BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G62960.1 Length=1845 Score E Sequences producing significant alignments: (Bits) Value Ahg924694 jgi|Araly1|924694|scaffold_200255.1 2900 0.0 > Ahg924694 jgi|Araly1|924694|scaffold_200255.1 Length=1725 Score = 2900 bits (1570), Expect = 0.0 Identities = 1673/1724 (97%), Gaps = 2/1724 (0%) Strand=Plus/Plus Query 58 TTATTTACCTAAAAACATGAGTTCACTACAATGACCCGTACCGAACCAAACCGGAGCCGG 117 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2 TTATTAACCTAAAAACATGAGTTCACTACAATGACCCGTACCGAACCAAACCGGAGCCGG 61 Query 118 AGCTCCAATTCCGATTCCGATAAGAATTCCGGTAACGTCGGCGGAGGTAGAACCACCGGG 177 ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 62 AGCTCCAATTCAGATTCCGATAAGAATTCCGGTAACGGCGGCGGAGGTAGAACCACCGCG 121 Query 178 ATGAGGGTTATTGTTCCGTTACAAGGTGTGGTACAAGGTCGTGGTGGTTTATTCTTAGGC 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 122 ATGAGGGTTATTGTTCCGTTACAAGGTGTGGTACAAGGTCGTGGTGGTTTATTCTTGGGC 181 Query 238 TCTGTGATTCCTTGTGCTTTCTTCTACTTTCTTCAGTTTTACCTAAAACGAAATCGTAAA 297 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 182 TCTGTTATTCCTTGTGCTTTCTTCTACTTTCTCCAGTTTTACCTAAAACGAAATCGGAAA 241 Query 298 AACGACGAATCAGATAATTCCGGTGAACAAAACTCCTCAGcttcttcttcttcttctCCT 357 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 242 AACGACGAATCCGATAATTCCGGTGAACAAAACTCCTCAGCTTCTTCTTCTTCTTCTCCA 301 Query 358 AATTCGGGTTTACCGGATCCCACCCGGTCACAATCCGCTGGTCATCTCACGGAGCTTACT 417 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 302 AATTCGGGTTTACCGGATCCGACCCGGTCACAATCCGCTGGTCATCTCACGGAGCTTACT 361 Query 418 GGTTTACCTCGTTCTCTCTCTCGTATTCTCCTCTCGCCGAGAAATTCCGGTGGAGCTGTT 477 ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| Sbjct 362 GGTTTACCTCGTTCTCTTTCTCGGATTCTTCTCTCGCCGAGAAATTCCGGTGGAGCTGTT 421 Query 478 TCGGTTTCGGGTCGGGTTAATTGTGTACTCAAAGGTGGAGATTCTTCGCCTTACTACGTT 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 422 TCGGTTTCGGGTCGGGTTAATTGTGTACTCAAAGGTGGAGATTCTTCGCCTTACTACGTT 481 Query 538 GGTCAAAAACGGGTCGAGGATGATCCGTATGATGAGTTGGGTAACCCGGACGGAGTTATC 597 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 482 GGTCAAAAACGGGTCGAGGAAGATCCGTATGATGAGTTGGGTAACCCGGACGGAGTTATC 541 Query 598 CAACTTGGTTTAGCTCAAAACAACAAGTTGAGTTTGGATGATTGGGTTTTAGAGAATCCA 657 |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 542 CAACTTGGTTTAGCTCAAAACACCAAGTTGAGTTTGGATGATTGGGTTTTGGAGAATCCA 601 Query 658 AAAGAAGCAATTTCAGATGGATTGAGTATTAGTGGCATTGCTTCTTATGAGCCTTCTGAT 717 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 602 AAAGAAGCAATTTCAGATGGATTGAGTATTAGTGGCATTGCTTCTTATGAGCCTTCTGAT 661 Query 718 GGACTTTTGGAACTGAAAATGGCTGTGGCAGGATTTATGACTGAAGCTACCAAAAACTCG 777 ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| Sbjct 662 GGACTTTTGGAACTGAAAATGGCTGTGGCAGGATTTATGTCTGAAGCAACCAAAAATTCG 721 Query 778 GTGACTTTTGATCCATCACAGTTAGTGTTAACTTCTGGTGCATCATCTGCTATTGAGATT 837 ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 722 GTGTCTTTCGATCCATCACAGTTAGTGTTAACTTCTGGTGCATCATCTGCTATTGAGATT 781 Query 838 CTTTCCTTCTGCTTAGCTGATTCGGGAAACGCCTTCCTTGTTCCAACTCCGTGTTCTCCC 897 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 782 CTTTCCTTCTGCTTAGCTGATTCGGGAAACGCCTTCCTTGTTCCAACTCCGTGTTCCCCC 