BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G63206.1 Length=833 Score E Sequences producing significant alignments: (Bits) Value Ahg315087 jgi|Araly1|315087|fgenesh1_pm.C_scaffold_2000120 649 0.0 Ahg907102 jgi|Araly1|907102|Al_scaffold_0002_183 610 5e-174 > Ahg315087 jgi|Araly1|315087|fgenesh1_pm.C_scaffold_2000120 Length=531 Score = 649 bits (351), Expect = 0.0 Identities = 482/543 (89%), Gaps = 17/543 (3%) Strand=Plus/Plus Query 1 ATGCCGGGACGTGTGTATCTGTGTTACGAGGTTGGTTCGTTTCCTGTGAATTTGATTCCT 60 |||| |||||||||||||||| |||||||||||||||| |||||| |||| |||||||| Sbjct 1 ATGCTGGGACGTGTGTATCTGAGTTACGAGGTTGGTTCTTTTCCTAAGAATCTGATTCCT 60 Query 61 CCGCATATACGATGGGACGAGAAGAAAGAGCCTATGTACACGAGACATG-AAGAGTGTGT 119 |||||||| ||| |||||||||| |||||||||| |||||||| ||| | |||||||||| Sbjct 61 CCGCATATTCGACGGGACGAGAATAAAGAGCCTAAGTACACGACACA-GCAAGAGTGTGT 119 Query 120 TATGATGAGAAGACAAGTGAAGAAGAGCAAGGGTTTTGACATCGATTTCACACAGTTTCG 179 |||||||||||||||||| | |||||||||||| || |||||||||||||||||||| || Sbjct 120 TATGATGAGAAGACAAGTCAGGAAGAGCAAGGGGTTCGACATCGATTTCACACAGTTCCG 179 Query 180 CTCTGTGTTCAATTACCGCCCTGTTGATTTAGACGATTTAGACTATAAAGAGTATTCTTT 239 |||||| |||||||||||||||||| |||| ||| | | || || ||||||||||| Sbjct 180 CTCTGTTTTCAATTACCGCCCTGTTAATTTTGAC--T---G--TA-AA-GAGTATTCTTT 230 Query 240 GGCAACAGAAACCACTACGGAGTTACTCAAGAGGCTGTCTCAAAACTCCCTTAAGAACTA 299 |||| |||||||||||| || ||||||| |||||||||||| |||||||||||||||||| Sbjct 231 GGCACCAGAAACCACTAGGGGGTTACTCGAGAGGCTGTCTCGAAACTCCCTTAAGAACTA 290 Query 300 CAATTCAGAATTGTTTACAGAATATGAATTTCTCAAGGTTGTCAAAGCCAATACTTACAT 359 ||| ||||| |||||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct 291 CAACAAAGAATGGTTTACAGAATATGAATTTCTCAATGTTGTCAAAGCCAATTCTTACAT 350 Query 360 GTGTACTGGGCCTGGTAGAATGTATTTCATAACCTTTGAGGTTAGAGATCCTTACGATAA 419 |||| ||||| ||||||| ||||||||||||||||||| ||||||||||||| || Sbjct 351 GTGTTCTGGG------AGAATGTTTTTCATAACCTTTGAGGTTCGAGATCCTTACGACAA 404 Query 420 CCTGCTAAAGCTCTTTCAAACTAGGGTCCGCCATGATTATGATGTTACGGATGACTACAT 479 ||||| ||||||||| ||| ||||||||||| || ||||||||||||||||||||||||| Sbjct 405 CCTGCCAAAGCTCTTCCAAGCTAGGGTCCGCTATTATTATGATGTTACGGATGACTACAT 464 Query 480 ATTATGCAGACCAAAGCCCTATCAGAAAGTCAAATGCGTTGGATCTTCCAAGACACATAA 539 ||||||||||||||| ||| ||||||||||||||||||||||| |||||| || |||||| Sbjct 465 ATTATGCAGACCAAAACCCAATCAGAAAGTCAAATGCGTTGGAACTTCCAGGAAACATAA 524 Query 540 AAG 542 ||| Sbjct 525 AAG 527 > Ahg907102 