BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G62780.1 Length=957 Score E Sequences producing significant alignments: (Bits) Value Ahg475075 jgi|Araly1|475075|fgenesh2_kg.2__205__AT1G62780.1 1387 0.0 > Ahg475075 jgi|Araly1|475075|fgenesh2_kg.2__205__AT1G62780.1 Length=901 Score = 1387 bits (751), Expect = 0.0 Identities = 858/909 (94%), Gaps = 10/909 (1%) Strand=Plus/Plus Query 1 AAAAAAGCAGAGCTCACACTTAGaaaacaaaaaacaaaaaTGGCTACGCTTTCGTTTGGA 60 ||||||||||||||||||||||| ||| |||||| |||||||||||||||||| ||| Sbjct 1 AAAAAAGCAGAGCTCACACTTAG-AAA-AAAAAATTCTAATGGCTACGCTTTCGTTCGGA 58 Query 61 ATCGCCGCCGCTGCAACCACCGTCCGTACGATTCCGAGATTTAATTCACGGAGGAGCAAA 120 ||||||| | | ||||||||||||||||| || |||| ||||||| |||||||||||||| Sbjct 59 ATCGCCG-C-C-GCAACCACCGTCCGTACAATACCGAAATTTAATACACGGAGGAGCAAA 115 Query 121 ATCACATGCGAATGGGATCCGAAAGGTGTGTTGGGTCCGGCTCAAACTGGTCATATAGCT 180 ||| | |||||||||||||||||||||||||| |||||| | |||||||||||||| ||| Sbjct 116 ATCTCCTGCGAATGGGATCCGAAAGGTGTGTTAGGTCCGCCGCAAACTGGTCATATCGCT 175 Query 181 CGGCTTGAGTTTAAGCGTCGGCTAGAGAGAGATTCAGAGGCAAGAGAAGCTTTTCAGAAA 240 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 176 AGGCTTGAGTTTAAACGTCGGCTAGAGAGAGATTCAGAGGCAAGAGAAGCTTTTCAGAAA 235 Query 241 CAACTTCGTGAAGAGAAAGAGCGTCGTCAAGCTCTTAGACAATCTAGAGTTGTACCGGAT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 236 CAACTTCGTGAAGAGAAAGAGCGTCGTCAAGCTCTTAGACAATCTAGAGTTGTACCGGAT 295 Query 301 ACTGCTGCGGAGCTGATTGAGTACTTTCTTGATACTGAAGCTCAGGAGATTGAGTATGAG 360 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 296 ACTGCGGCGGAGCTGATTGAGTACTTTCTTGATACTGAAGCTCAGGAGATTGAGTACGAG 355 Query 361 ATCGCTAGGCTTAGAGGAAGGTTAAACGACGAATTCTTTGCGCAGATACGACTTGAAATC 420 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 ATCGCTAGGCTTCGAGGAAGGTTAAACGACGAATTCTTTGCGCAGATACGACTTGAAATC 415 Query 421 GGACAGATTCGATTTGCTGTTACTAAGACTGCGGATATTGAAGATAGATTGATTGAGCTT 480 || |||||||| ||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 416 GGGCAGATTCGGTTTGCTGTTACTAAGACTGCGGAAAGTGAAGATAGATTGATTGAGCTT 475 Query 481 GAAACACTTCAAAAAGCTTTAGAAGAAGGAATAGAGGCTTATGACAAAATGCAAAATGAG 540 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 476 GAAACACTTCAAAAAGCTTTAGAAGAGGGAATAGAGGCTTATGACAAAATGCAAAATGAG 535 Query 541 CTTATGACGGCTACAAATAGCTTAACCAA-ACTCTTAACCTCAACCGATATAAAAACCAC 599 ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 536 CTTATGACGGCTACAAATAGCTTAACCAAGA-TCTTAACCTCAACCGATATAAAAACCAC 594 Query 600 ATTGTTGGATATGGTGGAGAAAAACCAAATCAACAGATCTTTGTTGGCACTTCTCGACGA 659 ||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 595 ATTATTGGATATGGTGGAGAAAAACGAAATCAACCGATCTTTGTTGGCACTTCTCGACGA 654 Query 660 AAACATAGCCAATGCATACAAAGGAAACCAGAAAGAAGCAGGAGATTACATGGAGAAGAT 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 655 AAACATAGCCAATGCATACAAAGGAAACCAGAAAGAAGCAGGAGATTACATGGAGAAGAT 714 Query 720 ACGCTCTTCAGTTCTTAAGTATTTGACAGTGTAGGATCATATGAGTCTTCGAAAGATTTC 779 ||| ||||| ||||| ||||| ||||||||||||||||||| |||||||||||||||||| Sbjct 715 ACGTTCTTCGGTTCTAAAGTACTTGACAGTGTAGGATCATACGAGTCTTCGAAAGATTTC 774 Query 780 TCAAGCTTTTGAATGTTTTCTATTATCGGGGAAAATTGTatttatatttttgttt-gttg 838 |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||| Sbjct 775 TCAAGCTTTTGAATGTTTTCTATTATCGGGTAAAAATGTATTTATATTTTTGTTTTGTTG 834 Query 839 agtaaaatgtattttctttttttccgaacgatgtttatatttttAGGGTCATTTCAGATC 898 |||||||||||||| |||| || |||||||||| |||||| |||| |||| ||||||||| Sbjct 835 AGTAAAATGTATTT-CTTTCTT-CCGAACGATGATTATATCTTTAAGGTCGTTTCAGATC 892 Query 899 TTCAAGTAA 907 | ||||||| Sbjct 893 TCCAAGTAA 901 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35530558644 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5