BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62600.1
Length=1532
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475088 jgi|Araly1|475088|fgenesh2_kg.2__218__AT1G62600.1 2161 0.0
Ahg475086 jgi|Araly1|475086|fgenesh2_kg.2__216__AT1G62620.1 1642 0.0
Ahg334507 jgi|Araly1|334507|fgenesh1_pg.C_scaffold_1001072 171 2e-41
> Ahg475088 jgi|Araly1|475088|fgenesh2_kg.2__218__AT1G62600.1
Length=1398
Score = 2161 bits (1170), Expect = 0.0
Identities = 1325/1401 (95%), Gaps = 5/1401 (0%)
Strand=Plus/Plus
Query 32 TCACCATCGTTAACGAATCTCGTaaaaaaaCCCAATGGCGCCTTCCTTATCACCAATCAG 91
||||||||||||||||||||| | |||| |||||||||| ||||||||||||||||||||
Sbjct 1 TCACCATCGTTAACGAATCTCAT-AAAAGACCCAATGGCACCTTCCTTATCACCAATCAG 59
Query 92 ATCACACCACGTGGCAGTTATCGGCGCCGGAGCCGCCGGATTAGTCGCGGCGCGAGAGCT 151
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 60 ATCACACCACGTGGCAGTTATCGGCGCCGGAGCTGCCGGATTAGTCGCGGCGCGAGAGCT 119
Query 152 TCGTCGGGAAGGTCACTCGGTGGTCGTCTTCGAGAGACAAAAACAAGTCGGAGGAACCTG 211
||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 120 TCGACGGGAAGGTCATTCGGTGGTCGTCTTCGAGAGACAAAAGCAAGTCGGAGGAACTTG 179
Query 212 GATTTACACCGATCATATTGAACCCGATCCATTAAGCGTTGACCCGACCCGATCCGTTGT 271
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 GATTTATACCGATCATATCGAACCCGATCCATTAAGCGTTGATCCGACCCGATCCGTTGT 239
Query 272 TCATTCGAGCGTCTATGGATCTCTCCGAACTAATCTCCCCCGTGAGTGTATGGGATACAG 331
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 TCATTCGAGCGTCTATGGCTCTCTCCGAACTAATCTCCCTCGTGAGTGTATGGGATACAG 299
Query 332 GGACTTCCCGTTCGTGATTCGTTCCGATGTATCGGAATCTAGAGATCCGAGGAGGTTTCC 391
|| || |||||| ||| ||||| | |||||||||||||||||||||||||||||||||
Sbjct 300 AGATTTTCCGTTCACGATCCGTTCTGGTGTATCGGAATCTAGAGATCCGAGGAGGTTTCC 359
Query 392 GAGTCATGGTGAAGTTTTGGCGTATTTGCAAGATTTCGCTAAGGAGTTTGCGATTGAGGA 451
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAGTCATAGTGAAGTTTTGGCGTATTTGCAAGATTTCGCTAAGGAGTTTGCGATTGAGGA 419
Query 452 GATGATTCGGTTTGATACGGCGGTTGTGAAGGTTGCTCCGGCGGCGGA-AGAAGGAAGCG 510
||||||||||||||| || ||||||||||||||||||||||||||||| | |||||| ||
Sbjct 420 GATGATTCGGTTTGAGACTGCGGTTGTGAAGGTTGCTCCGGCGGCGGACA-AAGGAATCG 478
Query 511 GGAAATGGAGAATTGAATCTACGGAGAAAGAGAAGAAAGTTCTTCGTGATGAGATTTATG 570
||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 479 GGAAATGGAGAATTGAATCTATGGAGAAAGAGAAGAGAGTTCGTCGTGATGAGATTTATG 538
Query 571 ATGCTGTTGTTGTTTGTAATGGACATTACATTGAACCTCGTCACGCTGAAATTCCTGGTA 630
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
Sbjct 539 ATGCTGTTGTTGTTTGTAATGGACATTATATTGAACCTCGTCTCGCTGAAATTCCTGGGA 598
