BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62560.1
Length=1576
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475092 jgi|Araly1|475092|fgenesh2_kg.2__222__AT1G62560.1 2198 0.0
Ahg315143 jgi|Araly1|315143|fgenesh1_pm.C_scaffold_2000176 1371 0.0
Ahg924738 jgi|Araly1|924738|scaffold_200299.1 1055 0.0
Ahg910977 jgi|Araly1|910977|Al_scaffold_0001_1231 377 1e-103
> Ahg475092 jgi|Araly1|475092|fgenesh2_kg.2__222__AT1G62560.1
Length=1414
Score = 2198 bits (1190), Expect = 0.0
Identities = 1343/1418 (95%), Gaps = 5/1418 (0%)
Strand=Plus/Plus
Query 90 ATGGCACCAGCTCAAAACCAAATCACTTCTAAACACGTGGCAGTGATCGGAGCCGGACCA 149
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGCACCAGCACAAAACCCAATCACTTCTAAACACGTGGCAGTGATCGGAGCCGGAGCA 60
Query 150 GCCGGTCTCATAACGTCTAGGGAGCTCCGTCGTGAAGGTCACAGTGTAGTTGTGTTTGAA 209
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 61 GCCGGTATCATAACGTCTAGGGAGCTCCGTCGTGAAGGTCACAGTGTCGTTGTGTATGAA 120
Query 210 CGGGAGAAACAAGTCGGTGGTCTATGGGTTTACACACCTAAATCCGATTCCGATCCACTT 269
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 121 CGGGAGAAACAAGTGGGTGGTCTCTGGGTTTACACACCTAAATCCGATTCCGACCCACTT 180
Query 270 AGCCTTGACCCCACCCGATCCAAAGTCCACTCGAGCATCTACGAGTCTCTCCGAACCAAT 329
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 AGCCTTGACCCGACCCGATCCAAAGTCCACTCTAGCATCTACGAGTCTCTCCGAACCAAT 240
Query 330 GTCCCGAGAGAAAGTATGGGTGTCAGGGACTTCCCGTTTTTGCCACGTTTCGATGACGAG 389
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GTCCCGAGAGAAAGTATGGGTGTCAGGGACTTCCCGTTTTTGCCACGTTTTGATGACGAG 300
Query 390 TCAAGAGACGCGAGACGTTATCCAAATCATAGGGAAGTTCTTGCGTATATTCAAGACTTT 449
||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 TCAAGAGACCCGAGACGGTATCCAAATCACAGGGAAGTTCTTGCGTATATTCAAGACTTT 360
Query 450 GCTAGAGAGTTTAAAATAGAGGAGATGATCCGGTTCGAGACCGAGGTGGTTCGCGTTGAA 509
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 GCTAGAGAGTTTAAAATAGAGGAGATGATCCGGTTCGAGACCGAGGTGGTTCGGGTTGAA 420
Query 510 CCGGTTGACAACGGGAACTGGAGGGTCCAGTCGAAAAACTCCGGCGGGTTCTTGGAAGAT 569
|||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 421 CCGGTTGAT---GGGAAATGGAGGGTCCAGTCCAAAAAATCCGGCGGGTTCTTGGAAGAT 477
Query 570 GAGATCTATGACGCCGTCGTGGTTTGCAATGGTCACTATACAGAACCAAATATTGCTCAT 629
|||||||||||||||||||||||||||||||| || ||||| |||||||| ||| |||||
Sbjct 478 GAGATCTATGACGCCGTCGTGGTTTGCAATGGACATTATACTGAACCAAACATTACTCAT 537
Query 630 ATTCCTGGTATAAAATCGTGGCCAGGAAAGCAGATTCATAGCCACAACTATAGAGTTCCT 689
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 538 ATTCCTGGTATTAAATCGTGGCCAGGAAAGCAGATCCATAGCCACAACTACAGAGTTCCT 597