jgi|Araly1|907102|Al_scaffold_0002_183 Length=981 Score = 610 bits (330), Expect = 5e-174 Identities = 520/608 (86%), Gaps = 28/608 (5%) Strand=Plus/Plus Query 1 ATGCCGGGACGTGTGTATCTGTGTTACGAGGTTGGTTCGTTTCCTGTGAATTTGATTCCT 60 |||| |||||||||||||||| |||||||||||||||| |||||| |||| |||||||| Sbjct 34 ATGCTGGGACGTGTGTATCTGAGTTACGAGGTTGGTTCTTTTCCTAAGAATCTGATTCCT 93 Query 61 CCGCATATACGATGGGACGAGAAGAAAGAGCCTATGTACACGAGACATG-AAGAGTGTGT 119 |||||||| ||| |||||||||| |||||||||| |||||||| ||| | |||||||||| Sbjct 94 CCGCATATTCGACGGGACGAGAATAAAGAGCCTAAGTACACGACACA-GCAAGAGTGTGT 152 Query 120 TATGATGAGAAGACAAGTGAAGAAGAGCAAGGGTTTTGACATCGATTTCACACAGTTTCG 179 |||||||||||||||||| | |||||||||||| || |||||||||||||||||||| || Sbjct 153 TATGATGAGAAGACAAGTCAGGAAGAGCAAGGGGTTCGACATCGATTTCACACAGTTCCG 212 Query 180 CTCTGTGTTCAATTACCGCCCTGTTGATTTAGACGATTTAGACTATAAAGAGTATTCTTT 239 |||||| |||||||||||||||||| |||| ||| | | || || ||||||||||| Sbjct 213 CTCTGTTTTCAATTACCGCCCTGTTAATTTTGAC--T---G--TA-AA-GAGTATTCTTT 263 Query 240 GGCAACAGAAACCACTACGGAGTTACTCAAGAGGCTGTCTCAAAACTCCCTTAAGAACTA 299 |||| |||||||||||| || ||||||| |||||||||||| |||||||||||||||||| Sbjct 264 GGCACCAGAAACCACTAGGGGGTTACTCGAGAGGCTGTCTCGAAACTCCCTTAAGAACTA 323 Query 300 CAATTCAGAATTGTTTACAGAATATGAATTTCTCAAGGTTGTCAAAGCCAATACTTACAT 359 ||| ||||| |||||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct 324 CAACAAAGAATGGTTTACAGAATATGAATTTCTCAATGTTGTCAAAGCCAATTCTTACAT 383 Query 360 GTGTACTGGGCCTGGTAGAATGTATTTCATAACCTTTGAGGTTAGAGATCCTTACGATAA 419 |||| ||||| | | | ||| ||||||||||||||||||| ||||||||||||| || Sbjct 384 GTGTTCTGGGA-T---A-A-TGTTTTTCATAACCTTTGAGGTTCGAGATCCTTACGACAA 437 Query 420 CCTG-CTAAAGCTCTTTCAAACTAGGGTCCGCCATGATTATGATGTTACGGATGACTACA 478 |||| | ||||||||| ||| ||||||||||| || ||||||||||||| |||||||||| Sbjct 438 CCTGGC-AAAGCTCTTCCAAGCTAGGGTCCGCTATTATTATGATGTTACAGATGACTACA 496 Query 479 TATTATGCAGACCAAAGCCCTATCAGAAAGT-CAAATGCGTTGGATCTTCCAAGA-CACA 536 |||||||||||||||| ||| ||||||||| || || || || || | || Sbjct 497 TATTATGCAGACCAAAACCCAATCAGAAAGGGCAGATTTTTT--ATG----AATATCATG 550 Query 537 TAAAAGCTTGGCATAGGACCTTATGCGATATCCAATGTGGTTTTCTTGGTGAGCAGTGAG 596 | ||||||||||||| ||||||||||||| |||| ||||| |||||||||||||| Sbjct 551 TTGT-GCTTGGCATAGGAGCTTATGCGATATCTAATGCGGTTTGGGTGGTGAGCAGTGAG 609 Query 597 CTAAATTA 604 |||||||| Sbjct 610 CTAAATTA 617 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30803316936 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5