Query 631 TAAGTTCTTGGCCAGGGAAGGAGATGCATAGTCATAATTATCGTATACCTGAACCGTTTA 690
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 599 TAAGTTCTTGGCCAGGGAAGGAGATGCATAGTCATAATTATCGTATACCGGAACCGTTTA 658
Query 691 GAGATCAGGTTGTTGTGCTTATAGGGAACTCTGCAAGTGCTGATGATATAAGTAGGGATA 750
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 659 GAGATCAGGTTGTTGTGCTTATAGGGAACTCTGCTAGTGCTGATGATATAAGTAGGGATA 718
Query 751 TTGCTAGAGTTGCCAAAGAGGTTCATGTGGCTTGTAGGTCCAATGCTGCTGATACGTATA 810
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||
Sbjct 719 TTGCTAGAGTTGCCAAAGAGGTTCATGTGGCTTGTAGGTCAAATGATGCTGATACGTTTA 778
Query 811 TTGAGCGGCCTGGTTACAGTAATCTATGGATGCATTCGATGATTGAGAGTGTCCATGAGG 870
| |||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 779 TCGAGCGGCCCGGTTACAGTAATCTATGGATGCATTCAATGATTGAGCGTGTCCATGAGG 838
Query 871 ATGGTTCTGTAGTTTTTCAGAATGGGAAAACGATTTCGGTTGATGTTATTATGCATTGCA 930
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 839 ATGGTTCTGTGGTTTTTCAGAACGGGAAAACGATTTCGGTTGATGTAATTATGCATTGCA 898
Query 931 CTGGGTATAAGTATCACTTCCCGTTTCTTGAAACCAATGGAAATGTTACTGTAGACGATA 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 899 CTGGGTATAAGTATCACTTCCCGTTTCTTGAAACCAATGGAAATGTTACTGTAGATGATA 958
Query 991 ACCGTGTCGGGCCATTGTACAAAGACGTATTCTCTCCAGCCTTTGCGCCGTGGCTCTCCT 1050
|||||||||||||||||||||||||||| ||| ||||||||||||| || ||||||||||
Sbjct 959 ACCGTGTCGGGCCATTGTACAAAGACGTCTTCCCTCCAGCCTTTGCACCATGGCTCTCCT 1018
Query 1051 TCGTTGGGATACCATGGAAGGTTGTACCTTTTCCTATGTTTGAACTGCAAAGCAAGTGGA 1110
|| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1019 TCATTGGGATACCATGGAAGGTTGTACCTTTTCCTATGTTTGAGCTGCAGAGCAAGTGGA 1078
Query 1111 TCGCTGGTGTTTTGTCGGGTCGGATACCGCTGCCTTCAAAGGAAGATATGATGATGGAAA 1170
| || ||||||||||| |||||||| || ||||||||||||||||||||||| |||||||
Sbjct 1079 TTGCGGGTGTTTTGTCAGGTCGGATCCCACTGCCTTCAAAGGAAGATATGATAATGGAAA 1138
Query 1171 TCAAAACCTTATACTCAACACTTGATGCCCAAGGGATTGCAAAGCGATATACTCACCAAA 1230
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1139 TCAAAACCTTATACGCAACACTTGAAGCCCAAGGGATTGCAAAGCGATATACTCACCAAA 1198
Query 1231 TGGGCATTTCTCAATTTGAGTACAATAGTTGGTTGGCTTCACAATGCGGTTGCTCAGAAA 1290
|||||||| |||||||||||||||||| |||||||||||||||||| || ||||||||||
Sbjct 1199 TGGGCATTACTCAATTTGAGTACAATAATTGGTTGGCTTCACAATGTGGATGCTCAGAAA 1258
Query 1291 CAGAGGAATGGAGGAAAGAGATGTATTTTG-CAACGGGCGTGAAGAAGAGAGCCCATCCA 1349
|||||||||||||||||||||||||||| | | || || |||| ||||||| ||||||||
Sbjct 1259 CAGAGGAATGGAGGAAAGAGATGTATTT-GACGACTGGTGTGAGGAAGAGAACCCATCCA 1317
Query 1350 GAGACGTATAGAGACGAATGGGATGATCATCACTTAGTTTCTCAAGCTTATCAAGATTTC 1409
