAATCCTTGTCCGCGGGCATAT 1126 |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 1077 TGTCAATGGAGAAAGTATGGCCAGAAGATGGCTAAAGGGAATCCTTGTCCTCGGGCATAT 1136 Query 1127 TACCGCTGCACGATGGCCACGGGCTGTCCCGTTCGCAAACAAGTTCAACGTTGCGCGGAA 1186 ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||| Sbjct 1137 TACCGCTGCACAATGGCCACGGGTTGTCCCGTTCGCAAACAGGTTCAACGTTGTGCGGAA 1196 Query 1187 GACAGATCAATTCTGATTACAACCTACGAGGGAAACCATAACCATCCGTTGCCGCCAGCC 1246 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 1197 GACAGATCAATTCTGATAACGACCTACGAGGGAAACCATAACCATCCGTTGCCGCCAGCC 1256 Query 1247 GCGGTAGCCATGGCTTCTACCACCACGGCGGCGGCTAACATGTTGCTATCCGGGTCAATG 1306 ||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct 1257 GCGGTGGCCATGGCTTCTACCACCACGGCTGCGGCTAACATGTTGCTATCTGGATCAATG 1316 Query 1307 TCTAGTCACGACGGGATGATGAACCCTACAAATTTACTAGCTAGGGCTGTTCTTCCTTGC 1366 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1317 TCTAGTCAAGATGGGATGATGAACCCTACAAATTTACTAGCTAGGGCTGTTCTTCCTTGC 1376 Query 1367 TCCACAAGCATGGCAACAATCTCAGCCTCCGCGCCGTTTCCAACCGTCACATTAGACCTC 1426 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1377 TCCACAAGCATGGCCACAATCTCAGCCTCCGCGCCGTTTCCCACCGTCACATTAGACCTC 1436 Query 1427 ACCCACTCACCTCCGCCTCCTAATGGTTCCAATCCTTCCTCTTCCGC-G--GCTACCAAC 1483 ||||||||||| |||||| ||||||||||||| |||||||||||||| | || |||| | Sbjct 1437 ACCCACTCACCACCGCCTTCTAATGGTTCCAACCCTTCCTCTTCCGCAGCCGCCACCAGC 1496 Query 1484 AACAACCACAACTCACTGA-TGCAGCGGCCGCAACAACAACAACAGCAAATGACGAACTT 1542 |||||| ||||| ||| | | || | ||||| | ||||||||||||||||| || Sbjct 1497 AACAACAACAAC-CACA-ACT-CATTGAT-GCAACGGCCGCAACAGCAAATGACGAATTT 1552 Query 1543 ACCTCCGGGAATGCTACCTCATGTAATAGGCCAGGCATTGTATAACCAATCCAAGTTCTC 1602 ||| ||||| |||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1553 ACCCCCGGGTATGCTACCTCATGTAATAGGTCAAGCATTGTATAACCAATCCAAGTTCTC 1612 Query 1603 GGGGCTGCAGTTCTCTGGTGGCTCTCCCTCGACGGCAGCGTTTTCTCAGTCACACGCGGT 1662 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1613 AGGGCTGCAGTTCTCCGGTGGCTCTCCCTCGACGGCAGCGTTTTCTCAGTCACACGCGGT 1672 Query 1663 GGCTGATACAATAACGGCACTCACAGCTGACCCGAATTTCACGGCGGCTCTTGCAGCCGT 1722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1673 GGCTGATACAATAACGGCACTCACAGCTGACCCGAATTTCACGGCGGCTCTTGCAGCCGT 1732 Query 1723 TATTTCTTCTATGATCAATGGTACGAACCACCACGACGGCGAAGGAAACAACAAAAATCA 1782 |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||| Sbjct 1733 TATTTCTTCTATGATCAATGGTTCGAACCACCACGACGGCCAAGGAAACAACAAAAGTCA 1792 Query 1783 ATAGAAAAATATTACAttttttttttGGGTATCTACAttttttttCCAACTGGGTTATAG 1842 |||||||||||||||| ||||||||| | | | ||||| | ||||||||||||| Sbjct 1793 ATAGAAAAATATTACAATTTTTTTTT---T-T-T---TTTTT---C-AACTGGGTTATAG 1840 Query 1843 GAAACAGAGAGTTTATTTCATTGATTCACATTTGTTCT---GTTTCGTACCAAAATCCCA 1899 |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| Sbjct 1841 GAAACAGAGAGTTTATTTCATTGATTCACATTTGTTCTTCTGTTTCGTACCAAAATTCCA 1900 Query 1900 GTAAATATACAAAAGCAAA 1918 ||||||||||||||| ||| Sbjct 1901 GTAAATATACAAAAGAAAA 1919 > Ahg329411 jgi|Araly1|329411|fgenesh1_pm.C_scaffold_7001638 Length=1617 Score = 379 bits (205), Expect = 4e-104 Identities = 370/450 (82%), Gaps = 10/450 (2%) Strand=Plus/Plus Query 993 CCGCTGAAGCTACGATGAGGAAAGCCCGTGTCTCCGTTCGTGCCCGATCGGAAGCTCCGA 1052 |||| ||||| || ||| |||||||||||||||| |||||||||||||| |||||| ||| Sbjct 824 CCGCAGAAGCCACCATGCGGAAAGCCCGTGTCTCAGTTCGTGCCCGATCTGAAGCTGCGA 