Query 690 GATCCATTCGAAAACGAGGTGGTGGTGGTGATAGGAAATTTTGCGAGTGGTGCCGATATT 749
|||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||
Sbjct 598 GATCCATTCGAAAACGAGGTAGTGGTGGTGATTGGAAATTTTGCAAGCGGTGCCGATATT 657
Query 750 AGTAGGGACATAGCTAAGGTCGCAAAAGAAGTCCACATTGCGTCTAGAGCAAGGGAACCC 809
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 658 AGTAGGGACATAGCTAAGGTCGCGAAAGAAGTCCACATTGCGTCTAGAGCAAGGGAACCC 717
Query 810 CACACATACGAGAAGATTTCCGTTCCCCAAAACAATCTATGGATGCATTCCGAAATCGAC 869
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 718 CACACATACGAGAAGATTTCCGTTCCCCAGAACAATCTATGGATGCATTCCGAAATCGAC 777
Query 870 ACCACCCATGAGGATGGGTCGATTGTTTTCAAAAACGGGAAGGTGATATTTGCTGATAGC 929
|| |||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||
Sbjct 778 ACAACCCATGAGGATGGGTCGATTGTTTTCAAAAACGGGAAAGTGGTATTCGCTGATAGC 837
Query 930 ATTGTGTATTGCACCGGGTACAAGTATAACTTCCCATTTCTTGAAACAAATGGCTATTTG 989
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 838 ATTGTGTATTGCACCGGGTACAAATATAACTTTCCATTTCTTGAAACCAATGGCTATTTG 897
Query 990 CGCATTGATGAAAAACGTGTTGAACCTCTATACAAGCATGTCTTTCCACCAGCGCTTGCC 1049
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 898 CGCATTGATGAAAAACGCGTTGAACCTCTATACAAGCATGTCTTTCCACCCGCGCTTGCC 957
Query 1050 CCTGGACTTGCTTTCGTTGGTTTGCCAGCAATGGGGATAGTATTTGTTATGTTTGAAATC 1109
|| |||||| ||||||| ||| | ||||||||||||||||||| ||||||||||||||||
Sbjct 958 CCCGGACTTTCTTTCGTAGGTGTACCAGCAATGGGGATAGTATATGTTATGTTTGAAATC 1017
Query 1110 CAAAGCAAATGGGTGGCAGCAGTCTTGTCAGGACGAGTTACACTTCCCTCAACAGATAAG 1169
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||
Sbjct 1018 CAAAGCAAATGGGTGGCAGCAGTCTTGTCAGGACGAGTTACACTTCCTTCACCAGAAAAA 1077
Query 1170 ATGATGGAAGATATTAATGCGTGGTATGCGTCGCTTGATGCCTTAGGTATTCCCAAGAGA 1229
||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1078 ATGATAGAAGATATTAATGCTTGGTATGCGTCGCTTGATGCGTTAGGTATTCCCAAGAGA 1137
Query 1230 CATACTCATACGATAGGTAGAATTCAGAGTGAGTACCTCAATTGGGTCGCGAAAGAATCT 1289
||||| ||||||||||||||||||||||| ||| ||||||||||||||||| |||||| |
Sbjct 1138 CATACCCATACGATAGGTAGAATTCAGAGGGAGCACCTCAATTGGGTCGCGGAAGAATGT 1197
Query 1290 GGTTGTGAACTCGTAGAACGTTGGAGAGGTCAAGAAGTTGACGGCGGATACCTGAGACTT 1349
||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1198 GGTTGTGAACTTGTTGAACGTTGGAGAGGTCAAGAAGTTGACGGCGGATACCTCAGACTT 1257
Query 1350 GTGGCCCATCCAGAAACTTACCGTGATGAATGGGACGACGATGAACTCATAGAAGAAGCG 1409
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1258 GTCGCCCATCCAGAAACTTACCGTGATGAATGGGACGACGATGAACTTATAGAAGAAGCG 1317