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GAAACATATAGAGACGAATGGGATGATCATCACTTAGTTTCTCAAGCTTATCAAGATTTC 1377
Query 1410 TCTTTGTACACATAAACaaaa 1430
||||||||| |||||||||||
Sbjct 1378 TCTTTGTACGCATAAACAAAA 1398
> Ahg475086 jgi|Araly1|475086|fgenesh2_kg.2__216__AT1G62620.1
Length=1406
Score = 1642 bits (889), Expect = 0.0
Identities = 1220/1379 (88%), Gaps = 26/1379 (2%)
Strand=Plus/Plus
Query 65 AATGGCGCCTTCCTTATCACCAATCAGATCACACCACGTGGCAGTTATCGGCGCCGGAGC 124
||||| ||| | |||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 2 AATGGAACCTGCATTATCACCAATCAGATCACACCACGTGGCAGTTATCGGTGCTGGACC 61
Query 125 CGCCGGAT-TAGTCGCGGCGCGAGAGCTTCGTCGGGAAGGTCACTCGGTGGTCGTCTTCG 183
|||||| | |||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 62 CGCCGG-TCTAGTGGCGGCGCGAGAGCTTCGACGGGAAGGTCACTCGGTGGTCGTTTTCG 120
Query 184 AG-AGACAAAAACAAGTCGGAGGAACCTGGATTTACACCGATCATA-TTGAACCCGATCC 241
|| || ||||||||||| |||||||||||||| ||||||||| | | | ||| | |||||
Sbjct 121 AGAAG-CAAAAACAAGTTGGAGGAACCTGGATCTACACCGATGA-AGTCGAATCGGATCC 178
Query 242 ATTAAGCGTTGACCCGACCCGATCCGTTGTTCATTCGAGCGTCTATGGATCTCTCCGAAC 301
||||| ||||||||||||||||||||||| ||||| ||||||||| | ||||||||||
Sbjct 179 GTTAAGTGTTGACCCGACCCGATCCGTTGTCCATTCAAGCGTCTATAGCTCTCTCCGAA- 237
Query 302 T-AATC--TCCCCCGTGAGTGTATGGGATACAGGGACTTCCCGTTCGTGATTCGTTCCGA 358
| || | | |||| ||||||| |||||||| |||| |||||||||| |||||||||
Sbjct 238 TCAA-CGGT-ACCCGAGAGTGTACCGGATACAGAGACTACCCGTTCGTGGTTCGTTCCGG 295
Query 359 TGTATCGGAATCTAGAGATCCGAGGAGGTTTCCGAGTCATGGTGAAGTTTTGGCGTATTT 418
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 296 TGTATCGGAATCTAGAGATCGGAGGAGGTTTCCGAGTCACGGTGAAGTTTTGGCGTATTT 355
Query 419 GCAAGATTTCGCTAAG-GAGTTTGCGATTGAGGAGATGATTCGGTTTGATACGGCGGTTG 477
|||||||||||| ||| ||||||| ||||||||||||| || ||||||| |||| |||||
Sbjct 356 GCAAGATTTCGC-AAGAGAGTTTGGGATTGAGGAGATGGTTAGGTTTGAGACGGAGGTTG 414
Query 478 TGAAGGTTGCTCCGGCGGCGGAAGAAGGAAGCGGGAAATGGAGAATTGAATCTACGGAGA 537
|||||||| ||||||||||||||| || || ||||||||||||| ||||||| |||||||
Sbjct 415 TGAAGGTTCCTCCGGCGGCGGAAGGAGAAATCGGGAAATGGAGAGTTGAATCAACGGAGA 474
Query 538 AAGAGAAGAAAGTTCTTCGTGATGAGATTTATGATGCTGTTGTTGTTTGTAATGGACATT 597
| ||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 475 AGGAGAAGAGAGTTCGTCGGGATGAGATTTATGATGCTGTTGTTGTTTGTAATGGACATT 534
Query 598 ACATTGAACCTCGTCACGCTGAAATTCCTGGTATAAGTTCTTGGCCAGGGAAGGAGATGC 657
| |||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 535 ATGTTGAACCTCGTCTCGCTCAAATTCCTGGTATAAGTTCTTGGCCAGGGAAAGAGATGC 594
Query 658 ATAGTCATAATTATCGTATACCTGAACCGTTTAGAGATCAGGTTGTTGTGCTTATAGGGA 717