841 Query 898 GGATATGATAGGGATGTTAAATGGCGAACAGGAGTTGACATTATACACGTTCCATGTAGA 957 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 842 GGATATGATAGGGATGTTAAATGGCGAACAGGAGTTGACATTATACACGTTCCTTGTAGA 901 Query 958 AGTGCGGATAATTTCAATATGTCGATGGTCGTGCTTGATCGAGCATTCTATCAAGCTAAG 1017 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 902 AGTGCGGATAATTTCAATATGTCGATGGTCGTGCTTGATCGAGCATTCTATCAAGCCAAG 961 Query 1018 AAACGAGGTGTAAGAATCCGCGGCATTATAATCTCGAATCCTTCAAATCCCATGGGAAGC 1077 ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 962 AAACGAGGTGTCAGAATCCGTGGCATTATAATCTCGAATCCTTCGAATCCCATGGGAAGC 1021 Query 1078 CTACTGAGCAGAGAGAATCTCTATGCGCTTTTGGACTTTGCCCGTGAGAGGAACATTCAT 1137 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1022 CTACTGAGCAGAGAGAATCTCTATGCGCTTTTGGACTTTGCCCGTGAGAGGAACATTCAT 1081 Query 1138 ATTATATCAAACGAAATCTTTGCTGGGTCAGTCCACGGAGAAGAAGGAGAGTTTGTTAGC 1197 || || |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1082 ATAATCTCAAACGAAATCTTCGCTGGGTCAGTCCACGGAGAAGAAGGAGAGTTTGTTAGC 1141 Query 1198 ATGGCTGAAATAGTTGACACGGAAGAGAATATCGACAGGGAAAGAGTTCATATCGTGTAT 1257 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1142 ATGGCTGAAATAGTTGACACGGAAGAGAATATCGACAGAGAAAGAGTTCATATCGTGTAT 1201 Query 1258 GACCTTTCGAAAGACTTGTCTTTCCGGGGGCTTAGATCCGCTGCTATCTACTCGTTCAAC 1317 ||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct 1202 GACCTCTCGAAAGACTTGTCTTTCCCGGGACTTAGATCCGCTGCTATCTACTCGTTCAAC 1261 Query 1318 GAGAGTGTTTTATCCGCTTCAAGAAAGCTCACGACGCTCTCACCTGTCTCATCTCCAACC 1377 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1262 GAAAGTGTTTTATCCGCTTCAAGAAAGCTCACGACGCTCTCACCTGTCTCATCGCCAACC 1321 Query 1378 CAACATTTGCTGATATCCGCAATCTCCAATCCAAAAAATGTTCAGAGATTTGTGAAAACC 1437 ||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||| Sbjct 1322 CAACATTTGCTGATATCGGCAATCTCCAATCCAAAGAATGTTCAGAGACTTGTGAAAACC 1381 Query 1438 AACAGGCAGAGATTGCAGAGTATCTACACGGAGCTCGTGGAGGGGTTGAAAGAGTTAGGG 1497 ||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||| Sbjct 1382 AACAGGCAGAGATTGCAGAGTATATACACGGAACTCGTGAAGGGGTTGAAAGAGTTAGGG 1441 Query 1498 ATCGAGTGCACAAGAAGCAATGGAGGGTTCTACTGTTGGGCTGATATGCGAGGATTGATT 1557 ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1442 ATCGAGTGCACAAAAAGCAATGGAGGGTTCTACTGTTGGGCCGATATGCGAGGATTGATT 1501 Query 1558 TCATCTTACAGCGAAAAAGGCGAGATTGAGCTGTGGAACAAGCTCTTGAACATTGGCAAG 1617 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1502 TCATCTTACAGCGAAAAAGGCGAGATCGAGCTGTGGAACAAGCTCTTGAACATTGGCAAG 1561 Query 1618 ATCAATGTCATACCAGGATCTTGTTGTCACTGTATCGAACCAGGATGGTTCCGTATCTGT 1677 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1562 ATCAATGTCATACCAGGATCTTGTTGTCACTGTATCGAACCAGGATGGTTCCGTATCTGT 1621 Query 1678 TTCAGTAATTTGTCTGAGAGAGATGTGCCAGTAGTTATGAACCGCATTAGAAAAGTTTGT 1737 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1622 TTCAGTAATTTGTCTGAGAGAGATGTGCCTGTAGTTATGAACCGCATTAGAAAAGTTTGT 1681 Query 1738 GAAACATGTAAATCTCAAAATTGATTA--CAATTTGATTATTTG 1779 ||||||||||||||||||||||||| ||||||||||||||| Sbjct 1682 CAAACATGTAAATCTCAAAATTGATTCTGCAATTTGATTATTTG 1725 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69286155655 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5