Query 1410 TACAATGATTTTTCTAGGAAGAAGTTGATTAGTGTTGATCCTTCTTATTACCTCGAAAAT 1469
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1318 TACAAAGATTTTTCTAGGAAGAAGTTGATTAGTTTTGATCCTTCTTATTACCTCGAAAAT 1377
Query 1470 GG-AAGATGATCTGCGCCAATAGTGCCGACTTGTTTTT 1506
|| || ||||| |||| |||||||||||||||||||||
Sbjct 1378 GGCAA-ATGATATGCGTCAATAGTGCCGACTTGTTTTT 1414
> Ahg315143 jgi|Araly1|315143|fgenesh1_pm.C_scaffold_2000176
Length=1386
Score = 1371 bits (742), Expect = 0.0
Identities = 1179/1390 (85%), Gaps = 29/1390 (2%)
Strand=Plus/Plus
Query 90 ATGGCACCAGC-TCAAAACCAAATC-ACTTCTAAACACGTGGCAGTGATCGGAGCCGGAC 147
|||| |||| | || ||||| |||| || ||| |||| ||||| ||||| |||||||||
Sbjct 1 ATGGAACCAACTTC-AAACCCAATCAAC-TCTCAACATGTGGCGGTGATTGGAGCCGGAG 58
Query 148 CAGCCGGTCTCATAAC-GTCTAGGGAGCTCCGTCGTGAAGGTCACAGTGTAGTTGTGTTT 206
|||||||||||||||| | |||| ||||||| |||||||||||||| || || || |||
Sbjct 59 CAGCCGGTCTCATAACAG-CTAGAGAGCTCCTTCGTGAAGGTCACACCGTTGTCGTCTTT 117
Query 207 GAACGGGAGAAACAAGTCGGTGGTCTATGGGTTTACACACCTAAATCCGATTCCGATCCA 266
|||||||||||| |||| || ||||| ||| | || |||||||| |||| ||||| ||
Sbjct 118 GAACGGGAGAAAGAAGTGGGAGGTCTTTGGATCTATTCACCTAAAACCGAATCCGACCCG 177
Query 267 CTTAGCCTTGACCCCACCCGATCCAAAGTCCACTCGAGCATCTACGAGTCTCTCCGAACC 326
|||||||| || || | ||||| || |||||| |||||| ||||||||||||||||||||
Sbjct 178 CTTAGCCTCGATCCGAACCGATACATAGTCCATTCGAGCGTCTACGAGTCTCTCCGAACC 237
Query 327 AATGTCCCGAGAGAAAGTATGGGTGTCAGGGAC-TTCCCGTTTTTGCCACGTTTCGATGA 385
||||||||||||||||| ||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 238 AATGTCCCGAGAGAAAGCATGGGTGTCAGGGACTTTCCC-TTTTTGCCACGTTTTGATGA 296
Query 386 CGAGTCAAGAGACGCGAGACGTTATCCAAATCATAGGGAAGTTCTTGCGTATATTCAAGA 445
| ||||||||| ||||||| || || | ||| || |||||||||||||| |||||||
Sbjct 297 TGTCTCAAGAGACCCGAGACGGTACCCGAGTCACAGAGAAGTTCTTGCGTACCTTCAAGA 356
Query 446 CTTTGCTAGAGAGTTTAAAATAGAGGAGATGATCCGGTTCGAGACCGAGGTGGTTCGCGT 505
||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| ||
Sbjct 357 CTTTGCTAGAGAGTTTAAAATAGAGGACATGGTCCGGTTCGAGACCGAGGTCGTTCGAGT 416
Query 506 TGAACCGGTTGACAACGGGAACTGGAGGGTCCAGT-CGAAAAACTCCGGCG-GGTTCTTG 563
||||||||||| ||||||| |||||||||| || ||| ||| | ||| | | || ||
Sbjct 417 TGAACCGGTTG---ACGGGAAATGGAGGGTCCGGTCCGAGAAA-T-CGG-GAGATTGTTC 470
Query 564 GAA-GATGAGATCTATGACGCCGTCGTGGTTTGCAATGGTCACTATACAGAACCAAATAT 622
|| |||||||||| ||||||||| |||||||||| ||| || |||||||||||||| |
Sbjct 471 CAACGATGAGATCTTTGACGCCGTTGTGGTTTGCAGTGGACATTATACAGAACCAAACGT 530