|||| |||||||| ||||| || |||||||| | ||||||||||||||||||||| || |
Sbjct 595 ATAGCCATAATTACCGTATTCCGGAACCGTTCAAAGATCAGGTTGTTGTGCTTATTGGAA 654
Query 718 ACTCTGCAAGTGCTGATGATATAAGTAGGGATATTGCTAGAGTTGCCAAAGAGGTTCATG 777
||||| |||| ||||| |||||||||||||| ||||||| | ||||||||||||||||||
Sbjct 655 ACTCTTCAAGCGCTGAGGATATAAGTAGGGACATTGCTACATTTGCCAAAGAGGTTCATG 714
Query 778 TGGCTTGTAGGTCCAATGCTGCTGATACGTATATTGAGCGG-CCTGGTTACAGTAATCTA 836
||||||||||||| ||| | |||||||||| ||| | | | || |||||||||||||||
Sbjct 715 TGGCTTGTAGGTCAAATCCAGCTGATACGTTTATCAAACAGACC-GGTTACAGTAATCTA 773
Query 837 TGGATGCATTCGAT-GATTGAGAGTGTCCATGAGGATGGTTCTGTAGTTTTTCAGAATGG 895
|||| |||||| || ||||||| ||||||||||||||||||| || ||||||||||| ||
Sbjct 774 TGGACGCATTC-ATCGATTGAGTGTGTCCATGAGGATGGTTCGGTGGTTTTTCAGAACGG 832
Query 896 GAAAACGATTTCGGTTGATGTTATTATGCATTGCACTGGGTATAAGTATCACTTCCCGTT 955
||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 833 GAAGACGATTTCGGTTGATATTATTATGCATTGCACTGGGTATAAGTATCACTTTCCGTT 892
Query 956 TCTTGAAACCAATGGAAATGTTACTGTAGACGATAACCGTGTCGGGCCATTGTACAAAGA 1015
|||||| || ||||||| ||| | |||||| |||||||||||||| ||||||||||||||
Sbjct 893 TCTTGATACGAATGGAATTGTCAGTGTAGATGATAACCGTGTCGGACCATTGTACAAAGA 952
Query 1016 CGTATTCTCTCCAGCCTTTGCGCCGTGGCTCTCCTTCGTTGGGATACCATGGAAGGTTGT 1075
||| ||| ||||||| ||||| || ||||| || ||| | |||||||||||| |||| ||
Sbjct 953 CGTCTTCCCTCCAGCATTTGCACCTTGGCTTTCTTTCATCGGGATACCATGGCAGGT-GT 1011
Query 1076 -ACCTTTTCCTATGTTTGAACTGCAAAGCAAGTGGATCGCTGGTGTTTTGTCGGGTCGGA 1134
|||||| ||||||||||| ||||| ||||||||||| || |||||||||||||||||||
Sbjct 1012 TACCTTTCCCTATGTTTGAGCTGCAGAGCAAGTGGATTGCGGGTGTTTTGTCGGGTCGGA 1071
Query 1135 TACCGCTGCCTTCAAAGGAAGATATGATGATGGAAATCAAAACCTTATACTCAACACTTG 1194
||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 1072 TACCGCTGCCTTCCAAGGAAGATATGATAATGGAAATCAAAACCTTTTACTCCACACTTG 1131
Query 1195 A-TGCCCAAGGGATTGCAAAGCGATATACTCACCAAATGGGCATTTCTCAATTTGAGTAC 1253
| | || |||||||| |||||||||||||||| | ||||||| | |||| |||||||||
Sbjct 1132 AATTCC-AAGGGATTCCAAAGCGATATACTCATCGTATGGGCAATACTCAGTTTGAGTAC 1190
Query 1254 AATAGTTGGTTGGCTTCACAATGCGGTTGCTCAGAAACAGAGGAATGGAGGAAAGAGATG 1313
||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1191 GATAATTGGTTGGCTTCGCAATGCGGGTGCTCAGAAACAGAGGAATGGAGGAAAGAGATG 1250
Query 1314 TATTTTGC-AACGGGCGTGAAGAAGAGA-GCCCATCCAGAGACGTATAGAGACGAATGGG 1371
| ||| || || | |||| |||| || ||||||||||||||||| |||||||||||||
Sbjct 1251 TGTTTGGCGAATGTT-GTGAGGAAG-GAAGCCCATCCAGAGACGTACAGAGACGAATGGG 1308
Query 1372 ATGATCATCACTTAGTTTCTCAAGCTTATCAAGATTTCTCTTTGTACACATAAACaaaa 1430
