BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63040.1
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907129 jgi|Araly1|907129|Al_scaffold_0002_210 928 0.0
Ahg887529 jgi|Araly1|887529|Al_scaffold_0240_1 832 0.0
> Ahg907129 jgi|Araly1|907129|Al_scaffold_0002_210
Length=747
Score = 928 bits (502), Expect = 0.0
Identities = 602/649 (93%), Gaps = 11/649 (2%)
Strand=Plus/Plus
Query 100 AGCCTCTCTGACTCTGCCACGTGTGAAAACCCTTGTCCACTTGAtactatcactactact 159
|||||||||||||||| ||||||||||||||||| |||||||||||| | | | | |||
Sbjct 109 AGCCTCTCTGACTCTGTCACGTGTGAAAACCCTTATCCACTTGATAC--T-A-T-C-ACT 162
Query 160 actactactGTTTGTTTTGCGGCTCCTTCTTCTACTGCAAGTGGTAATGATATTAATACT 219
| ||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 163 -C--CTACTGTTTCTTTTGCGGCTCCTACTTCTACTACAAGTGGTAATGATATTAATACT 219
Query 220 TTAATGGCCACTGACACCGACATCTCTCGCCGGAAAAAGAATCCGGTTTATCGGGGAATT 279
||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 220 TTAATGGCCACTGACGCCGACATCTCTCGCCGGAAAAAGCGTCCGGTTTACCGGGGAATT 279
Query 280 CGTTGTCGGAGTGGAAAATGGGTGTCTGAAATCCGAGAGCCTAAAAAGACTACACGTGTC 339
||||| ||||||||||||||||| || || |||||||||||||| ||||||||||||||
Sbjct 280 CGTTGCCGGAGTGGAAAATGGGTCTCCGAGATCCGAGAGCCTAAGAAGACTACACGTGTT 339
Query 340 TGGCTTGGGACTTATCCGACGCCGGAGATGGCTGCTGCCGCATATGACGTGGCGGCGTTA 399
|||||||| |||||| ||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 340 TGGCTTGGAACTTATACGACGCCGGAGATGGCTGCGGCCGCCTATGACGTGGCGGCTTTA 399
Query 400 GCTCTTAAAGGTGGAGACACTC-TCTTGAACTTCCCGGATTCCCTGGGATCTTACCCCAT 458
|||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||
Sbjct 400 GCTCTTAAAGGTGGAGACAC-CGTCTTGAACTTCCCGGATTCCGTGGGATCTTACCCCAG 458
Query 459 TCCCCTTTCCTCTTCCGCAGCTCATATCAGATGCGCTGCAGCTGCGGCTGCTGCGACTAG 518
|||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||
Sbjct 459 TCCCCTTTCCTCTTCCGCAGCTCATATCAGATGCGCTGCAGCCGCAGCTGCTGCGGCTAG 518
Query 519 GGGTGCGGCTGGAGCGGCCGTGAAGGTAGGTCAAAAGAAGGAAGATAAAGTTTATGATAC 578
||||||||||| |||||||||||||| |||| ||||||||||||| |||||| ||||||
Sbjct 519 GGGTGCGGCTGCAGCGGCCGTGAAGGGAGGTGAAAAGAAGGAAGAGGAAGTTTGTGATAC 578
Query 579 GGCGGAATCTTCAACTATGGGGTTTGTGGATGAAGAAGAGCTATTGAACATGCCTGGTTT 638
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 GGCGGGATCTTCAACTATGGGGTTTGTGGATGAAGAAGAGCTATTGAACATGCCTGGTTT 638
Query 639 GCTAGCGGATATGGCCAAAGGGATGATGGTGGCTCCACCGTGGATGGGATCTCCACCGTC 698
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 639 GCTAGCGGATATGGCCAAAGGGATGATGGTGGCTCCTCCGTGGATGGGATCTCCTCCGTC 698
Query 699 AGATGATTCGCCAGAGAATTCTGATGGAGAGAGCTTGTGGAGCTATTGA 747
|||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 699 AGATGATTCGCCGGAAAATTCTGATGGAGAGAGCTTGTGGAGCTATTGA 747
> Ahg887529 jgi|Araly1|887529|Al_scaffold_0240_1
Length=609
Score = 832 bits (450), Expect = 0.0
Identities = 525/562 (93%), Gaps = 2/562 (0%)
Strand=Plus/Plus
Query 187 TCTTCTACTGCAAGTGGTAATGATATTAATACTTTAATGGCCACTGACACCGACATCTCT 246
|||||| || || |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 49 TCTTCTTCTTCATCTGGTAATGATATTAATACTTTAATGGCCACTGACGCCGACATCTCT 108
Query 247 CGCCGGAAAAAGAATCCGGTTTATCGGGGAATTCGTTGTCGGAGTGGAAAATGGGTGTCT 306
|||||||||||| ||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 109 CGCCGGAAAAAGCGTCCGGTTTACCGGGGAATTCGTTGCCGGAGTGGAAAATGGGTCTCC 168
Query 307 GAAATCCGAGAGCCTAAAAAGACTACACGTGTCTGGCTTGGGACTTATCCGACGCCGGAG 366
|| |||||||||||||| |||||||||||||| |||||||| |||||| |||||||||||
Sbjct 169 GAGATCCGAGAGCCTAAGAAGACTACACGTGTTTGGCTTGGAACTTATACGACGCCGGAG 228
Query 367 ATGGCTGCTGCCGCATATGACGTGGCGGCGTTAGCTCTTAAAGGTGGAGACACTC-TCTT 425
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||| | ||||
Sbjct 229 ATGGCTGCGGCCGCCTATGACGTGGCGGCTTTAGCTCTTAAAGGTGGAGACAC-CGTCTT 287
Query 426 GAACTTCCCGGATTCCCTGGGATCTTACCCCATTCCCCTTTCCTCTTCCGCAGCTCATAT 485
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 288 GAACTTCCCGGATTCCGTGGGATCTTACCCCAGTCCCCTTTCCTCTTCCGCAGCTCATAT 347
Query 486 CAGATGCGCTGCAGCTGCGGCTGCTGCGACTAGGGGTGCGGCTGGAGCGGCCGTGAAGGT 545
||||||||||||||| || ||||||||| ||||||||||||||| ||||||||||||||
Sbjct 348 CAGATGCGCTGCAGCCGCAGCTGCTGCGGCTAGGGGTGCGGCTGCAGCGGCCGTGAAGGG 407
Query 546 AGGTCAAAAGAAGGAAGATAAAGTTTATGATACGGCGGAATCTTCAACTATGGGGTTTGT 605
|||| ||||||||||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct 408 AGGTGAAAAGAAGGAAGAGGAAGTTTGTGATACGGCGGGATCTTCAACTATGGGGTTTGT 467
Query 606 GGATGAAGAAGAGCTATTGAACATGCCTGGTTTGCTAGCGGATATGGCCAAAGGGATGAT 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 GGATGAAGAAGAGCTATTGAACATGCCTGGTTTGCTAGCGGATATGGCCAAAGGGATGAT 527
Query 666 GGTGGCTCCACCGTGGATGGGATCTCCACCGTCAGATGATTCGCCAGAGAATTCTGATGG 725
||||||||| ||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 528 GGTGGCTCCTCCGTGGATGGGATCTCCTCCGTCAGATGATTCGCCGGAAAATTCTGATGG 587
Query 726 AGAGAGCTTGTGGAGCTATTGA 747
||||||||||||||||||||||
Sbjct 588 AGAGAGCTTGTGGAGCTATTGA 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27524746074
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5