Query 623 TGCT-CATATTCCTGGTATAAAATCGTGGCCAGGAAAGCAGATTCATAGCCACAACTATA 681
| | ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 531 CG-TGCATATTCCTGGTATAAATTCGTGGCCAGGAAAGCAGATCCATAGCCACAACTACA 589
Query 682 GAGTTCCTGATCCATTCGAAAACGAGGTGGTGGTGGTGATAGGAAATTTTGCGAGTGGTG 741
||||||||| |||||||||||||||||||||||| ||||| ||||||||||| || ||||
Sbjct 590 GAGTTCCTGGTCCATTCGAAAACGAGGTGGTGGTAGTGATCGGAAATTTTGCAAGCGGTG 649
Query 742 CCGATATTAGTAGGGACATAGCTAAGGTCGCAAAAGAAGTCCACATTGCGTCTAGAGCAA 801
| ||||||||||||||||||||| ||||||| |||||||| || |||||||||||||| |
Sbjct 650 CTGATATTAGTAGGGACATAGCTCAGGTCGCGAAAGAAGTTCATATTGCGTCTAGAGCGA 709
Query 802 GGGAACCCCACACATACGAGAAGATTTCC-GTTCCCCAAAACAATCTATGGATGCATTCC 860
| ||| | | |||||| | ||| |||| || || || ||||| |||||||| ||||||
Sbjct 710 GTGAATCTGATACATACAAAAAG-CTTCCTGTGCCTCATAACAACCTATGGATTCATTCC 768
Query 861 GAAATCGACACCACCCATGAGGATGGGTCGATTGTTTTCAAAAACGGGAAGGTGATATTT 920
|| || |||||| ||||||| |||||||| |||||||| ||||||||||||||| ||| |
Sbjct 769 GAGATAGACACCGCCCATGAAGATGGGTCAATTGTTTTTAAAAACGGGAAGGTGGTATAT 828
Query 921 GCTGATAGCATTGTGTATTGCACCGGGTACAAGTATAACTTCCCATTTCTTGAAACAAAT 980
|| ||||||||||| |||||||| || ||||||||| ||||||||||||||||||| |||
Sbjct 829 GCAGATAGCATTGTATATTGCACTGGATACAAGTATCACTTCCCATTTCTTGAAACCAAT 888
Query 981 GGCTATTTGCGCATTGATGAAAAACGTGTTGAACCTCTATACAAGCATGTCTTTCCACCA 1040
|||||| || ||||||||||||| || |||| ||||||||||||||||| ||||||||
Sbjct 889 GGCTATATGAGCATTGATGAAAACCGCATTGATCCTCTATACAAGCATGTTTTTCCACCC 948
Query 1041 GCGCTTGCCCCTGGACTTGCTTTCGTTGGTTTGCCAGCAATGGGGATAGTA-TTTGTTAT 1099
|||||||||||||| ||| ||||| ||||||| ||||| ||||| ||| | ||||||||
Sbjct 949 GCGCTTGCCCCTGGTCTTTCTTTCATTGGTTTACCAGCGATGGGCATA-CAGTTTGTTAT 1007
Query 1100 GTTTGAAATCCAAAGCAAATGGGTGGCAGCAGTCTTGTCAGGACGAGTTACACTTCCCTC 1159
||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||
Sbjct 1008 GTTTGAAATCCAAAGCAAATGGGTGGCAGCAGTCTTGGCAGGACGGGTTAAACTTCCCTC 1067
Query 1160 AACA-GATAAGATGATGGAAGATATTAATGCGTGGTATGCGTCGCTTGATGCCTTAGGTA 1218
| || ||||||||||| ||||| |||||| |||||||||| |||||| |||| ||||||
Sbjct 1068 A-CAAGATAAGATGATAGAAGACATTAATTCGTGGTATGCATCGCTTCATGCGTTAGGTC 1126
Query 1219 TTCCCAAGAGACATACTCATACGATAGG-TAGAATTCAGAGTGAGTACCTCAATTGGGTC 1277
||||||| ||| |||| |||| || || || ||||||| ||||||||| |||||| ||
Sbjct 1127 TTCCCAAAAGATATACACATAA-ATTGGGTAAAATTCAGTCTGAGTACCTGAATTGGATC 1185
Query 1278 GCGAAAGAATCTGGTTGTGAACTCGTAGAACGTTGGAGAGGTCAAGAAGTTGACGGCGGA 1337
||| |||||| ||| ||| ||||| |||| ||||||| |||| || | | | |||||