| |||||||||||| |||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1309 AAGATCATCACTTAATTTCTCAAGCTTATCAAGATTTCTCTACGTAGTCATAAACAAAA 1367
> Ahg334507 jgi|Araly1|334507|fgenesh1_pg.C_scaffold_1001072
Length=1380
Score = 171 bits (92), Expect = 2e-41
Identities = 430/591 (73%), Gaps = 32/591 (5%)
Strand=Plus/Plus
Query 558 GATGAGAT-TTATGATGCTGTTGTTGTTTGTAATGGACATTACATTGAACCTCGTCACGC 616
|||||||| || |||||||||||||||||||||||||||||| | |||||| | ||
Sbjct 478 GATGAGATCTT-TGATGCTGTTGTTGTTTGTAATGGACATTATACAGAACCTAGAGTTGC 536
Query 617 TGAAATTCCTGGTATA-AGTTCTTGGCCAGGGAAGGAGATGCATAGTCATAATTATCGTA 675
| | ||||||||||| | ||| |||||||||||| |||| ||||| || ||||| |||
Sbjct 537 TCATGTTCCTGGTATAGA-TTCATGGCCAGGGAAGCAGATTCATAGCCACAATTACCGTG 595
Query 676 TACCTGAACCGTTTAGAGATCAGGTTGTTGT-GCTTATAGGGAACTCTGCAAGTGCTGAT 734
| ||||| | || | ||| ||||| || || | | ||||| || | ||| |||| | |
Sbjct 596 TTCCTGATCAATTCAAAGACCAGGTGGTGGTAG-TGATAGGAAATTTTGCGAGTGGAGCT 654
Query 735 GATATAAGTAGGGATATTGCTAGAGTTGCCAAAGAGGTTCATGTGGCTTGTAGGTCCAAT 794
|||||||| ||||| || | |||| || ||||| || ||| | || | ||| || |||
Sbjct 655 GATATAAGCAGGGACATAACGGGAGTGGCGAAAGAAGTCCATATTGCGTCTAGATCGAAT 714
Query 795 GC-TGCTGATACGTA-T-ATTGAGCGGCCTGGTTACAGTAATCTATGGATGCATTCGATG 851
| | || | || || | | | | || || | ||||||||||||| | || || |||
Sbjct 715 CCAT-CTAAGACATACTCAAA-A-CTTCCCGGGTCCAGTAATCTATGGCTTCACTCTATG 771
Query 852 ATTGAGAGTGTCCATGAGGATGGTTCTG-TAGTTTTTCAGAATGGGAAAACGATT-T-CG 908
|| || || || || || ||||| || | | ||||||||||| || || | || | |
Sbjct 772 ATAGAAAGCGTACACGAAGATGGGTC-GATTGTTTTTCAGAACGGTAAG--G-TTGTACA 827
Query 909 -GTTGATGTTATTATGCATTGCACTGGGTATAAGTATCACTTCCCGTTTCTTGAA-ACCA 966
| |||| ||| ||||||||||||| || || || |||||||| ||||| || || |
Sbjct 828 AGCTGATACCATTGTGCATTGCACTGGTTACAAATACCACTTCCCATTTCTC-AACACAA 886
Query 967 ATGGAAATGTTACTGTAGACGATAACCGTGTCGGGCCA-TTGTACAAAGACGTATTCTCT 1025
|||| || ||||||| || |||||| |||| || || || |||||| |||| || ||
Sbjct 887 ATGGTTATATTACTGTCGAGGATAACTGTGTTGGACCGCTT-TACAAACACGTGTT-TCC 944
Query 1026 -CCAGC-CTTTGCGCCGTGGC-TCTCCTTCGTTGGGATACCATGGAAGGTTGTACCTTTT 1082
|| || ||| || || ||| | |||||| | || |||| |||| | | | ||
Sbjct 945 GCCTGCGCTT-GCTCCC-GGCCTTTCCTTCATCGGTTTACCCTGGATGACACTGCAATT- 1001
Query 1083 CCT-ATGTTTGAACTGCAAAGCAAGTGGATCGCTGGTGTTTTGTCGGGTCG 1132
| | |||||||| || ||||| |||||| | |||| | |||||| |||||
Sbjct 1002 CTTTATGTTTGAGCTCCAAAGTAAGTGGGTGGCTGCAGCTTTGTCCGGTCG 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57363908970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5