BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63190.1
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475028 jgi|Araly1|475028|fgenesh2_kg.2__158__AT1G63190.1 835 0.0
Ahg924661 jgi|Araly1|924661|scaffold_200222.1 713 0.0
> Ahg475028 jgi|Araly1|475028|fgenesh2_kg.2__158__AT1G63190.1
Length=678
Score = 835 bits (452), Expect = 0.0
Identities = 612/686 (89%), Gaps = 24/686 (3%)
Strand=Plus/Plus
Query 1 ATGAGTGAATTTGAAGGCTGGATC-AAATGGCTCGAACCAGTGTTTTTGCTGTGGAAACC 59
||| |||| ||||||||||||| | || ||||| | ||||| |||| |||||||||||||
Sbjct 1 ATGGGTGACTTTGAAGGCTGGA-CTAAGTGGCTGGTACCAGGGTTTCTGCTGTGGAAACC 59
Query 60 TGAGGATCCTGGCTATGAGAGACCAGCGTATAGGGATTGGACCAAAGAGGAAGATGAGCC 119
||||||||||||||||||||||| ||||| |||||||||||| | ||||| ||||||||
Sbjct 60 AGAGGATCCTGGCTATGAGAGACCTGCGTACAGGGATTGGACCGAGGAGGAGGATGAGCC 119
Query 120 TAAGTACTCACCAGAGAAAGAACTTGCCTTACTCGACAAACAAATCCTTGCAAGCGATGG 179
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TAAGTACTCACCAAAGGAAGAACTTGCCTTACTCGACAAACAAATCCTTGCAAGCGATGG 179
Query 180 TTTTGATATCGACTTCACACACTTCCGTTGTGTATTCAATTACCATCTTGCTTATCTCGA 239
||||||||||||| |||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 180 GTTTGATATCGACTACACACACTTCCGGTGTGTCTTCAACTACCATCTTGCTTATCTCGA 239
Query 240 TTCACATGAATTCGTTGATGAG-C--CAGAAACCACAAGAGATTTACTCGAGAGGCTCTC 296
||| ||||||||| ||| ||| | |||||||||| || ||||||||||||||||||||
Sbjct 240 CTCAGATGAATTCGCTGAGGAGCCAACAGAAACCACTAGGGATTTACTCGAGAGGCTCTC 299
Query 297 TAGGAAGGCCCTTGATGACTACAATCAAGAATCA-AGAACACAATTTGAGTTTGTCAAGG 355
||||||||||||||||||| |||||| |||| | ||||| ||||||||||||||||||
Sbjct 300 TAGGAAGGCCCTTGATGACCACAATCTCGAAT-ATGGAACAGAATTTGAGTTTGTCAAGG 358
Query 356 TTGTGAAAGCAAACTTTCACTTTTGTTGTGCGAT-TATGTTTCTCATAACCTTCGAAGTT 414
|||||||||| |||||||||| |||||||| || ||||||||||||||| || ||||||
Sbjct 359 TTGTGAAAGCCAACTTTCACTGGTGTTGTGC-ATATATGTTTCTCATAACATTTGAAGTT 417
Query 415 GTTGACCCTTATGATAACTTGATCAAACTCTTCCAAACAAGGGTTCGCCACGCTGA-AGA 473
||||| ||||||||||||||||| |||||||||||||||||||||||| ||| || |||
Sbjct 418 GTTGATCCTTATGATAACTTGATAAAACTCTTCCAAACAAGGGTTCGCTACG-AGACAGA 476
Query 474 TATCGTGACTGAGTACGTCTTTTGCAGGCCGAAACCCAATCAAGGAGTGGAATGCATTGG 533
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 477 TATCGTGACTGAGTATGTCTTCTGCAGGCCGAAACCCAATCAAGGAGTGGAATGCATTGG 536
Query 534 TGTGAAGAACAATGATG--G--G--AAAGATGTCCAAA-CAAATGTCAAGGAACAAGAGA 586
||||||||||||||||| | | ||||||||||||| ||| ||||||| ||||| |||
Sbjct 537 TGTGAAGAACAATGATGTTGTTGGGAAAGATGTCCAAAACAA-TGTCAAGAAACAAAAGA 595