Sbjct 1186 GCGGAAGAATGTGGATGTCCGCTCGTTGAACATTGGAGAAATCAACAAATCGTCCGCGGA 1245
Query 1338 TACCTGAGACTTGTGGCCCATCCAGAAACTTACCGTGATGAATGGGACGACGATGAACTC 1397
||| ||||||||| |||| ||||||||||| || ||||||||||||||| |||| ||
Sbjct 1246 TACGAGAGACTTGTCTCCCAACCAGAAACTTATCGCGATGAATGGGACGACAATGATCTT 1305
Query 1398 ATAGAAGAAGCGTACAATGATTTTTCTAGGAAGAAGTTGATTAGTGT-TGATCCTTCTTA 1456
|| |||||||| ||||| || ||| |||||| ||||| |||||| | | ||||||| |
Sbjct 1306 ATGGAAGAAGCTTACAAGGAATTTGGTAGGAATAAGTTAATTAGT-TCTCATCCTTCCCA 1364
Query 1457 TTACCTCGAA 1466
|| ||| |||
Sbjct 1365 TTTCCTTGAA 1374
> Ahg924738 jgi|Araly1|924738|scaffold_200299.1
Length=1426
Score = 1055 bits (571), Expect = 0.0
Identities = 1126/1390 (81%), Gaps = 53/1390 (4%)
Strand=Plus/Plus
Query 90 ATGGCACCAGCT-CAAAACCAAATCACTTCTAAACACGTGGCAGTGATCGGAGCCGGACC 148
|||||||||||| | | || ||||| |||| |||||||||| ||||||||||||||| |
Sbjct 21 ATGGCACCAGCTCCTAGTCC-AATCAATTCTCAACACGTGGCGGTGATCGGAGCCGGAGC 79
Query 149 AGCCGGTCTCA-TA-ACGTCTAGGGAGCTCCGTCGTGAAGGTCACAGTGTAGTTGTGTTT 206
| ||||| | | || || | || |||||||||||||||||||||| || ||||| ||
Sbjct 80 ATCCGGT-TTAGTAGCCG-CCAGAGAGCTCCGTCGTGAAGGTCACACCGTCGTTGTCCTT 137
Query 207 GAACGGGAGAAACAAGTCGGTGGTCTATGGGTTTACACACCT-AAATCCGATTCCGATCC 265
|| || ||||||||||| |||||||| ||||||||||||||| ||| |||| ||||| |
Sbjct 138 GACCGAGAGAAACAAGTAGGTGGTCTTTGGGTTTACACACCTGAAA-CCGAGTCCGA-CG 195
Query 266 A-CTTA-GCCTTGACCCCACCCGATCCAAAGTCCACTCGAGCATCTACGAGTCTCTCCGA 323
| | || | || ||||| |||||| ||| ||| ||||||||| |||||||||||||||||
Sbjct 196 AGC-TAGGTCTCGACCCGACCCGACCCATAGTTCACTCGAGCGTCTACGAGTCTCTCCGA 254
Query 324 ACCAATGTCCCGAGAGAAAGTATGGGTGT-CAGGGACTTCCCGTTTTTGCCACGTTTCGA 382
|||||| |||| |||||| |||||||| | || ||| || ||||| |||||||| |||
Sbjct 255 ACCAATCTCCCAAGAGAATGTATGGGT-TACAAGGATTTTCCGTTCGTGCCACGTGGCGA 313
Query 383 TGA-CGAGTCAAGAGACGCGAGACGTTATCCAAATCATAGGGAAGTTCTTGCGTATATTC 441
||| | |||||||||| | ||| | ||||| | ||| ||||||||||||||||| |||
Sbjct 314 TGATC-CGTCAAGAGACTCTAGAAGGTATCCGAGTCACAGGGAAGTTCTTGCGTACCTTC 372
Query 442 AAGACTTTGCTAGAGAGTTTAAAATAGAGGAGATGATCCGGTTCGAGACCGAGGTGGTTC 501
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 373 AAGACTTTGCTACAGAGTTTAACATAGAGGAGATGATCCGGTTCGAGACCGAGGTGGTTC 432
Query 502 GCGTTGAACCGGTTGACAACGGGAACTGGAGGGTCCAGTCGAAAAACTCCGGCGGGTTCT 561
| |||||||||||| | | ||| || |||||||||||||| |||| | ||||||| || |
Sbjct 433 GGGTTGAACCGGTT-A-A-CGGTAAATGGAGGGTCCAGTCTAAAACCGCCGGCGGTTT-T 488
Query 562 TG-GAAGATGAGATCTATGACGCCGTCGTGGTTTGCAATGGTCACTATACAGAACCAAAT 620
