BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62370.1
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924762 jgi|Araly1|924762|scaffold_200323.1 931 0.0
> Ahg924762 jgi|Araly1|924762|scaffold_200323.1
Length=649
Score = 931 bits (504), Expect = 0.0
Identities = 580/616 (94%), Gaps = 8/616 (1%)
Strand=Plus/Plus
Query 1 ATGAGTCAACTCGGAGATTTGCTTAGAGAATCAGAAGATGGAACAAGAAGTGAGAGGACG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGAGTCAACTCGGAGATTTGCTTAGAGAATCAGAAGATGGAACAAGAAGTGAGAGGACG 80
Query 61 ATGATGATGAGTTTGCTCGAAGAAGATCAAATCAACGGTGGAGATAGAACGATGAGCAAA 120
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||
Sbjct 81 ATGATGATGAGTTTGCTTGAAGAAGATCAAATCAACGGTGGAGATCGAACGATGAGTAAA 140
Query 121 TGGACTACGTTAAAGCAACGGCTGAGATTTGATTGGGTTGGTTGTTGTGGTAAGCCTCTT 180
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 141 TGGACTACGTTGAAGCAACGGCTGAGATTTGATTGGGTTGGTTGTTATGGTAAGCCTCTT 200
Query 181 ACTCTGCGTCTCAGACAAGCGGAGACACCAATCGTCGTCGATGATGATGACGACGAAGAA 240
|||||||||||||||||| |||| |||||||||||||||||||||||||| || | |||
Sbjct 201 ACTCTGCGTCTCAGACAATCGGAAACACCAATCGTCGTCGATGATGATGATGA--A-GAA 257
Query 241 GAAAGTCAAAACCAGGTCGTTGACTTTTCGGATCCGGGTACGGGTACGGAGTTGGATTGT 300
||||||||||||| |||| ||||| || ||| | ||||||||||||||||||||||||||
Sbjct 258 GAAAGTCAAAACCGGGTCATTGACCTTGCGGGTTCGGGTACGGGTACGGAGTTGGATTGT 317
Query 301 TTGACACGTGGC-TCAACGAGGAACCTTGCAGAGGCTTTAGCGGAGGAGAGATTAGCGCA 359
|||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 TTGACACGTGGCGTGA-CGAGGAACCTTGCAGAGGCTTTAGCGGAGGAGAGATTAGCGCA 376
Query 360 CGTGACGGAGGAGGAGACAGCAGTTACTAAAGTACCGTTGATGAGGTTGCTTGCGGAATC 419
|||||| | ||||||| | ||||| ||||||||||||||||||||||||||||||||||
Sbjct 377 CGTGACTGCGGAGGAGGCTTCAGTTGCTAAAGTACCGTTGATGAGGTTGCTTGCGGAATC 436
Query 420 GGACGGTTGTGATTCGACGACGACGTGGTTGGGTAATGATCCGCTGTGTTGTGTGTGTAT 479
|||||||||||||||||||||| || ||||||||||||||| ||||||| ||||||||
Sbjct 437 GGACGGTTGTGATTCGACGACGT-GT--TTGGGTAATGATCCGGTGTGTTGCGTGTGTAT 493
Query 480 GGGAAGAGAGAAAGGTGCGGCTTTTATTCCCTGTGGACATACGTATTGTAGAGTTTGTTC 539
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 494 GGGAAGAGAGAAAGGTGCGGCTTTTATTCCCTGTGGACATATGTATTGTAGAGTGTGTTC 553
Query 540 AAGAGAGATTTGGATGAATCGTGGGACGTGTCCTCTTTGTAACCGTTCGATCTTTGACGT 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 GAGAGAGATTTGGATGAATCGTGGGACGTGTCCTCTTTGTAACCGTTCGATCTTTGACGT 613
Query 600 TCTTGATCTTTACTGA 615
||||||||| ||||||
Sbjct 614 TCTTGATCTCTACTGA 629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22492521030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5