Query 587 TTCCTTGTATGTATGGATGGTTTTTAAGAGTAATCACCATCACCTTCACTTTACAGATTG 646
||||||||||||||||||||||||||| ||| ||| | | ||| ||||||||||||
Sbjct 596 TTCCTTGTATGTATGGATGGTTTTTAACAGTTATCGGC-T----TTCTCTTTACAGATTG 650
Query 647 GAGTAGGAGCTTCTATATGCCACAAG 672
||||| ||||||||||||||||||||
Sbjct 651 GAGTATGAGCTTCTATATGCCACAAG 676
> Ahg924661 jgi|Araly1|924661|scaffold_200222.1
Length=637
Score = 713 bits (386), Expect = 0.0
Identities = 486/532 (91%), Gaps = 16/532 (3%)
Strand=Plus/Plus
Query 15 AGGCTGGATCAAATGGCTCGAACCA--GTGT-T----TT-TGCTGTGGAAACCTGAGGAT 66
||||||||| ||||||||||||||| || | | || ||||||||||||||||||||
Sbjct 9 AGGCTGGATTAAATGGCTCGAACCAGGGTTTCTGCAATTCTGCTGTGGAAACCTGAGGAT 68
Query 67 CCTGGCTATGAGAGACCAGCGTATAGGGATTGGACCAAAGAGGAAGATGAGCCTAAGTAC 126
||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||
Sbjct 69 CCTGGCTATGAGAGACCTGCGTATAGGGATTGGACCGAGGAGGAAGATGAGCCTAAGTAC 128
Query 127 TCACCAGAGAAAGAACTTGCCTTACTCGACAAACAAATCCTTGCAAGCGATGGTTTTGAT 186
||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 129 TCACCAGAGGAAGAACTTGCCTTACTCGACAAACAAATCCTTGCGAGCGATGGGTTTGAT 188
Query 187 ATCGACTTCACACACTTCCGTTGTGTATTCAATTACCATCTTGCTTATCTCGATTCACAT 246
||||||| |||||| ||||| ||||| ||||| |||||||||||||||||||| ||| ||
Sbjct 189 ATCGACTACACACAGTTCCGGTGTGTCTTCAACTACCATCTTGCTTATCTCGACTCAGAT 248
Query 247 GAATTCGTTGATGAG-C--CAGAAACCACAAGAGATTTACTCGAGAGGCTCTCTAGGAAG 303
||||||| ||| ||| | |||||||||| || |||||||||||||||||||||||||||
Sbjct 249 GAATTCGCTGAGGAGCCAACAGAAACCACTAGGGATTTACTCGAGAGGCTCTCTAGGAAG 308
Query 304 GCCCTTGATGACTACAATCAAGAATCAAGAACACAATTTGAGTTTGTCAAGGTTGTGAAA 363
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 309 GCCCTTGATGACTACAATCAAGAATCTAGAACAAAATTTGAGTTTGTCAAGGTTGTGAAA 368
Query 364 GCAAACTTTCACTTTTGTTGTGCGAT-TATGTTTCTCATAACCTTCGAAGTTGTTGACCC 422
||||||||||||| |||||||| || ||||||||||||||| || ||||||||||| ||
Sbjct 369 GCAAACTTTCACTGGTGTTGTGC-ATATATGTTTCTCATAACATTTGAAGTTGTTGATCC 427
Query 423 TTATGATAACTTGATCAAACTCTTCCAAACAAGGGTTCGCCACGCTGA-AGATATCGTGA 481
||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||
Sbjct 428 TTATGATAACTTGATAAAACTCTTCCAAACAAGGGTTCGCCACGA-GACAGATATCGTGA 486
Query 482 CTGAGTACGTCTTTTGCAGGCCGAAACCCAATCAAGGAGTGGAATGCATTGG 533
||||||| ||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 487 CTGAGTATGTCTTTTGCAGGC-GAAACCCAATCAAGAAGTGGAATGCATTGG 537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24894264801
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5