| ||||||||||||||||||||||| ||||| ||| ||| || | | ||||||||||
Sbjct 489 TCCGAAGATGAGATCTATGACGCCGTTGTGGTGTGCTGTGGACATTTTGCAGAACCAAAC 548
Query 621 ATTGCTCATATTCCTGGTATAAAATCGTGGCCAGGAAAGCAGATTCATAGCCACAACTAT 680
|| ||||| |||||||| || | || ||||| || ||||| | ||| ||||||| |||
Sbjct 549 ATCGCTCAAATTCCTGGAATTGAGTCATGGCCGGGGAAGCAAACTCACAGCCACAGTTAT 608
Query 681 AGAGTTCCTGATCCATTCGAAA-ACGAGGTGGTGGTGGTGATAGGAAATTTTGCGAGTGG 739
||||||||||||||||| ||| | ||||| ||||||||||| || ||||||||||||||
Sbjct 609 CGAGTTCCTGATCCATTC-AAAGATGAGGTAGTGGTGGTGATCGGGAATTTTGCGAGTGG 667
Query 740 TGCCGATATTAGTAGGGACATAGCTAAGGTCGCAAAAGAAGTCCACATTGCGTCTAGAGC 799
|||||||| ||||| |||||| |||| |||||||||||||| || || || ||||||||
Sbjct 668 AGCCGATATCAGTAGAGACATATCTAAAGTCGCAAAAGAAGTTCATATCGCATCTAGAGC 727
Query 800 AAGGGAACCCCACACATACGAGAAGATTTCCGTTCCCCAA-AACAATCTATGGATGCATT 858
||| || || |||||| ||| ||| | |||| || || ||||||||||||||||| |
Sbjct 728 AAGTAAATCCGACACATTCGAAAAGCGTCCCGTACCT-AATAACAATCTATGGATGCACT 786
Query 859 CCGAAATCGACACCACCCATGAGGATGGGT-CGATTGTTTTCAAAAACGGGAAGGTGATA 917
| || || |||||| |||| |||||||| | | |||||||||||||| ||||||||| ||
Sbjct 787 CTGAGATAGACACCGCCCACGAGGATGG-TACCATTGTTTTCAAAAATGGGAAGGTGGTA 845
Query 918 TTTGCTGATAGCATTGTGTATTGCACCGGGTACAAGTATAACTTCCCATTTCTTGAAACA 977
|||||||| |||||| |||| || |||||||||||| |||| ||||||||||||||
Sbjct 846 CATGCTGATACCATTGTCCATTGTACAGGGTACAAGTATTACTTTCCATTTCTTGAAACC 905
Query 978 AATGGCTATTTGCGCATTGATGAAAAACGTGTTGAACCTCTATACAAGCATGTCTTTCCA 1037
|||| ||| || | ||||||| || || ||||||||||| ||||||||| | ||||||
Sbjct 906 AATGATTATATGAGGGTTGATGACAACCGCGTTGAACCTCTCTACAAGCATATTTTTCCA 965
Query 1038 CCAGCGCTTGC-CCCTGGACTTGCTTTCGTTGGTTTGCCAGCAATGGGGATAGTATT-TG 1095
|| |||||||| ||| |||||| ||||| | ||||| ||||||||||| || ||| |
Sbjct 966 CCGGCGCTTGCTCCC-GGACTTTCTTTCATCGGTTTACCAGCAATGGGTCTACAATTCTA 1024
Query 1096 TTATGTTTGAAATCCAAAGCAAATGGGTGGCAGCAGTCTTGTCAGGACGAGTTACACTTC 1155
| ||||||||| |||||||||||||||| | ||||| ||||| ||||||||||||||||
Sbjct 1025 T-ATGTTTGAAGTCCAAAGCAAATGGGTTTCTGCAGTTTTGTCTGGACGAGTTACACTTC 1083
Query 1156 CCTCAACAGAT-AAGATGATGGAAGATATTAA-TGCGTGGTATGCGTCGCTTGATGCCTT 1213
| || ||| || |||||||| ||| |||| | || ||||| | | || || ||
Sbjct 1084 CTTCGGTAGACGAA-ATGATGGACGATCTTAAGTT-GTCGTATGAAACACAAGAAGCATT 1141
Query 1214 AGGTATTCCCAAGAGACATACTCATACGATAGGTAGAAT-TCAGAGTGAGTACCTCAATT 1272
|||||||||||| ||| |||| || | | | |||| ||| |||| ||||||||||| |||
Sbjct 1142 AGGTATTCCCAAAAGATATACACACAAGTTGGGTA-AATCTCAGTGTGAGTACCTCGATT 1200
Query 1273 GGGTCGC-GAAAGAATCTGG-TTGTGA-ACTCGTAGAACGTTGGAGAGGTCAAGAAGTTG 1329