883 Query 1053 TGATAAGCGATGGATGTCAATGGAGAAAATATGGCCAGAAGATGGCCAAAGGGAATCCTT 1112 |||||||||||||||||||||||||||| || || || || ||||| ||||| || || | Sbjct 884 TGATAAGCGATGGATGTCAATGGAGAAAGTACGGACAAAAAATGGCTAAAGGAAACCCGT 943 Query 1113 GTCCGCGGGCATATTACCGCTGCACGATGGCCACG-GGCTGTCCCGTTCGCAAACAAGTT 1171 ||||||| || ||||| |||||||| |||||| | || ||||| |||||||| ||||| Sbjct 944 GTCCGCGAGCTTATTATCGCTGCACAATGGCCG-GTGGATGTCCTGTTCGCAAGCAAGTG 1002 Query 1172 CAACGTTGCGCGGAAGACAGATCAATTCTGATTACAACCTACGAGGGAAACCATAACCAT 1231 ||||||||||| ||||||||||| ||||| || || |||||||| |||||||| |||||| Sbjct 1003 CAACGTTGCGCAGAAGACAGATCTATTCTCATAACCACCTACGAAGGAAACCACAACCAT 1062 Query 1232 CCGTTGCCGCCAGCCGCGGTAGCCATGGCTTCTACCACCACGGCGGCGGCTAA-CATGTT 1290 || | || |||||||| | |||||||| || || ||||| || || || || |||| | Sbjct 1063 CCACTCCCACCAGCCGCTATGGCCATGGCCTCAACAACCACCGCAGCCGC-AAGCATGCT 1121 Query 1291 GCTATCCGGG-TCAATGTCTAGTCACGACGGGATGATGAACCCTACAAATTTACT-AGCT 1348 || || ||| |||||||| || || ||||| | |||||||| ||||| | || |||| Sbjct 1122 CCTCTC-GGGCTCAATGTCGAGCCAAGACGGTTTAATGAACCCAACAAACCT-CTTAGCT 1179 Query 1349 AGGGCTGTTCTT-CCTTGCTCCACAAGCATGGCAACAATCTCAGCCTCCGCGCCGTTTCC 1407 | || | ||| ||||||||| |||||||||| ||||||||||||||||| || || || Sbjct 1180 CGAGCCAT-CTTGCCTTGCTCCTCAAGCATGGCCACAATCTCAGCCTCCGCACCATTCCC 1238 Query 1408 AACCGTCACATTAGACCTCACCCACTCACC 1437 |||| ||||||| ||||||||| | ||||| Sbjct 1239 AACCATCACATTGGACCTCACCAATTCACC 1268 > Ahg327396 jgi|Araly1|327396|fgenesh1_pm.C_scaffold_6002616 Length=1590 Score = 279 bits (151), Expect = 4e-74 Identities = 350/446 (78%), Gaps = 13/446 (3%) Strand=Plus/Plus Query 998 GAAGCTACGATGAGGAAAGCCCGTGTCTCCGTTCGTGCCCGATCGGAAGCT-CCGATGAT 1056 ||||| || ||| | ||||||||||| || |||||||| ||||| |||||| | ||| | Sbjct 817 GAAGCCACCATGCGTAAAGCCCGTGTTTCGGTTCGTGCTCGATCCGAAGCTAAC-ATGCT 875 Query 1057 AAGCGATGGATGTCAATGGAGAAAATATGGCCAGAAGATGGCCAAAGGGAATCCTTGTCC 1116 ||||||||||||||||||||||||||| || ||||| ||||| ||||| || || || || Sbjct 876 AAGCGATGGATGTCAATGGAGAAAATACGGGCAGAAAATGGCGAAAGGAAACCCGTGCCC 935 Query 1117 GCGGGCATATTACCGCTGCACGATGGCCACGGGCTGTCCCGTTCGCAAACAAGTTCAACG 1176 || || |||||||| ||||| |||||| || || ||||||||||| ||||| ||||| Sbjct 936 TCGAGCTTATTACCGTTGCACAATGGCCGTTGGATGCCCCGTTCGCAAGCAAGTGCAACG 995 Query 1177 TTGCGCGGAAGACAGATCAATTCTGATTACAACCTACGAGGGAAACCATAACCATCCGTT 1236 |||||||||||||||| | ||||| || ||||||||||| ||||||||||||||||| || Sbjct 996 TTGCGCGGAAGACAGAACCATTCTCATAACAACCTACGAAGGAAACCATAACCATCCATT 1055 Query 1237 GCCGCCAGCCGCGGT-AGCCATGGCTTCTACCACCACGGCGGCGGCTAA-CATGTTGCTA 1294 || || || || | | | |||||||| ||||| || || || || || |||| | || Sbjct 1056 ACCTCCCGCGGCTATGAAC-ATGGCTTCAACCACAACCGCAGCCGC-AAGCATGCTCCTC 1113 Query 1295 TCCGGGTC-A-A-TGTCTAGTCACGACGGGATGATGAACCCTACAAATTTACTAG-CTAG 1350 || || || | | |||| | || || || | |||||||| |||||| | || | | | Sbjct 1114 TCAGGCTCCACAATGTCGAACCAAGATGGTTTAATGAACCCAACAAATCT-CTTGGCCCG 1172 Query 1351 GGCTGTTCTT-CCTTGCTCCACAAGCATGGCAACAATCTCAGCCTCCGCGCCGTTTCCAA 1409 | | ||| || || ||| |||||||||| || ||||||||||| || || || |||| Sbjct 1173 AACCAT-CTTACCGTGTTCCTCAAGCATGGCCACTATCTCAGCCTCTGCACCATTCCCAA 1231 Query 1410 CCGTCACATTAGACCTCACCCACTCA 1435 || | |||||||||||||| ||||| Sbjct 1232 CCATTACATTAGACCTCACAGACTCA 1257 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74809241180 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5