|| |||| || ||| ||| || | | | || |||| |||||||| |||||||||
Sbjct 1201 GGATCGCAGACC-AATGTGGATTCCCACA-T-GTCGAACATTGGAGAGATCAAGAAGTA- 1256
Query 1330 ACG-GCGGATACCTGAGACTTG-TGGCCCATCCAGAAACTTACCGTGATGAATGGGACGA 1387
|| |||| |||| |||||||| | | | |||||||||| ||||||||||||||| ||
Sbjct 1257 ACTCGCGGTTACCAGAGACTTGGTAATCAA-CCAGAAACTTTCCGTGATGAATGGGATGA 1315
Query 1388 CGATGAACTCATAGAAGAAGCGTAC-AATGATTTTTCTAGG-AAGAAGT-TGATTAGTGT 1444
|||||| ||||| ||||||||||| || || || |||| || || | |||| ||| |
Sbjct 1316 CGATGATCTCATGGAAGAAGCGTATGAA-GACTTCGCTAGACAA-AA-TCTGATCAGTTT 1372
Query 1445 TGATCCTTCT 1454
| ||||||||
Sbjct 1373 TCATCCTTCT 1382
> Ahg910977 jgi|Araly1|910977|Al_scaffold_0001_1231
Length=1413
Score = 377 bits (204), Expect = 1e-103
Identities = 848/1148 (74%), Gaps = 87/1148 (8%)
Strand=Plus/Plus
Query 124 ACGTGGCAGTGATCGGAGCCGGACCAGCCGGTCTCATAACGTCTAGGGAGCTCCGTCGTG 183
||||||| ||||||||||||||| | ||||| || | || || | ||||| |||||||
Sbjct 35 ACGTGGCCGTGATCGGAGCCGGAGCTGCCGGGCTTGTGGCGGCTCGAGAGCTTCGTCGTG 94
Query 184 AAGGTCACAGTGT-AGTTGTGTTTGAACGGGAGAAACAAGTCGGTGGTCTATGGGTTTAC 242
|||| |||| || | | ||||| || |||||||||| || || || |||||||||
Sbjct 95 AAGGGCACACCGTCA-CCGCCTTTGAGCGTCAGAAACAAGTAGGAGGACTTTGGGTTTAC 153
Query 243 ACACCTAAAT-CCGATTCC-GATC-CACTTAGCCTTGACCC-CACCCGATCCAAAGTCCA 298
|| || |||| ||| || || | |||| | | | ||||| | ||| ||| |||||
Sbjct 154 ACTCC-AAATGTCGA-GCCAGA-CTCACTGAACATCGACCCGGA-TCGAACCATCGTCCA 209
Query 299 CTCGAGCATCTACGAGTCTCTCCGAACCAATGTCCCGA-GAGAAAGTATGGGTGT-CAGG 356
||||||||||||| | || ||||| ||||| |||| | |||| |||||||| | |||
Sbjct 210 CTCGAGCATCTACCAATCCCTCCGCACCAACCTCCC-ACGAGAGTGTATGGGT-TACAGT 267
Query 357 GACTTCCCGTTTTTG-CCACGTTTCGATGACGAGTCAAGAGACGCGAGACGTTATCCAAA 415
|||||||||||| || || | ||| |||||| | || ||| ||||||| || || |
Sbjct 268 GACTTCCCGTTTGTGACC-CAACCCGACGACGAGACCAGGGACCCGAGACGGTACCCGGA 326
Query 416 TCATAGGGAAGTTCTTG-CGTATATTCAAGACTTTGCTAGAGAGTTT-AAAATAGAGGAG 473
||| ||||||| || || |||| | || ||||| || | ||||||| | | || | |||
Sbjct 327 TCAGAGGGAAG-TCATGAGGTATCTGCAGGACTTCGCCAAAGAGTTTGATATTA-ACGAG 384
Query 474 ATGATCCGGTTCGAGACCGAGGTGGTTCGCGT-T-GA-AC--CGGTTGACAAC-G--G-G 524
|||||||| |||||||| ||||| || |||| | || | ||| || ||| | | |
Sbjct 385 ATGATCCGATTCGAGACAGAGGT--TTTGCGTGTGGAGCCGGCGGCGGAGAACAGTCGTG 442
Query 525 AACTGGAGGGTCCAGTCGAAAAACTCCGGCGGGT-TCT-TGGAAGATGAGATCTAT-GAC 581
|| ||||| || || | | | || | ||| ||| || || || |||| | ||
Sbjct 443 AA-TGGAGAGTTCAATTTAGGAGCT-CAAATGGTGTCTCCGG-CGAAGATATCT-TCGAT 498
Query 582 GCCGTCGTGGTTTGCAATGGTCACTAT-ACAGAACCAAATATTGCTCATATTCCTGGTAT 640
|| ||||| |||||||||||||||| | || || || | |||| |||||||||| | |
Sbjct 499 GCAGTCGTAGTTTGCAATGGTCACT-TCACTGAGCCTCGTCTTGCCCATATTCCTGTTCT 557
Query 641 AAAATCGTGGCCAGGAAAGCAGATTCATAGCCACAACTATAGAGTTCCTGATCCATTCGA 700
|| |||||||||||||| || ||||||||||| ||| | ||||| ||||||||| |
Sbjct 558 CTTGTCATGGCCAGGAAAGCAAATCCATAGCCACAATTATCGTGTTCCAGATCCATTC-A 616
Query 701 AA-A-CGAGGTGGTGGTGGTGATAGGAAA-TTTTGCGAGTGG-TGCCGATATTAGTAGGG 756
|| | | | |||||| | ||||||||||| | | ||||| | |||||||| ||||
Sbjct 617 AAGATC-AAGTGGTGATAGTGATAGGAAACCAAT-CCAGTGGAAG-TGATATTAGCAGGG 673
Query 757 ACATAGCTAA-GGTCGCAAAAGAAGTCCACATTGC-GTCTAGAGCAAGGGAACCCCACAC 814
||||||| || | |||||||||||||| ||||| | ||| | | | | || ||
Sbjct 674 ACATAGC-AACCTTGGCAAAAGAAGTCCATATTGCAG-CTA-A--ATCTG-A-TGCATAC 726
Query 815 -ATACGAGAAGATTTCCGTTCCCCAAAACAATCTATGGATGCATTCCGA-AATCGACAC- 871
| | | ||| | |||| || | | ||||||| || || ||||| || ||| |
Sbjct 727 GAAAAG-GAA-AGTTCCATT---TATAGCAATCTACATATTCA-TCCGACGATTGAC-CG 779
Query 872 CACCCATGAGGATGGGTCGATTGTTTTCAAAAACGGGAAGGTGATATTTGCTGATAG-CA 930
| ||| |||||| ||| |||||||| || ||||||| ||| ||||||| ||| | ||
Sbjct 780 CGTGTATGCGGATGGTTCGGTTGTTTTCCAAGACGGGAAAGTGGTATTTGCGGAT-GCCA 838
Query 931 TTGTGTATTGCACCGGGTACAAGTATAACTTCCCATTTCTTGAAACAAATGGCTATTTG- 989
| || |||||||||| ||||||||| |||||||||||||||||| ||||| ||| ||
Sbjct 839 TAGTACATTGCACCGGCTACAAGTATTGCTTCCCATTTCTTGAAACTAATGGTTATGTGA 898
Query 990 CGCATTGATGAAAAACGTGTTGAACC-TCTATACAAGCATGTCTTTCCACCAGCGCTTGC 1048
| | |||| || || ||||||| ||| | ||||||||||||||||||| |||||||||||
Sbjct 899 C-CGTTGAAGATAACCGTGTTGGACCAT-TATACAAGCATGTCTTTCCGCCAGCGCTTGC 956
Query 1049 CCCTGGACT-TGCTTTCGTTGGTTTGCCAGCAATGGGGATAG-TATT-TGTTATGTTTGA 1105
|||||| || | |||| | ||||| || |||||| | | | ||| | ||||||||||
Sbjct 957 CCCTGGCCTCTCCTTT-ATCGGTTTACCTTCAATGGCG-TTGCAATTCT-TTATGTTTGA 1013
Query 1106 AATCCAAAGCAAATGGGTGGCAGCAGTCTTGTCAGGACGAGTTACA-CTTCCCTCAACAG 1164
|||||||||||||||||| || | || || || || || |||| | ||||| || ||
Sbjct 1014 AATCCAAAGCAAATGGGTCGCTTCGGTTTTATCGGGTCGTGTTA-AGCTTCCGTCGG-AG 1071
Query 1165 -ATAAGATGATGGAAGATATTA-ATGCGTGGTATGCGTCGCTTGA-TGCCTTAGGTATTC 1221
| || |||||||||||||| | | || | ||||| |||| | | | || |||||||
Sbjct 1072 GACAAAATGATGGAAGATATCATA-GCTTTCTATGCAAAGCTTAAAT-CTTTGGGTATTC 1129
Query 1222 CCAAGAGA 1229
||||||||
Sbjct 1130 CCAAGAGA 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59039879750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5